Wall clock time and date at job start Fri Mar 5 2021 23:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.46794 * 2 1 4 4 C 1.50701 * 109.47011 * 240.00326 * 2 1 3 5 5 C 1.33384 * 125.20118 * 321.25411 * 4 2 1 6 6 S 1.76201 * 122.54427 * 359.97438 * 5 4 2 7 7 O 1.42103 * 106.40238 * 81.68580 * 6 5 4 8 8 O 1.42105 * 106.39861 * 308.77019 * 6 5 4 9 9 N 1.65592 * 107.22031 * 195.22989 * 6 5 4 10 10 C 1.47794 * 134.67751 * 265.92476 * 9 6 5 11 11 C 1.54133 * 86.36347 * 203.85159 * 10 9 6 12 12 C 1.46521 * 134.68178 * 85.95176 * 9 6 5 13 13 C 1.52792 * 121.37301 * 30.54864 * 12 9 6 14 14 C 1.53966 * 86.74560 * 208.96944 * 13 12 9 15 15 C 1.52999 * 113.57453 * 139.25339 * 14 13 12 16 16 F 1.39905 * 109.46993 * 181.41202 * 15 14 13 17 17 C 1.52950 * 121.41178 * 281.33849 * 12 9 6 18 18 C 1.38431 * 114.91890 * 180.25127 * 5 4 2 19 19 C 1.33386 * 114.92021 * 359.49102 * 18 5 4 20 20 S 1.75886 * 125.20230 * 141.23216 * 4 2 1 21 21 H 0.96700 * 114.00108 * 295.09069 * 1 2 3 22 22 H 1.08999 * 109.47093 * 120.00063 * 2 1 3 23 23 H 1.48494 * 110.00370 * 299.99933 * 3 2 1 24 24 H 1.48495 * 110.00100 * 61.32146 * 3 2 1 25 25 H 1.08994 * 113.73325 * 89.48583 * 10 9 6 26 26 H 1.09003 * 113.82738 * 318.22449 * 10 9 6 27 27 H 1.08996 * 113.80147 * 222.92539 * 11 10 9 28 28 H 1.09003 * 113.79851 * 91.41608 * 11 10 9 29 29 H 1.09007 * 113.67030 * 94.50491 * 13 12 9 30 30 H 1.09004 * 113.67222 * 323.43598 * 13 12 9 31 31 H 1.08996 * 113.57955 * 269.96056 * 14 13 12 32 32 H 1.09004 * 109.47079 * 61.41783 * 15 14 13 33 33 H 1.08999 * 109.47285 * 301.41059 * 15 14 13 34 34 H 1.08996 * 113.66822 * 36.56064 * 17 12 9 35 35 H 1.09000 * 113.71485 * 265.44283 * 17 12 9 36 36 H 1.07997 * 122.53702 * 179.72921 * 18 5 4 37 37 H 1.07997 * 125.20319 * 180.20525 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.3862 -1.8052 -1.7627 6 16 -0.0350 -2.5869 -1.0743 7 8 -1.1609 -1.8584 -1.5443 8 8 0.2434 -2.7824 0.3054 9 7 -0.1395 -4.0957 -1.7486 10 6 -0.8557 -4.6686 -2.9076 11 6 -0.7461 -6.0235 -2.1810 12 6 0.4399 -5.4052 -1.4385 13 6 0.7744 -5.8072 -0.0028 14 6 1.8824 -6.6926 -0.6019 15 6 3.1884 -6.6612 0.1945 16 9 4.1410 -7.4657 -0.4400 17 6 1.8806 -5.7498 -1.8192 18 6 2.0251 -2.2843 -2.8934 19 6 3.0827 -1.5724 -3.2855 20 16 3.3258 -0.2222 -2.1849 21 1 -0.3933 0.3746 0.8000 22 1 1.7924 -0.5138 0.8900 23 1 1.5614 2.4679 -1.2084 24 1 1.5879 2.4585 1.2242 25 1 -0.2907 -4.6232 -3.8386 26 1 -1.8793 -4.3096 -3.0141 27 1 -0.4725 -6.8521 -2.8341 28 1 -1.5979 -6.2485 -1.5392 29 1 -0.0180 -6.3710 0.4897 30 1 1.1520 -4.9851 0.6052 31 1 1.5533 -7.7053 -0.8344 32 1 3.0088 -7.0367 1.2019 33 1 3.5563 -5.6366 0.2488 34 1 2.5707 -4.9115 -1.7244 35 1 1.9698 -6.2679 -2.7741 36 1 1.6902 -3.1655 -3.4204 37 1 3.6985 -1.7939 -4.1446 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17321338_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:41 Heat of formation + Delta-G solvation = -49.565671 kcal Electronic energy + Delta-G solvation = -26084.514810 eV Core-core repulsion = 22192.115236 eV Total energy + Delta-G solvation = -3892.399575 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.48778 -41.71812 -39.53888 -37.95327 -37.73189 -37.00312 -36.50680 -32.01162 -29.80178 -29.16393 -27.49188 -27.02449 -24.63208 -24.28213 -22.40868 -21.59566 -20.88704 -19.00228 -18.88459 -18.38902 -17.91331 -17.61981 -17.37062 -17.01703 -16.83053 -16.34398 -16.23385 -16.00093 -15.41691 -15.11813 -15.05114 -14.89342 -14.33136 -14.28855 -13.97670 -13.77530 -13.58828 -13.46029 -13.07836 -13.01952 -12.81881 -12.69979 -12.58853 -12.55198 -12.28354 -12.19441 -12.14831 -11.73990 -11.59159 -11.53640 -11.19377 -11.00938 -10.15996 -10.05072 -9.72554 -5.24906 -0.57943 -0.46198 0.32205 0.64089 0.98714 1.18441 1.45640 1.80058 1.89877 2.87588 2.95253 3.16846 3.25874 3.26981 3.31175 3.42400 3.53382 3.58587 3.80557 3.97042 4.03036 4.09232 4.10959 4.18578 4.26767 4.38042 4.42506 4.58606 4.58842 4.61172 4.69127 4.69608 4.84374 4.87784 4.88671 4.98305 5.04111 5.10698 5.29018 5.54369 6.17964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.076 4.076 3 Si 0.677 3.323 4 C -0.058 4.058 5 C -0.666 4.666 6 S 2.730 3.270 7 O -0.937 6.937 8 O -0.948 6.948 9 N -1.023 6.023 10 C 0.122 3.878 11 C -0.120 4.120 12 C 0.158 3.842 13 C -0.138 4.138 14 C -0.139 4.139 15 C 0.071 3.929 16 F -0.217 7.217 17 C -0.135 4.135 18 C -0.083 4.083 19 C -0.211 4.211 20 S 0.164 5.836 21 H 0.399 0.601 22 H 0.110 0.890 23 H -0.237 1.237 24 H -0.234 1.234 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -1.912 -0.712 3.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.186 4.186 3 Si 0.573 3.427 4 C -0.179 4.179 5 C -0.764 4.764 6 S 2.818 3.182 7 O -0.928 6.928 8 O -0.939 6.939 9 N -0.861 5.861 10 C -0.003 4.003 11 C -0.159 4.159 12 C 0.070 3.930 13 C -0.177 4.177 14 C -0.158 4.158 15 C 0.016 3.984 16 F -0.198 7.198 17 C -0.174 4.174 18 C -0.112 4.112 19 C -0.346 4.346 20 S 0.428 5.572 21 H 0.250 0.750 22 H 0.128 0.872 23 H -0.160 1.160 24 H -0.157 1.157 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.517 0.474 -0.564 3.593 hybrid contribution -1.257 -1.133 -0.156 1.699 sum 2.259 -0.658 -0.720 2.461 Atomic orbital electron populations 1.86478 1.16509 1.84849 1.46709 1.24653 0.85521 1.11924 0.96528 0.95416 0.90314 0.73716 0.83275 1.23695 0.99017 0.96420 0.98739 1.30021 1.25829 1.10243 1.10296 1.01197 0.73203 0.70537 0.73246 1.93582 1.47682 1.69681 1.81829 1.93519 1.85698 1.85145 1.29507 1.60514 1.60487 1.22101 1.42967 1.22813 0.97705 0.91113 0.88648 1.23284 0.97171 0.96710 0.98779 1.22254 0.93863 0.79989 0.96914 1.23300 0.98359 1.00094 0.95916 1.23023 0.95493 1.00256 0.97070 1.21986 0.85755 0.94633 0.96023 1.92782 1.66465 1.76076 1.84486 1.23326 0.95267 0.99506 0.99282 1.19639 0.95452 1.01093 0.95013 1.25880 1.03710 1.00141 1.04880 1.84161 1.25901 1.28084 1.19076 0.75025 0.87222 1.15987 1.15652 0.89564 0.89116 0.89157 0.88124 0.89485 0.87475 0.87313 0.90269 0.90610 0.88980 0.89548 0.83413 0.80643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.70 9.48 -60.53 -0.57 -2.28 16 2 C -0.08 -0.11 2.34 36.01 0.08 -0.02 16 3 Si 0.68 -0.24 31.27 -169.99 -5.32 -5.55 16 4 C -0.06 -0.15 5.77 -36.00 -0.21 -0.36 16 5 C -0.67 -2.05 5.72 -41.21 -0.24 -2.29 16 6 S 2.73 11.50 4.67 -107.50 -0.50 11.00 16 7 O -0.94 -7.24 16.93 -64.82 -1.10 -8.33 16 8 O -0.95 -5.07 15.43 -62.80 -0.97 -6.04 16 9 N -1.02 -0.83 3.53 -104.45 -0.37 -1.20 16 10 C 0.12 -0.20 8.96 -2.92 -0.03 -0.23 16 11 C -0.12 0.34 8.05 -26.18 -0.21 0.13 16 12 C 0.16 -0.18 1.68 -132.15 -0.22 -0.40 16 13 C -0.14 0.12 7.24 -26.33 -0.19 -0.07 16 14 C -0.14 0.25 4.09 -89.62 -0.37 -0.11 16 15 C 0.07 -0.08 7.33 37.16 0.27 0.20 16 16 F -0.22 -0.41 17.36 2.25 0.04 -0.37 16 17 C -0.13 0.26 7.54 -26.25 -0.20 0.06 16 18 C -0.08 -0.07 9.74 -41.21 -0.40 -0.47 16 19 C -0.21 0.05 11.23 29.04 0.33 0.38 16 20 S 0.16 0.01 20.88 -107.50 -2.24 -2.23 16 21 H 0.40 -0.54 8.86 45.56 0.40 -0.14 16 22 H 0.11 -0.05 7.96 -51.93 -0.41 -0.46 16 23 H -0.24 -0.63 7.11 56.52 0.40 -0.23 16 24 H -0.23 -0.13 7.11 56.52 0.40 0.27 16 25 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 26 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 27 H 0.09 -0.41 8.14 -51.93 -0.42 -0.84 16 28 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.09 -0.14 8.14 -51.92 -0.42 -0.57 16 30 H 0.11 0.06 6.85 -51.93 -0.36 -0.30 16 31 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.08 -0.13 7.98 -51.93 -0.41 -0.54 16 34 H 0.09 -0.14 7.99 -51.93 -0.41 -0.56 16 35 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.15 -0.20 7.77 -52.49 -0.41 -0.61 16 37 H 0.18 -0.51 8.06 -52.49 -0.42 -0.94 16 LS Contribution 334.06 15.07 5.03 5.03 Total: 0.00 -10.11 334.06 -11.98 -22.09 By element: Atomic # 1 Polarization: -4.32 SS G_CDS: -4.60 Total: -8.92 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.38 Total: -3.19 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -0.37 Total: -1.20 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -2.64 Total: -16.65 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 0.04 Total: -0.37 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: -5.32 Total: -5.55 kcal Atomic # 16 Polarization: 11.51 SS G_CDS: -2.75 Total: 8.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -10.11 -11.98 -22.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.479 kcal (2) G-P(sol) polarization free energy of solvation -10.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds