Wall clock time and date at job start Fri Mar 5 2021 23:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50695 * 109.47325 * 120.00585 * 2 1 3 5 5 C 1.38239 * 119.99943 * 244.72391 * 4 2 1 6 6 C 1.38234 * 119.99845 * 179.74076 * 5 4 2 7 7 C 1.38241 * 119.99903 * 0.54797 * 6 5 4 8 8 S 1.76198 * 119.99950 * 179.72285 * 7 6 5 9 9 O 1.42107 * 106.40051 * 23.51975 * 8 7 6 10 10 O 1.42095 * 106.40430 * 156.44264 * 8 7 6 11 11 N 1.65604 * 107.22032 * 269.98392 * 8 7 6 12 12 C 1.47215 * 136.18224 * 89.99353 * 11 8 7 13 13 C 1.53629 * 88.20503 * 206.42193 * 12 11 8 14 14 C 1.46279 * 136.17722 * 269.63430 * 11 8 7 15 15 C 1.53071 * 120.98728 * 27.44487 * 14 11 8 16 16 C 1.53924 * 86.84446 * 259.66147 * 15 14 11 17 17 C 1.52999 * 113.65894 * 220.52617 * 16 15 14 18 18 F 1.39896 * 109.47156 * 277.71188 * 17 16 15 19 19 C 1.53078 * 120.98296 * 279.40434 * 14 11 8 20 20 C 1.38231 * 120.00212 * 359.70569 * 7 6 5 21 21 C 1.38237 * 119.99961 * 64.99133 * 4 2 1 22 22 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 23 23 H 1.09004 * 109.46715 * 240.00184 * 2 1 3 24 24 H 1.48501 * 109.99832 * 178.68108 * 3 2 1 25 25 H 1.48498 * 109.99998 * 300.00426 * 3 2 1 26 26 H 1.07999 * 119.99633 * 0.02562 * 5 4 2 27 27 H 1.07998 * 120.00026 * 180.27737 * 6 5 4 28 28 H 1.09001 * 113.43543 * 321.25938 * 12 11 8 29 29 H 1.09005 * 113.43193 * 91.58940 * 12 11 8 30 30 H 1.09000 * 114.27500 * 88.17214 * 13 12 11 31 31 H 1.08999 * 114.27740 * 221.02359 * 13 12 11 32 32 H 1.08993 * 113.65574 * 14.15382 * 15 14 11 33 33 H 1.09008 * 113.65503 * 145.17952 * 15 14 11 34 34 H 1.09000 * 113.58184 * 89.72657 * 16 15 14 35 35 H 1.08998 * 109.47100 * 37.71371 * 17 16 15 36 36 H 1.09004 * 109.46543 * 157.70863 * 17 16 15 37 37 H 1.08998 * 113.65258 * 214.82480 * 19 14 11 38 38 H 1.09001 * 113.65427 * 345.85042 * 19 14 11 39 39 H 1.08001 * 120.00146 * 179.97438 * 20 7 6 40 40 H 1.07991 * 120.00315 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.6437 -0.0137 2.1884 6 6 3.0999 -0.6643 3.3196 7 6 2.8535 -2.0142 3.4872 8 16 3.4413 -2.8450 4.9256 9 8 3.6084 -1.8483 5.9246 10 8 2.6120 -3.9860 5.0970 11 7 4.9562 -3.4162 4.5771 12 6 6.3342 -2.9108 4.6911 13 6 6.7196 -3.8401 3.5300 14 6 5.5183 -4.6489 4.0257 15 6 4.7076 -5.5250 3.0673 16 6 4.4139 -6.4293 4.2778 17 6 4.4664 -7.9238 3.9548 18 9 3.2488 -8.3226 3.3932 19 6 5.7121 -5.8882 4.9031 20 6 2.1458 -2.7121 2.5267 21 6 1.6846 -2.0603 1.3982 22 1 -0.3933 0.4417 0.7651 23 1 1.7923 -0.5138 -0.8901 24 1 3.5347 1.7702 0.0321 25 1 1.5615 2.4679 -1.2084 26 1 2.8398 1.0400 2.0554 27 1 3.6526 -0.1189 4.0703 28 1 6.4291 -1.8522 4.4488 29 1 6.8153 -3.1723 5.6336 30 1 6.5908 -3.3993 2.5415 31 1 7.6787 -4.3422 3.6573 32 1 3.8230 -5.0310 2.6656 33 1 5.3115 -6.0066 2.2981 34 1 3.5150 -6.1463 4.8255 35 1 5.2728 -8.1144 3.2467 36 1 4.6462 -8.4873 4.8704 37 1 6.5967 -6.4712 4.6472 38 1 5.6315 -5.6849 5.9710 39 1 1.9536 -3.7668 2.6575 40 1 1.1322 -2.6057 0.6475 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17321338_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:31 Heat of formation + Delta-G solvation = -57.430676 kcal Electronic energy + Delta-G solvation = -26797.300121 eV Core-core repulsion = 22815.407248 eV Total energy + Delta-G solvation = -3981.892873 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.52764 -41.70379 -40.76078 -38.53211 -37.75594 -37.15997 -36.84071 -33.09480 -32.29148 -29.87654 -28.99874 -27.29899 -26.83238 -24.42882 -24.16448 -23.09018 -22.00211 -21.28033 -19.81161 -19.01828 -18.30381 -17.94735 -17.38849 -17.08859 -16.86912 -16.74133 -16.42227 -16.22597 -16.10960 -15.91603 -15.68132 -15.46613 -14.87769 -14.82180 -14.53223 -14.11210 -14.04389 -13.86299 -13.59011 -13.46334 -13.42751 -13.30958 -13.03189 -12.72486 -12.66542 -12.49560 -12.19264 -12.05374 -11.92247 -11.81356 -11.66930 -11.38350 -10.83704 -10.66215 -10.44061 -10.24056 -10.09784 -5.05103 -0.94050 -0.46194 0.09923 1.20092 1.57512 1.71779 1.90736 2.26494 2.56806 2.88149 3.27790 3.34747 3.41373 3.45067 3.50082 3.60077 3.64834 3.71202 3.74939 4.03607 4.09162 4.14640 4.21249 4.23696 4.31775 4.43297 4.48789 4.51448 4.63491 4.66148 4.74341 4.76374 4.78481 4.82934 4.89463 4.94952 4.98107 5.02924 5.08837 5.16341 5.28088 5.45778 5.60959 5.66583 6.63288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.083 4.083 3 Si 0.775 3.225 4 C -0.062 4.062 5 C -0.134 4.134 6 C -0.022 4.022 7 C -0.675 4.675 8 S 2.717 3.283 9 O -0.983 6.983 10 O -0.979 6.979 11 N -1.029 6.029 12 C 0.119 3.881 13 C -0.118 4.118 14 C 0.157 3.843 15 C -0.142 4.142 16 C -0.165 4.165 17 C 0.066 3.934 18 F -0.242 7.242 19 C -0.118 4.118 20 C -0.027 4.027 21 C -0.120 4.120 22 H 0.397 0.603 23 H 0.117 0.883 24 H -0.277 1.277 25 H -0.296 1.296 26 H 0.163 0.837 27 H 0.157 0.843 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 1.837 -1.801 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.193 4.193 3 Si 0.679 3.321 4 C -0.063 4.063 5 C -0.152 4.152 6 C -0.041 4.041 7 C -0.763 4.763 8 S 2.814 3.186 9 O -0.974 6.974 10 O -0.970 6.970 11 N -0.869 5.869 12 C -0.004 4.004 13 C -0.158 4.158 14 C 0.069 3.931 15 C -0.181 4.181 16 C -0.183 4.183 17 C 0.012 3.988 18 F -0.224 7.224 19 C -0.157 4.157 20 C -0.047 4.047 21 C -0.139 4.139 22 H 0.247 0.753 23 H 0.134 0.866 24 H -0.203 1.203 25 H -0.224 1.224 26 H 0.180 0.820 27 H 0.174 0.826 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.091 0.909 39 H 0.157 0.843 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.100 2.123 -1.895 7.649 hybrid contribution -0.767 -0.462 -0.664 1.115 sum 6.333 1.661 -2.559 7.030 Atomic orbital electron populations 1.86505 1.16787 1.82187 1.50506 1.25401 0.85625 1.11450 0.96813 0.93636 0.78321 0.74773 0.85331 1.20880 0.94685 0.94653 0.96100 1.21405 0.99087 1.01009 0.93733 1.21139 0.94335 0.91715 0.96956 1.30821 1.16475 1.06921 1.22128 1.00755 0.71788 0.72618 0.73487 1.93547 1.86017 1.61546 1.56264 1.93540 1.66875 1.50870 1.85673 1.59823 1.19778 1.27285 1.79984 1.22786 0.76738 1.00530 1.00368 1.23391 0.97561 0.96207 0.98604 1.21978 0.92438 0.84676 0.94048 1.23421 1.00429 0.97144 0.97061 1.23334 1.00612 0.94917 0.99475 1.22264 0.82335 0.94263 0.99984 1.92726 1.49608 1.92271 1.87775 1.23214 0.97897 0.94869 0.99738 1.21039 0.91827 1.00138 0.91657 1.21321 0.99996 0.94589 0.98026 0.75303 0.86604 1.20293 1.22376 0.82008 0.82591 0.89170 0.88355 0.87863 0.86414 0.92320 0.85463 0.89735 0.87778 0.89539 0.84487 0.90889 0.84320 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.52 12.83 -148.98 -1.91 -1.39 16 2 C -0.08 0.20 2.80 71.23 0.20 0.40 16 3 Si 0.77 -3.37 29.80 68.60 2.04 -1.33 16 4 C -0.06 0.05 5.35 -19.87 -0.11 -0.05 16 5 C -0.13 0.31 8.67 22.27 0.19 0.50 16 6 C -0.02 -0.01 9.52 22.27 0.21 0.20 16 7 C -0.67 -2.40 5.97 22.27 0.13 -2.26 16 8 S 2.72 17.54 6.27 -56.49 -0.35 17.19 16 9 O -0.98 -11.40 17.28 -128.00 -2.21 -13.61 16 10 O -0.98 -11.88 15.76 -128.00 -2.02 -13.89 16 11 N -1.03 0.24 4.23 -514.72 -2.18 -1.94 16 12 C 0.12 -0.76 8.72 82.26 0.72 -0.04 16 13 C -0.12 1.17 8.25 30.83 0.25 1.42 16 14 C 0.16 -0.66 1.53 -0.48 0.00 -0.66 16 15 C -0.14 0.37 7.52 30.93 0.23 0.60 16 16 C -0.16 -0.03 4.05 -10.17 -0.04 -0.08 16 17 C 0.07 -0.09 7.35 71.98 0.53 0.44 16 18 F -0.24 -1.86 17.36 44.97 0.78 -1.08 16 19 C -0.12 0.64 7.52 30.93 0.23 0.87 16 20 C -0.03 -0.09 9.42 22.27 0.21 0.12 16 21 C -0.12 -0.17 9.69 22.27 0.22 0.05 16 22 H 0.40 -3.44 8.70 -74.06 -0.64 -4.08 16 23 H 0.12 -0.23 7.96 -2.38 -0.02 -0.24 16 24 H -0.28 0.16 7.11 99.48 0.71 0.87 16 25 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 26 H 0.16 -1.30 4.91 -2.91 -0.01 -1.32 16 27 H 0.16 -0.39 7.62 -2.91 -0.02 -0.41 16 28 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 30 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 31 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 32 H 0.06 0.03 7.51 -2.39 -0.02 0.02 16 33 H 0.13 -0.96 7.97 -2.38 -0.02 -0.98 16 34 H 0.08 0.65 6.60 -2.39 -0.02 0.63 16 35 H 0.10 -0.76 7.95 -2.39 -0.02 -0.78 16 36 H 0.09 -0.34 8.14 -2.38 -0.02 -0.36 16 37 H 0.14 -1.63 8.10 -2.39 -0.02 -1.65 16 38 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.14 0.42 7.09 -2.91 -0.02 0.40 16 40 H 0.14 -0.03 8.06 -2.92 -0.02 -0.05 16 Total: 0.00 -25.07 345.45 -2.41 -27.48 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: 0.46 Total: -12.92 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 2.98 Total: 1.50 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -2.18 Total: -1.94 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -6.14 Total: -28.89 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: -3.37 SS G_CDS: 2.04 Total: -1.33 kcal Atomic # 16 Polarization: 17.54 SS G_CDS: -0.35 Total: 17.19 kcal Total: -25.07 -2.41 -27.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.952 kcal (2) G-P(sol) polarization free energy of solvation -25.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds