Wall clock time and date at job start Fri Mar 5 2021 23:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50695 * 109.47325 * 120.00585 * 2 1 3 5 5 C 1.38239 * 119.99943 * 244.72391 * 4 2 1 6 6 C 1.38234 * 119.99845 * 179.74076 * 5 4 2 7 7 C 1.38241 * 119.99903 * 0.54797 * 6 5 4 8 8 S 1.76198 * 119.99950 * 179.72285 * 7 6 5 9 9 O 1.42107 * 106.40051 * 23.51975 * 8 7 6 10 10 O 1.42095 * 106.40430 * 156.44264 * 8 7 6 11 11 N 1.65604 * 107.22032 * 269.98392 * 8 7 6 12 12 C 1.47215 * 136.18224 * 89.99353 * 11 8 7 13 13 C 1.53629 * 88.20503 * 206.42193 * 12 11 8 14 14 C 1.46279 * 136.17722 * 269.63430 * 11 8 7 15 15 C 1.53071 * 120.98728 * 27.44487 * 14 11 8 16 16 C 1.53924 * 86.84446 * 259.66147 * 15 14 11 17 17 C 1.52999 * 113.65894 * 220.52617 * 16 15 14 18 18 F 1.39896 * 109.47156 * 277.71188 * 17 16 15 19 19 C 1.53078 * 120.98296 * 279.40434 * 14 11 8 20 20 C 1.38231 * 120.00212 * 359.70569 * 7 6 5 21 21 C 1.38237 * 119.99961 * 64.99133 * 4 2 1 22 22 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 23 23 H 1.09004 * 109.46715 * 240.00184 * 2 1 3 24 24 H 1.48501 * 109.99832 * 178.68108 * 3 2 1 25 25 H 1.48498 * 109.99998 * 300.00426 * 3 2 1 26 26 H 1.07999 * 119.99633 * 0.02562 * 5 4 2 27 27 H 1.07998 * 120.00026 * 180.27737 * 6 5 4 28 28 H 1.09001 * 113.43543 * 321.25938 * 12 11 8 29 29 H 1.09005 * 113.43193 * 91.58940 * 12 11 8 30 30 H 1.09000 * 114.27500 * 88.17214 * 13 12 11 31 31 H 1.08999 * 114.27740 * 221.02359 * 13 12 11 32 32 H 1.08993 * 113.65574 * 14.15382 * 15 14 11 33 33 H 1.09008 * 113.65503 * 145.17952 * 15 14 11 34 34 H 1.09000 * 113.58184 * 89.72657 * 16 15 14 35 35 H 1.08998 * 109.47100 * 37.71371 * 17 16 15 36 36 H 1.09004 * 109.46543 * 157.70863 * 17 16 15 37 37 H 1.08998 * 113.65258 * 214.82480 * 19 14 11 38 38 H 1.09001 * 113.65427 * 345.85042 * 19 14 11 39 39 H 1.08001 * 120.00146 * 179.97438 * 20 7 6 40 40 H 1.07991 * 120.00315 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.6437 -0.0137 2.1884 6 6 3.0999 -0.6643 3.3196 7 6 2.8535 -2.0142 3.4872 8 16 3.4413 -2.8450 4.9256 9 8 3.6084 -1.8483 5.9246 10 8 2.6120 -3.9860 5.0970 11 7 4.9562 -3.4162 4.5771 12 6 6.3342 -2.9108 4.6911 13 6 6.7196 -3.8401 3.5300 14 6 5.5183 -4.6489 4.0257 15 6 4.7076 -5.5250 3.0673 16 6 4.4139 -6.4293 4.2778 17 6 4.4664 -7.9238 3.9548 18 9 3.2488 -8.3226 3.3932 19 6 5.7121 -5.8882 4.9031 20 6 2.1458 -2.7121 2.5267 21 6 1.6846 -2.0603 1.3982 22 1 -0.3933 0.4417 0.7651 23 1 1.7923 -0.5138 -0.8901 24 1 3.5347 1.7702 0.0321 25 1 1.5615 2.4679 -1.2084 26 1 2.8398 1.0400 2.0554 27 1 3.6526 -0.1189 4.0703 28 1 6.4291 -1.8522 4.4488 29 1 6.8153 -3.1723 5.6336 30 1 6.5908 -3.3993 2.5415 31 1 7.6787 -4.3422 3.6573 32 1 3.8230 -5.0310 2.6656 33 1 5.3115 -6.0066 2.2981 34 1 3.5150 -6.1463 4.8255 35 1 5.2728 -8.1144 3.2467 36 1 4.6462 -8.4873 4.8704 37 1 6.5967 -6.4712 4.6472 38 1 5.6315 -5.6849 5.9710 39 1 1.9536 -3.7668 2.6575 40 1 1.1322 -2.6057 0.6475 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17321338_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:32 Heat of formation + Delta-G solvation = -56.250527 kcal Electronic energy + Delta-G solvation = -26797.248946 eV Core-core repulsion = 22815.407248 eV Total energy + Delta-G solvation = -3981.841698 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -48.42009 -41.87287 -40.77248 -38.30765 -37.80348 -37.04571 -36.83110 -33.09617 -32.29561 -30.00916 -29.12356 -27.33191 -27.00146 -24.61617 -24.17592 -23.09232 -22.12369 -21.35056 -19.76263 -18.96411 -18.33166 -17.98105 -17.39795 -17.09873 -16.90265 -16.74344 -16.46652 -16.29750 -16.15735 -15.93751 -15.70238 -15.42670 -14.90716 -14.82125 -14.50271 -14.14549 -14.07746 -13.85743 -13.71457 -13.58366 -13.23870 -13.12724 -13.06700 -12.81080 -12.71228 -12.47653 -12.26756 -12.11420 -12.03716 -11.82355 -11.72567 -11.48935 -10.99251 -10.70093 -10.47468 -10.23587 -10.21455 -5.17907 -0.85957 -0.41101 0.09988 1.09645 1.48194 1.72296 1.82777 2.27738 2.65956 2.91184 3.10839 3.23814 3.27147 3.33389 3.37751 3.44730 3.50438 3.61737 3.69843 3.90416 4.03587 4.05985 4.09516 4.15085 4.19270 4.25966 4.33067 4.41558 4.49078 4.50565 4.58596 4.61171 4.65278 4.72925 4.75803 4.82427 4.87137 4.88180 4.94039 5.02440 5.15534 5.31356 5.52817 5.60292 6.37338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.689 3.311 4 C -0.063 4.063 5 C -0.137 4.137 6 C -0.014 4.014 7 C -0.671 4.671 8 S 2.711 3.289 9 O -0.949 6.949 10 O -0.945 6.945 11 N -1.023 6.023 12 C 0.130 3.870 13 C -0.137 4.137 14 C 0.163 3.837 15 C -0.140 4.140 16 C -0.154 4.154 17 C 0.073 3.927 18 F -0.217 7.217 19 C -0.127 4.127 20 C -0.017 4.017 21 C -0.113 4.113 22 H 0.381 0.619 23 H 0.119 0.881 24 H -0.255 1.255 25 H -0.250 1.250 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 1.393 -1.139 5.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.188 4.188 3 Si 0.590 3.410 4 C -0.064 4.064 5 C -0.155 4.155 6 C -0.034 4.034 7 C -0.758 4.758 8 S 2.804 3.196 9 O -0.940 6.940 10 O -0.935 6.935 11 N -0.861 5.861 12 C 0.005 3.995 13 C -0.176 4.176 14 C 0.075 3.925 15 C -0.178 4.178 16 C -0.172 4.172 17 C 0.018 3.982 18 F -0.198 7.198 19 C -0.167 4.167 20 C -0.036 4.036 21 C -0.132 4.132 22 H 0.229 0.771 23 H 0.137 0.863 24 H -0.180 1.180 25 H -0.175 1.175 26 H 0.155 0.845 27 H 0.162 0.838 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.160 0.840 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.254 1.700 -1.282 5.669 hybrid contribution -0.181 -0.315 -0.813 0.890 sum 5.073 1.385 -2.094 5.660 Atomic orbital electron populations 1.86539 1.16486 1.81712 1.49310 1.25230 0.85728 1.10604 0.97251 0.94642 0.81159 0.77593 0.87616 1.20751 0.94925 0.94918 0.95777 1.21138 1.00000 0.99853 0.94528 1.20888 0.94172 0.92068 0.96226 1.31015 1.15764 1.06355 1.22674 1.01379 0.71345 0.73435 0.73434 1.93602 1.85288 1.60690 1.54412 1.93583 1.65252 1.49807 1.84889 1.59933 1.19980 1.26144 1.79996 1.22470 0.78333 0.99472 0.99182 1.23412 0.97692 0.97472 0.99069 1.21732 0.91884 0.84809 0.94081 1.23322 1.00481 0.97162 0.96841 1.23398 1.00820 0.94314 0.98702 1.21973 0.82871 0.94544 0.98807 1.92783 1.47661 1.92014 1.87310 1.23161 0.97989 0.95093 1.00417 1.20997 0.91332 1.00042 0.91242 1.21191 0.99841 0.93998 0.98125 0.77100 0.86345 1.17958 1.17486 0.84519 0.83816 0.90083 0.89206 0.88350 0.88994 0.90773 0.87713 0.86138 0.90644 0.90563 0.87664 0.90005 0.84022 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.18 12.83 -35.23 -0.45 -0.28 16 2 C -0.08 0.08 2.80 36.00 0.10 0.18 16 3 Si 0.69 -1.26 29.80 -169.99 -5.07 -6.33 16 4 C -0.06 0.02 5.35 -104.62 -0.56 -0.54 16 5 C -0.14 0.11 8.67 -39.58 -0.34 -0.23 16 6 C -0.01 0.00 9.52 -39.58 -0.38 -0.38 16 7 C -0.67 -0.76 5.97 -39.58 -0.24 -1.00 16 8 S 2.71 6.03 6.27 -107.50 -0.67 5.36 16 9 O -0.95 -4.59 17.28 -57.17 -0.99 -5.58 16 10 O -0.94 -4.22 15.76 -57.17 -0.90 -5.12 16 11 N -1.02 0.46 4.23 -114.04 -0.48 -0.02 16 12 C 0.13 -0.37 8.72 -9.80 -0.09 -0.45 16 13 C -0.14 0.54 8.25 -26.37 -0.22 0.33 16 14 C 0.16 -0.31 1.53 -138.30 -0.21 -0.53 16 15 C -0.14 0.20 7.52 -26.21 -0.20 0.00 16 16 C -0.15 0.06 4.05 -89.66 -0.36 -0.30 16 17 C 0.07 -0.06 7.35 37.16 0.27 0.22 16 18 F -0.22 -0.68 17.36 2.25 0.04 -0.64 16 19 C -0.13 0.31 7.52 -26.21 -0.20 0.11 16 20 C -0.02 -0.01 9.42 -39.58 -0.37 -0.39 16 21 C -0.11 -0.04 9.69 -39.58 -0.38 -0.42 16 22 H 0.38 -1.55 8.70 45.56 0.40 -1.15 16 23 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 25 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 26 H 0.14 -0.44 4.91 -52.49 -0.26 -0.69 16 27 H 0.14 -0.18 7.62 -52.49 -0.40 -0.58 16 28 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 30 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 31 H 0.09 -0.50 8.14 -51.93 -0.42 -0.93 16 32 H 0.07 -0.05 7.51 -51.93 -0.39 -0.44 16 33 H 0.10 -0.33 7.97 -51.92 -0.41 -0.74 16 34 H 0.12 0.27 6.60 -51.93 -0.34 -0.07 16 35 H 0.08 -0.22 7.95 -51.93 -0.41 -0.63 16 36 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 37 H 0.11 -0.49 8.10 -51.93 -0.42 -0.91 16 38 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 39 H 0.14 0.01 7.09 -52.49 -0.37 -0.36 16 40 H 0.14 -0.08 8.06 -52.49 -0.42 -0.50 16 LS Contribution 345.45 15.07 5.21 5.21 Total: 0.00 -9.74 345.45 -11.67 -21.41 By element: Atomic # 1 Polarization: -5.42 SS G_CDS: -5.18 Total: -10.61 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.17 Total: -3.40 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -0.48 Total: -0.02 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -2.34 Total: -10.98 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.04 Total: -0.64 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.07 Total: -6.33 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -0.67 Total: 5.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -9.74 -11.67 -21.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.836 kcal (2) G-P(sol) polarization free energy of solvation -9.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds