Wall clock time and date at job start Fri Mar 5 2021 23:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.33387 * 122.54113 * 285.00050 * 4 2 1 6 6 S 1.76197 * 125.20468 * 359.97438 * 5 4 2 7 7 O 1.42096 * 106.39967 * 263.53573 * 6 5 4 8 8 O 1.42095 * 106.40132 * 36.45667 * 6 5 4 9 9 N 1.65598 * 107.21738 * 149.99574 * 6 5 4 10 10 C 1.47218 * 136.18266 * 269.62682 * 9 6 5 11 11 C 1.53883 * 88.10741 * 153.66661 * 10 9 6 12 12 C 1.46287 * 136.17578 * 90.00433 * 9 6 5 13 13 C 1.53073 * 120.98891 * 80.55356 * 12 9 6 14 14 C 1.53923 * 86.84339 * 259.66398 * 13 12 9 15 15 C 1.52995 * 113.66016 * 220.52375 * 14 13 12 16 16 F 1.39896 * 109.47316 * 162.70742 * 15 14 13 17 17 C 1.53069 * 120.98848 * 332.51513 * 12 9 6 18 18 S 1.75892 * 109.59258 * 180.02562 * 5 4 2 19 19 C 1.75884 * 90.96940 * 0.02562 * 18 5 4 20 20 C 1.33391 * 109.59282 * 359.73343 * 19 18 5 21 21 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 22 22 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 23 23 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 24 24 H 1.48495 * 109.99988 * 181.31552 * 3 2 1 25 25 H 1.09001 * 113.43427 * 268.45547 * 10 9 6 26 26 H 1.08994 * 113.43159 * 38.78274 * 10 9 6 27 27 H 1.08999 * 114.46896 * 272.02824 * 11 10 9 28 28 H 1.08996 * 114.18968 * 139.07695 * 11 10 9 29 29 H 1.09002 * 113.64628 * 14.14951 * 13 12 9 30 30 H 1.08994 * 113.65625 * 145.17579 * 13 12 9 31 31 H 1.09001 * 113.58474 * 89.71575 * 14 13 12 32 32 H 1.08998 * 109.47362 * 282.70829 * 15 14 13 33 33 H 1.09001 * 109.46997 * 42.70547 * 15 14 13 34 34 H 1.09006 * 113.65312 * 214.82673 * 17 12 9 35 35 H 1.09007 * 113.64737 * 345.75269 * 17 12 9 36 36 H 1.08005 * 125.20283 * 179.97438 * 19 18 5 37 37 H 1.08006 * 122.53755 * 180.24577 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.8961 -2.0379 -1.3571 6 16 1.2763 -3.1577 -0.1462 7 8 2.4021 -3.6163 0.5897 8 8 0.1608 -2.5180 0.4583 9 7 0.6791 -4.4734 -0.9553 10 6 -0.6198 -4.8722 -1.5222 11 6 0.1454 -5.7630 -2.5167 12 6 1.2068 -5.7570 -1.4177 13 6 1.3521 -6.9410 -0.4584 14 6 2.8454 -6.5779 -0.3718 15 6 3.7738 -7.7940 -0.3701 16 9 5.0751 -7.3877 -0.6842 17 6 2.6903 -5.9234 -1.7562 18 16 2.5643 -2.4994 -2.9173 19 6 2.8635 -0.8139 -3.3214 20 6 2.4604 -0.0348 -2.3165 21 1 -0.3932 0.4417 -0.7651 22 1 1.7923 -0.5139 0.8900 23 1 1.5616 2.4678 1.2085 24 1 3.5347 1.7701 -0.0320 25 1 -1.2420 -5.4349 -0.8263 26 1 -1.1558 -4.0507 -1.9975 27 1 0.4477 -5.2586 -3.4344 28 1 -0.3145 -6.7358 -2.6902 29 1 0.8152 -6.8108 0.4812 30 1 1.1634 -7.9077 -0.9251 31 1 3.0764 -5.8684 0.4227 32 1 3.7657 -8.2559 0.6171 33 1 3.4294 -8.5151 -1.1115 34 1 2.8757 -6.6057 -2.5858 35 1 3.2244 -4.9785 -1.8571 36 1 3.3025 -0.4632 -4.2437 37 1 2.5436 1.0417 -2.3467 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17321338_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:35 Heat of formation + Delta-G solvation = -43.713859 kcal Electronic energy + Delta-G solvation = -25979.250851 eV Core-core repulsion = 22087.105030 eV Total energy + Delta-G solvation = -3892.145821 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.55258 -41.76340 -40.07425 -38.43760 -37.19595 -37.00678 -36.87119 -31.45957 -29.95928 -29.06886 -28.08162 -26.87158 -24.47643 -24.35552 -22.30693 -21.43010 -20.79998 -19.85082 -18.89372 -18.40051 -17.85986 -17.35067 -17.01876 -16.91703 -16.79085 -16.32541 -16.21935 -15.94333 -15.78701 -15.50700 -15.17522 -14.84373 -14.33123 -14.12466 -13.99839 -13.76350 -13.59107 -13.51197 -13.38132 -13.29591 -13.08099 -12.77995 -12.63587 -12.57453 -12.30008 -12.13951 -11.92158 -11.86575 -11.64724 -11.49832 -10.86722 -10.57208 -10.45121 -10.18845 -9.66684 -5.15851 -0.95805 -0.69177 0.20168 0.64392 1.10916 1.23003 1.57019 1.74361 1.87792 2.45800 3.02730 3.23537 3.35639 3.37091 3.45132 3.47194 3.60417 3.68217 3.96277 4.00034 4.11860 4.13630 4.17030 4.21989 4.38480 4.45946 4.63570 4.65007 4.67942 4.73364 4.76249 4.84343 4.86598 4.93448 5.00234 5.06549 5.07570 5.26155 5.41543 5.61246 6.71501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.108 4.108 3 Si 0.819 3.181 4 C -0.007 4.007 5 C -0.797 4.797 6 S 2.727 3.273 7 O -0.988 6.988 8 O -0.953 6.953 9 N -1.030 6.030 10 C 0.121 3.879 11 C -0.114 4.114 12 C 0.152 3.848 13 C -0.116 4.116 14 C -0.168 4.168 15 C 0.068 3.932 16 F -0.240 7.240 17 C -0.142 4.142 18 S 0.225 5.775 19 C -0.150 4.150 20 C -0.169 4.169 21 H 0.392 0.608 22 H 0.078 0.922 23 H -0.290 1.290 24 H -0.276 1.276 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.216 0.784 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -1.393 -10.581 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.218 4.218 3 Si 0.720 3.280 4 C -0.026 4.026 5 C -1.000 5.000 6 S 2.820 3.180 7 O -0.978 6.978 8 O -0.944 6.944 9 N -0.871 5.871 10 C -0.002 4.002 11 C -0.154 4.154 12 C 0.064 3.936 13 C -0.155 4.155 14 C -0.187 4.187 15 C 0.013 3.987 16 F -0.221 7.221 17 C -0.180 4.180 18 S 0.491 5.509 19 C -0.287 4.287 20 C -0.197 4.197 21 H 0.241 0.759 22 H 0.096 0.904 23 H -0.217 1.217 24 H -0.202 1.202 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.211 -2.176 -9.372 9.872 hybrid contribution 0.415 1.208 1.190 1.746 sum -1.796 -0.968 -8.182 8.433 Atomic orbital electron populations 1.86771 1.15062 1.81985 1.49533 1.25645 0.87375 1.13840 0.94943 0.93710 0.77495 0.71921 0.84882 1.19391 0.94307 0.91380 0.97475 1.35506 1.27795 1.14416 1.22261 1.00510 0.72947 0.72089 0.72496 1.93547 1.54432 1.81064 1.68806 1.93648 1.52090 1.75423 1.73209 1.59851 1.23783 1.27738 1.75754 1.22843 0.84224 0.98517 0.94653 1.23431 0.93868 1.02374 0.95696 1.22023 0.95094 0.82170 0.94274 1.23228 0.92966 0.99298 1.00029 1.23322 0.97272 0.98602 0.99483 1.22209 0.76353 0.96366 1.03725 1.92725 1.41694 1.92732 1.94972 1.23396 0.94805 1.01816 0.98012 1.83971 1.55023 1.07230 1.04643 1.26692 1.01921 0.95657 1.04460 1.20452 1.03708 1.03150 0.92419 0.75874 0.90393 1.21719 1.20185 0.88445 0.89419 0.87174 0.85862 0.91135 0.83928 0.90484 0.90038 0.87174 0.84860 0.92689 0.76677 0.79370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -3.86 11.04 -129.07 -1.43 -5.29 16 2 C -0.11 -0.71 1.87 71.24 0.13 -0.58 16 3 Si 0.82 -0.20 30.25 68.60 2.08 1.88 16 4 C -0.01 -0.03 5.13 -20.92 -0.11 -0.14 16 5 C -0.80 -5.35 6.48 66.72 0.43 -4.91 16 6 S 2.73 31.21 5.94 -56.49 -0.34 30.87 16 7 O -0.99 -17.63 16.49 -128.00 -2.11 -19.74 16 8 O -0.95 -16.11 15.11 -119.73 -1.81 -17.92 16 9 N -1.03 -2.95 4.23 -514.63 -2.18 -5.13 16 10 C 0.12 -0.50 8.74 82.36 0.72 0.22 16 11 C -0.11 1.05 8.24 30.82 0.25 1.31 16 12 C 0.15 -0.37 1.52 -0.57 0.00 -0.37 16 13 C -0.12 0.44 7.52 30.93 0.23 0.67 16 14 C -0.17 -0.39 4.07 -10.18 -0.04 -0.43 16 15 C 0.07 -0.02 7.33 71.98 0.53 0.51 16 16 F -0.24 -1.93 17.30 44.97 0.78 -1.15 16 17 C -0.14 0.09 7.47 30.92 0.23 0.33 16 18 S 0.22 -0.11 22.35 -56.49 -1.26 -1.37 16 19 C -0.15 0.74 11.23 66.72 0.75 1.49 16 20 C -0.17 0.48 8.74 21.22 0.19 0.66 16 21 H 0.39 -1.36 8.70 -74.06 -0.64 -2.01 16 22 H 0.08 0.93 7.60 -2.38 -0.02 0.91 16 23 H -0.29 -1.96 7.11 99.48 0.71 -1.25 16 24 H -0.28 -0.97 7.11 99.48 0.71 -0.27 16 25 H 0.10 -0.58 8.14 -2.39 -0.02 -0.59 16 26 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 28 H 0.12 -1.78 8.14 -2.39 -0.02 -1.80 16 29 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.14 -1.61 8.04 -2.39 -0.02 -1.62 16 31 H 0.08 0.82 6.60 -2.39 -0.02 0.81 16 32 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.11 -0.79 8.06 -2.39 -0.02 -0.81 16 34 H 0.13 -0.86 8.10 -2.38 -0.02 -0.88 16 35 H 0.05 0.18 7.12 -2.38 -0.02 0.16 16 36 H 0.22 -2.73 8.06 -2.91 -0.02 -2.76 16 37 H 0.19 -1.88 5.73 -2.91 -0.02 -1.90 16 Total: 0.00 -30.65 332.12 -2.45 -33.10 By element: Atomic # 1 Polarization: -14.50 SS G_CDS: 0.50 Total: -14.00 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 3.32 Total: -1.24 kcal Atomic # 7 Polarization: -2.95 SS G_CDS: -2.18 Total: -5.13 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -5.35 Total: -42.95 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: 2.08 Total: 1.88 kcal Atomic # 16 Polarization: 31.10 SS G_CDS: -1.60 Total: 29.50 kcal Total: -30.65 -2.45 -33.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.617 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds