Wall clock time and date at job start Fri Mar 5 2021 23:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.33392 * 125.20387 * 300.00836 * 4 2 1 6 6 C 1.38425 * 114.91961 * 179.97438 * 5 4 2 7 7 S 1.76198 * 122.53712 * 180.02562 * 6 5 4 8 8 O 1.42102 * 106.40064 * 203.53814 * 7 6 5 9 9 O 1.42097 * 106.40484 * 336.46116 * 7 6 5 10 10 N 1.65596 * 107.21738 * 90.00247 * 7 6 5 11 11 C 1.47222 * 136.18407 * 89.99653 * 10 7 6 12 12 C 1.53623 * 88.20556 * 206.41981 * 11 10 7 13 13 C 1.46283 * 136.17892 * 269.63162 * 10 7 6 14 14 C 1.53075 * 120.98782 * 27.44839 * 13 10 7 15 15 C 1.53919 * 86.84367 * 259.66461 * 14 13 10 16 16 C 1.52998 * 113.65883 * 220.52941 * 15 14 13 17 17 F 1.39902 * 109.47096 * 277.70485 * 16 15 14 18 18 C 1.53077 * 120.98662 * 279.41072 * 13 10 7 19 19 C 1.33390 * 114.92181 * 359.97438 * 6 5 4 20 20 S 1.75883 * 125.20254 * 119.69255 * 4 2 1 21 21 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 22 22 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 23 23 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 24 24 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 25 25 H 1.07996 * 122.53741 * 359.97438 * 5 4 2 26 26 H 1.09004 * 113.43381 * 321.25994 * 11 10 7 27 27 H 1.09003 * 113.43065 * 91.58272 * 11 10 7 28 28 H 1.09003 * 114.27988 * 88.16894 * 12 11 10 29 29 H 1.09000 * 114.28036 * 221.01553 * 12 11 10 30 30 H 1.08999 * 113.65068 * 14.14803 * 14 13 10 31 31 H 1.09003 * 113.65264 * 145.17592 * 14 13 10 32 32 H 1.09000 * 113.59003 * 89.72299 * 15 14 13 33 33 H 1.08996 * 109.47324 * 37.70285 * 16 15 14 34 34 H 1.08998 * 109.47437 * 157.71022 * 16 15 14 35 35 H 1.08999 * 113.65659 * 214.82971 * 18 13 10 36 36 H 1.09003 * 113.64879 * 345.75571 * 18 13 10 37 37 H 1.07999 * 125.20680 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 1.6740 -1.9813 -1.5434 6 6 2.2442 -2.4174 -2.7270 7 16 2.0335 -4.0588 -3.3321 8 8 3.1360 -4.3142 -4.1915 9 8 1.7241 -4.8657 -2.2041 10 7 0.6835 -4.0582 -4.2911 11 6 0.3933 -3.8329 -5.7167 12 6 -1.0210 -3.3925 -5.3095 13 6 -0.7483 -4.2876 -4.0981 14 6 -1.4156 -4.0130 -2.7481 15 6 -1.3356 -5.5293 -2.4963 16 6 -2.5849 -6.1075 -1.8285 17 9 -2.5137 -5.8998 -0.4469 18 6 -1.3162 -5.7072 -4.0250 19 6 2.9643 -1.5006 -3.3753 20 16 2.9407 0.0113 -2.4769 21 1 -0.3934 0.4417 0.7649 22 1 1.7923 -0.5138 0.8901 23 1 3.5346 1.7703 0.0322 24 1 1.5616 2.4678 -1.2086 25 1 1.0667 -2.6214 -0.9207 26 1 0.9863 -3.0321 -6.1585 27 1 0.4084 -4.7460 -6.3117 28 1 -1.1104 -2.3314 -5.0764 29 1 -1.8107 -3.7581 -5.9658 30 1 -0.8004 -3.4237 -2.0681 31 1 -2.4352 -3.6369 -2.8327 32 1 -0.4123 -5.8424 -2.0089 33 1 -3.4711 -5.6122 -2.2252 34 1 -2.6442 -7.1766 -2.0325 35 1 -2.3079 -5.8049 -4.4666 36 1 -0.6219 -6.4741 -4.3686 37 1 3.4796 -1.6609 -4.3108 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17321338_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:44 Heat of formation + Delta-G solvation = -46.149873 kcal Electronic energy + Delta-G solvation = -25596.174590 eV Core-core repulsion = 21703.923135 eV Total energy + Delta-G solvation = -3892.251455 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -48.36523 -41.81830 -39.43797 -38.26599 -37.60367 -37.00587 -36.79523 -32.01448 -29.96920 -29.07295 -27.29453 -26.93235 -24.86930 -24.55093 -22.14514 -21.35478 -20.94382 -19.28778 -18.89998 -18.51825 -17.96196 -17.86154 -17.16376 -16.89457 -16.70450 -16.37374 -16.19426 -16.01910 -15.62210 -15.40020 -14.83398 -14.45874 -14.28447 -14.22222 -14.11859 -14.03416 -13.65958 -13.52762 -13.21829 -13.11173 -13.03374 -12.88560 -12.75756 -12.63957 -12.23203 -12.19226 -12.07023 -11.80284 -11.66299 -11.42765 -10.93130 -10.64005 -10.26688 -10.12169 -9.87580 -5.37635 -0.86513 -0.50557 0.27535 0.54750 0.96764 1.06895 1.44601 1.74934 1.91978 2.67905 2.95411 3.16084 3.19471 3.33577 3.39731 3.50023 3.56067 3.63446 3.79170 3.95497 4.04496 4.13499 4.16371 4.22276 4.26759 4.34569 4.43310 4.56657 4.58247 4.63788 4.69676 4.70801 4.85694 4.88574 4.90564 4.94992 5.04635 5.09065 5.37048 5.58240 6.42977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.036 4.036 3 Si 0.673 3.327 4 C -0.181 4.181 5 C -0.038 4.038 6 C -0.682 4.682 7 S 2.727 3.273 8 O -0.950 6.950 9 O -0.940 6.940 10 N -1.022 6.022 11 C 0.130 3.870 12 C -0.136 4.136 13 C 0.164 3.836 14 C -0.138 4.138 15 C -0.154 4.154 16 C 0.073 3.927 17 F -0.216 7.216 18 C -0.127 4.127 19 C -0.082 4.082 20 S 0.138 5.862 21 H 0.386 0.614 22 H 0.087 0.913 23 H -0.238 1.238 24 H -0.235 1.235 25 H 0.158 0.842 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 4.115 -1.237 6.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.149 4.149 3 Si 0.572 3.428 4 C -0.299 4.299 5 C -0.067 4.067 6 C -0.782 4.782 7 S 2.817 3.183 8 O -0.941 6.941 9 O -0.931 6.931 10 N -0.859 5.859 11 C 0.005 3.995 12 C -0.176 4.176 13 C 0.075 3.925 14 C -0.176 4.176 15 C -0.172 4.172 16 C 0.019 3.981 17 F -0.198 7.198 18 C -0.166 4.166 19 C -0.221 4.221 20 S 0.402 5.598 21 H 0.235 0.765 22 H 0.105 0.895 23 H -0.162 1.162 24 H -0.158 1.158 25 H 0.176 0.824 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.251 5.179 -2.074 6.016 hybrid contribution -0.456 -1.136 0.349 1.273 sum -2.707 4.042 -1.725 5.162 Atomic orbital electron populations 1.86494 1.16578 1.81902 1.49894 1.23999 0.86057 1.09742 0.95097 0.94718 0.81954 0.77987 0.88176 1.23686 1.07328 0.97529 1.01325 1.19570 0.97997 0.94767 0.94318 1.30095 1.13919 1.26514 1.07666 1.01024 0.71509 0.73059 0.72716 1.93599 1.49816 1.83700 1.66949 1.93577 1.83745 1.64809 1.50955 1.59903 1.20190 1.85414 1.20428 1.22477 0.95220 1.01176 0.80627 1.23411 0.97124 1.00591 0.96484 1.21738 0.78401 0.96330 0.96021 1.23303 1.02199 0.96420 0.95724 1.23392 1.00621 0.96808 0.96418 1.21966 0.98230 1.01895 0.76046 1.92783 1.97653 1.96659 1.32663 1.23159 1.02312 0.95877 0.95287 1.25905 0.98269 0.95476 1.02434 1.84437 1.47582 1.13194 1.14627 0.76535 0.89484 1.16214 1.15837 0.82448 0.90204 0.89171 0.88312 0.88980 0.90491 0.87744 0.86204 0.90644 0.90631 0.87666 0.90070 0.79724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.20 12.83 -35.23 -0.45 -0.25 16 2 C -0.04 0.01 2.95 36.00 0.11 0.11 16 3 Si 0.67 -0.91 30.97 -169.99 -5.26 -6.17 16 4 C -0.18 -0.43 5.76 -36.01 -0.21 -0.64 16 5 C -0.04 -0.11 9.56 -41.21 -0.39 -0.50 16 6 C -0.68 -1.83 5.89 -41.21 -0.24 -2.07 16 7 S 2.73 9.02 6.33 -107.50 -0.68 8.34 16 8 O -0.95 -5.44 17.64 -57.17 -1.01 -6.45 16 9 O -0.94 -5.15 16.11 -57.17 -0.92 -6.07 16 10 N -1.02 -0.53 4.23 -114.03 -0.48 -1.02 16 11 C 0.13 -0.26 8.72 -9.79 -0.09 -0.35 16 12 C -0.14 0.42 8.25 -26.37 -0.22 0.21 16 13 C 0.16 -0.16 1.53 -138.30 -0.21 -0.38 16 14 C -0.14 0.04 7.52 -26.21 -0.20 -0.16 16 15 C -0.15 -0.06 4.05 -89.67 -0.36 -0.42 16 16 C 0.07 -0.02 7.35 37.16 0.27 0.26 16 17 F -0.22 -0.80 17.36 2.25 0.04 -0.76 16 18 C -0.13 0.22 7.52 -26.22 -0.20 0.03 16 19 C -0.08 -0.14 10.70 29.04 0.31 0.17 16 20 S 0.14 0.26 20.58 -107.50 -2.21 -1.96 16 21 H 0.39 -2.10 8.74 45.56 0.40 -1.70 16 22 H 0.09 -0.15 7.96 -51.93 -0.41 -0.57 16 23 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 24 H -0.23 -0.33 7.11 56.52 0.40 0.07 16 25 H 0.16 0.41 7.71 -52.49 -0.40 0.00 16 26 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 27 H 0.09 -0.27 8.14 -51.93 -0.42 -0.70 16 28 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.09 -0.44 8.14 -51.93 -0.42 -0.86 16 30 H 0.08 0.09 7.89 -51.93 -0.41 -0.32 16 31 H 0.10 -0.21 7.97 -51.93 -0.41 -0.62 16 32 H 0.12 0.36 6.60 -51.93 -0.34 0.02 16 33 H 0.08 -0.18 7.95 -51.93 -0.41 -0.59 16 34 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.11 -0.43 8.10 -51.93 -0.42 -0.85 16 36 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.19 -0.11 8.00 -52.49 -0.42 -0.53 16 LS Contribution 339.86 15.07 5.12 5.12 Total: 0.00 -10.01 339.86 -11.86 -21.87 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: -4.57 Total: -8.92 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.43 Total: -3.74 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -0.48 Total: -1.02 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -2.38 Total: -12.77 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 0.04 Total: -0.76 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.26 Total: -6.17 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -2.89 Total: 6.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -10.01 -11.86 -21.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.278 kcal (2) G-P(sol) polarization free energy of solvation -10.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds