Wall clock time and date at job start Fri Mar 5 2021 23:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.46794 * 2 1 4 4 C 1.50701 * 109.47011 * 240.00326 * 2 1 3 5 5 C 1.33384 * 125.20118 * 321.25411 * 4 2 1 6 6 S 1.76201 * 122.54427 * 359.97438 * 5 4 2 7 7 O 1.42103 * 106.40238 * 81.68580 * 6 5 4 8 8 O 1.42105 * 106.39861 * 308.77019 * 6 5 4 9 9 N 1.65592 * 107.22031 * 195.22989 * 6 5 4 10 10 C 1.47794 * 134.67751 * 265.92476 * 9 6 5 11 11 C 1.54133 * 86.36347 * 203.85159 * 10 9 6 12 12 C 1.46521 * 134.68178 * 85.95176 * 9 6 5 13 13 C 1.52792 * 121.37301 * 30.54864 * 12 9 6 14 14 C 1.53966 * 86.74560 * 208.96944 * 13 12 9 15 15 C 1.52999 * 113.57453 * 139.25339 * 14 13 12 16 16 F 1.39905 * 109.46993 * 181.41202 * 15 14 13 17 17 C 1.52950 * 121.41178 * 281.33849 * 12 9 6 18 18 C 1.38431 * 114.91890 * 180.25127 * 5 4 2 19 19 C 1.33386 * 114.92021 * 359.49102 * 18 5 4 20 20 S 1.75886 * 125.20230 * 141.23216 * 4 2 1 21 21 H 0.96700 * 114.00108 * 295.09069 * 1 2 3 22 22 H 1.08999 * 109.47093 * 120.00063 * 2 1 3 23 23 H 1.48494 * 110.00370 * 299.99933 * 3 2 1 24 24 H 1.48495 * 110.00100 * 61.32146 * 3 2 1 25 25 H 1.08994 * 113.73325 * 89.48583 * 10 9 6 26 26 H 1.09003 * 113.82738 * 318.22449 * 10 9 6 27 27 H 1.08996 * 113.80147 * 222.92539 * 11 10 9 28 28 H 1.09003 * 113.79851 * 91.41608 * 11 10 9 29 29 H 1.09007 * 113.67030 * 94.50491 * 13 12 9 30 30 H 1.09004 * 113.67222 * 323.43598 * 13 12 9 31 31 H 1.08996 * 113.57955 * 269.96056 * 14 13 12 32 32 H 1.09004 * 109.47079 * 61.41783 * 15 14 13 33 33 H 1.08999 * 109.47285 * 301.41059 * 15 14 13 34 34 H 1.08996 * 113.66822 * 36.56064 * 17 12 9 35 35 H 1.09000 * 113.71485 * 265.44283 * 17 12 9 36 36 H 1.07997 * 122.53702 * 179.72921 * 18 5 4 37 37 H 1.07997 * 125.20319 * 180.20525 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.3862 -1.8052 -1.7627 6 16 -0.0350 -2.5869 -1.0743 7 8 -1.1609 -1.8584 -1.5443 8 8 0.2434 -2.7824 0.3054 9 7 -0.1395 -4.0957 -1.7486 10 6 -0.8557 -4.6686 -2.9076 11 6 -0.7461 -6.0235 -2.1810 12 6 0.4399 -5.4052 -1.4385 13 6 0.7744 -5.8072 -0.0028 14 6 1.8824 -6.6926 -0.6019 15 6 3.1884 -6.6612 0.1945 16 9 4.1410 -7.4657 -0.4400 17 6 1.8806 -5.7498 -1.8192 18 6 2.0251 -2.2843 -2.8934 19 6 3.0827 -1.5724 -3.2855 20 16 3.3258 -0.2222 -2.1849 21 1 -0.3933 0.3746 0.8000 22 1 1.7924 -0.5138 0.8900 23 1 1.5614 2.4679 -1.2084 24 1 1.5879 2.4585 1.2242 25 1 -0.2907 -4.6232 -3.8386 26 1 -1.8793 -4.3096 -3.0141 27 1 -0.4725 -6.8521 -2.8341 28 1 -1.5979 -6.2485 -1.5392 29 1 -0.0180 -6.3710 0.4897 30 1 1.1520 -4.9851 0.6052 31 1 1.5533 -7.7053 -0.8344 32 1 3.0088 -7.0367 1.2019 33 1 3.5563 -5.6366 0.2488 34 1 2.5707 -4.9115 -1.7244 35 1 1.9698 -6.2679 -2.7741 36 1 1.6902 -3.1655 -3.4204 37 1 3.6985 -1.7939 -4.1446 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17321338_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:40 Heat of formation + Delta-G solvation = -49.920909 kcal Electronic energy + Delta-G solvation = -26084.530215 eV Core-core repulsion = 22192.115236 eV Total energy + Delta-G solvation = -3892.414979 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.52252 -41.60954 -39.60363 -38.24616 -37.87596 -36.92719 -36.85053 -32.06102 -29.75003 -29.05320 -27.54691 -26.89678 -24.52273 -24.31648 -22.33517 -21.66843 -20.84637 -19.11609 -19.01125 -18.44273 -18.00091 -17.63794 -17.39414 -17.01692 -16.79548 -16.41115 -16.13890 -16.10695 -15.46734 -15.12398 -15.10668 -14.91206 -14.41252 -14.36422 -14.06054 -13.78774 -13.53653 -13.35761 -13.21391 -13.16189 -13.08474 -12.88690 -12.65511 -12.43384 -12.31263 -12.16532 -12.08530 -11.82422 -11.51442 -11.47573 -11.08865 -11.06675 -10.11443 -10.09872 -9.72833 -5.25441 -0.76830 -0.53568 0.28926 0.61872 0.96155 1.14276 1.44202 1.75771 1.81399 2.69308 2.93920 3.23537 3.26337 3.38461 3.40357 3.43619 3.60451 3.68982 3.89903 4.04790 4.10080 4.16689 4.20908 4.25672 4.40639 4.51263 4.55445 4.65594 4.71807 4.73438 4.79037 4.85325 4.94311 4.98131 5.03284 5.05115 5.10489 5.23909 5.40627 5.63976 6.23676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.098 4.098 3 Si 0.761 3.239 4 C -0.089 4.089 5 C -0.682 4.682 6 S 2.733 3.267 7 O -0.986 6.986 8 O -0.973 6.973 9 N -1.027 6.027 10 C 0.113 3.887 11 C -0.108 4.108 12 C 0.153 3.847 13 C -0.146 4.146 14 C -0.130 4.130 15 C 0.064 3.936 16 F -0.233 7.233 17 C -0.132 4.132 18 C -0.097 4.097 19 C -0.207 4.207 20 S 0.193 5.807 21 H 0.411 0.589 22 H 0.122 0.878 23 H -0.280 1.280 24 H -0.244 1.244 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -2.958 -1.791 5.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.206 4.206 3 Si 0.659 3.341 4 C -0.210 4.210 5 C -0.783 4.783 6 S 2.825 3.175 7 O -0.976 6.976 8 O -0.964 6.964 9 N -0.866 5.866 10 C -0.011 4.011 11 C -0.148 4.148 12 C 0.066 3.934 13 C -0.185 4.185 14 C -0.149 4.149 15 C 0.009 3.991 16 F -0.214 7.214 17 C -0.171 4.171 18 C -0.125 4.125 19 C -0.343 4.343 20 S 0.457 5.543 21 H 0.264 0.736 22 H 0.140 0.860 23 H -0.206 1.206 24 H -0.168 1.168 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.184 0.816 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.631 -0.595 -1.609 4.938 hybrid contribution -1.592 -0.827 0.153 1.801 sum 3.038 -1.423 -1.456 3.657 Atomic orbital electron populations 1.86453 1.17824 1.85391 1.47883 1.25114 0.84790 1.13792 0.96936 0.94560 0.88798 0.70662 0.80090 1.24085 1.00353 0.96855 0.99666 1.29970 1.25842 1.10888 1.11585 1.00627 0.72923 0.71019 0.72960 1.93512 1.50169 1.71457 1.82464 1.93469 1.85959 1.85664 1.31285 1.60415 1.61014 1.21216 1.43989 1.23154 0.97663 0.91298 0.89020 1.23290 0.96235 0.96692 0.98579 1.22551 0.95048 0.78875 0.96922 1.23317 0.99051 0.99918 0.96193 1.22975 0.94507 1.00687 0.96759 1.22157 0.85750 0.94567 0.96602 1.92746 1.67230 1.76579 1.84860 1.23343 0.94337 0.99363 1.00074 1.19848 0.95837 1.02124 0.94687 1.26307 1.03409 0.99286 1.05252 1.83989 1.24171 1.27888 1.18269 0.73572 0.86029 1.20615 1.16807 0.87141 0.89774 0.86345 0.88069 0.88945 0.89368 0.86067 0.89280 0.90365 0.89526 0.87739 0.81553 0.77719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.99 9.48 -124.79 -1.18 -6.17 16 2 C -0.10 -0.43 2.34 71.24 0.17 -0.27 16 3 Si 0.76 0.03 31.27 68.60 2.15 2.17 16 4 C -0.09 -0.55 5.77 24.59 0.14 -0.41 16 5 C -0.68 -4.99 5.72 21.22 0.12 -4.86 16 6 S 2.73 28.55 4.67 -56.49 -0.26 28.28 16 7 O -0.99 -18.04 16.93 -120.69 -2.04 -20.08 16 8 O -0.97 -12.91 15.43 -122.62 -1.89 -14.80 16 9 N -1.03 -2.30 3.53 -484.36 -1.71 -4.01 16 10 C 0.11 -0.42 8.96 86.40 0.77 0.35 16 11 C -0.11 0.75 8.05 30.98 0.25 1.00 16 12 C 0.15 -0.41 1.68 3.38 0.01 -0.40 16 13 C -0.15 0.20 7.24 30.85 0.22 0.43 16 14 C -0.13 0.57 4.09 -10.15 -0.04 0.53 16 15 C 0.06 -0.14 7.33 71.98 0.53 0.38 16 16 F -0.23 -0.82 17.36 44.97 0.78 -0.04 16 17 C -0.13 0.65 7.54 30.91 0.23 0.88 16 18 C -0.10 -0.14 9.74 21.22 0.21 0.06 16 19 C -0.21 0.33 11.23 66.72 0.75 1.08 16 20 S 0.19 -0.03 20.88 -56.49 -1.18 -1.21 16 21 H 0.41 -0.04 8.86 -74.06 -0.66 -0.70 16 22 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 23 H -0.28 -1.96 7.11 99.48 0.71 -1.25 16 24 H -0.24 -0.35 7.11 99.48 0.71 0.36 16 25 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 28 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 30 H 0.09 0.24 6.85 -2.39 -0.02 0.23 16 31 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.09 -0.40 8.14 -2.38 -0.02 -0.42 16 33 H 0.08 -0.23 7.98 -2.39 -0.02 -0.25 16 34 H 0.09 -0.30 7.99 -2.39 -0.02 -0.32 16 35 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.17 -0.59 7.77 -2.91 -0.02 -0.62 16 37 H 0.21 -1.69 8.06 -2.91 -0.02 -1.72 16 Total: 0.00 -25.61 334.06 -1.51 -27.12 By element: Atomic # 1 Polarization: -10.52 SS G_CDS: 0.48 Total: -10.04 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 3.36 Total: -1.23 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: -1.71 Total: -4.01 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -5.12 Total: -41.06 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.78 Total: -0.04 kcal Atomic # 14 Polarization: 0.03 SS G_CDS: 2.15 Total: 2.17 kcal Atomic # 16 Polarization: 28.52 SS G_CDS: -1.44 Total: 27.08 kcal Total: -25.61 -1.51 -27.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.798 kcal (2) G-P(sol) polarization free energy of solvation -25.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds