Wall clock time and date at job start Fri Mar 5 2021 23:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.33392 * 125.20387 * 300.00836 * 4 2 1 6 6 C 1.38425 * 114.91961 * 179.97438 * 5 4 2 7 7 S 1.76198 * 122.53712 * 180.02562 * 6 5 4 8 8 O 1.42102 * 106.40064 * 203.53814 * 7 6 5 9 9 O 1.42097 * 106.40484 * 336.46116 * 7 6 5 10 10 N 1.65596 * 107.21738 * 90.00247 * 7 6 5 11 11 C 1.47222 * 136.18407 * 89.99653 * 10 7 6 12 12 C 1.53623 * 88.20556 * 206.41981 * 11 10 7 13 13 C 1.46283 * 136.17892 * 269.63162 * 10 7 6 14 14 C 1.53075 * 120.98782 * 27.44839 * 13 10 7 15 15 C 1.53919 * 86.84367 * 259.66461 * 14 13 10 16 16 C 1.52998 * 113.65883 * 220.52941 * 15 14 13 17 17 F 1.39902 * 109.47096 * 277.70485 * 16 15 14 18 18 C 1.53077 * 120.98662 * 279.41072 * 13 10 7 19 19 C 1.33390 * 114.92181 * 359.97438 * 6 5 4 20 20 S 1.75883 * 125.20254 * 119.69255 * 4 2 1 21 21 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 22 22 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 23 23 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 24 24 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 25 25 H 1.07996 * 122.53741 * 359.97438 * 5 4 2 26 26 H 1.09004 * 113.43381 * 321.25994 * 11 10 7 27 27 H 1.09003 * 113.43065 * 91.58272 * 11 10 7 28 28 H 1.09003 * 114.27988 * 88.16894 * 12 11 10 29 29 H 1.09000 * 114.28036 * 221.01553 * 12 11 10 30 30 H 1.08999 * 113.65068 * 14.14803 * 14 13 10 31 31 H 1.09003 * 113.65264 * 145.17592 * 14 13 10 32 32 H 1.09000 * 113.59003 * 89.72299 * 15 14 13 33 33 H 1.08996 * 109.47324 * 37.70285 * 16 15 14 34 34 H 1.08998 * 109.47437 * 157.71022 * 16 15 14 35 35 H 1.08999 * 113.65659 * 214.82971 * 18 13 10 36 36 H 1.09003 * 113.64879 * 345.75571 * 18 13 10 37 37 H 1.07999 * 125.20680 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 1.6740 -1.9813 -1.5434 6 6 2.2442 -2.4174 -2.7270 7 16 2.0335 -4.0588 -3.3321 8 8 3.1360 -4.3142 -4.1915 9 8 1.7241 -4.8657 -2.2041 10 7 0.6835 -4.0582 -4.2911 11 6 0.3933 -3.8329 -5.7167 12 6 -1.0210 -3.3925 -5.3095 13 6 -0.7483 -4.2876 -4.0981 14 6 -1.4156 -4.0130 -2.7481 15 6 -1.3356 -5.5293 -2.4963 16 6 -2.5849 -6.1075 -1.8285 17 9 -2.5137 -5.8998 -0.4469 18 6 -1.3162 -5.7072 -4.0250 19 6 2.9643 -1.5006 -3.3753 20 16 2.9407 0.0113 -2.4769 21 1 -0.3934 0.4417 0.7649 22 1 1.7923 -0.5138 0.8901 23 1 3.5346 1.7703 0.0322 24 1 1.5616 2.4678 -1.2086 25 1 1.0667 -2.6214 -0.9207 26 1 0.9863 -3.0321 -6.1585 27 1 0.4084 -4.7460 -6.3117 28 1 -1.1104 -2.3314 -5.0764 29 1 -1.8107 -3.7581 -5.9658 30 1 -0.8004 -3.4237 -2.0681 31 1 -2.4352 -3.6369 -2.8327 32 1 -0.4123 -5.8424 -2.0089 33 1 -3.4711 -5.6122 -2.2252 34 1 -2.6442 -7.1766 -2.0325 35 1 -2.3079 -5.8049 -4.4666 36 1 -0.6219 -6.4741 -4.3686 37 1 3.4796 -1.6609 -4.3108 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17321338_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:44 Heat of formation + Delta-G solvation = -48.251672 kcal Electronic energy + Delta-G solvation = -25596.265731 eV Core-core repulsion = 21703.923135 eV Total energy + Delta-G solvation = -3892.342596 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.51385 -41.72177 -39.55606 -38.58000 -37.59387 -37.22081 -36.86097 -32.11447 -29.91305 -29.00649 -27.37231 -26.83522 -24.99068 -24.42988 -22.11604 -21.37571 -21.03870 -19.44277 -19.04905 -18.48003 -18.04969 -17.95735 -17.17374 -16.92057 -16.83064 -16.40223 -16.23665 -16.01006 -15.67111 -15.47957 -14.91230 -14.55987 -14.39879 -14.32296 -14.22599 -14.05285 -13.62054 -13.52198 -13.46934 -13.36270 -13.08659 -12.96632 -12.74959 -12.67688 -12.27503 -12.18514 -11.98924 -11.90552 -11.66901 -11.38638 -10.84221 -10.65769 -10.29684 -10.12793 -10.02549 -5.29450 -1.05096 -0.67362 0.13542 0.39616 0.80011 1.09678 1.50063 1.77707 1.83125 2.47669 2.83707 3.22819 3.26868 3.41660 3.49676 3.59270 3.63826 3.66389 3.76704 3.96754 4.03139 4.18364 4.24568 4.32385 4.33609 4.45837 4.48760 4.62193 4.64899 4.70951 4.76428 4.77649 4.86543 4.91907 4.97356 5.01996 5.07857 5.25809 5.45150 5.64384 6.76839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.049 4.049 3 Si 0.762 3.238 4 C -0.193 4.193 5 C -0.052 4.052 6 C -0.689 4.689 7 S 2.736 3.264 8 O -0.981 6.981 9 O -0.973 6.973 10 N -1.028 6.028 11 C 0.119 3.881 12 C -0.118 4.118 13 C 0.156 3.844 14 C -0.141 4.141 15 C -0.164 4.164 16 C 0.067 3.933 17 F -0.242 7.242 18 C -0.116 4.116 19 C -0.081 4.081 20 S 0.138 5.862 21 H 0.407 0.593 22 H 0.104 0.896 23 H -0.268 1.268 24 H -0.272 1.272 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 4.812 -2.245 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.161 4.161 3 Si 0.664 3.336 4 C -0.310 4.310 5 C -0.081 4.081 6 C -0.789 4.789 7 S 2.828 3.172 8 O -0.972 6.972 9 O -0.963 6.963 10 N -0.868 5.868 11 C -0.004 4.004 12 C -0.158 4.158 13 C 0.068 3.932 14 C -0.179 4.179 15 C -0.183 4.183 16 C 0.012 3.988 17 F -0.224 7.224 18 C -0.155 4.155 19 C -0.220 4.220 20 S 0.401 5.599 21 H 0.259 0.741 22 H 0.121 0.879 23 H -0.194 1.194 24 H -0.197 1.197 25 H 0.170 0.830 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.139 0.861 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.800 5.851 -3.057 7.617 hybrid contribution -0.012 -1.333 0.654 1.485 sum -3.812 4.517 -2.403 6.381 Atomic orbital electron populations 1.86444 1.16352 1.82542 1.51537 1.24262 0.86466 1.10767 0.94570 0.93685 0.78822 0.75228 0.85861 1.24103 1.07095 0.97586 1.02229 1.19608 0.98619 0.95183 0.94669 1.29987 1.14688 1.26236 1.07997 1.00367 0.71620 0.73030 0.72195 1.93547 1.51739 1.84401 1.67495 1.93535 1.84277 1.66099 1.52419 1.59799 1.20081 1.85367 1.21537 1.22814 0.96133 1.02234 0.79246 1.23388 0.97010 1.00224 0.95140 1.22012 0.77251 0.97408 0.96512 1.23389 1.03106 0.95606 0.95830 1.23329 0.99400 0.97572 0.97990 1.22259 0.98963 1.03126 0.74414 1.92727 1.97791 1.96840 1.35008 1.23207 1.03831 0.95091 0.93352 1.26179 0.97727 0.95120 1.02966 1.84424 1.47552 1.13279 1.14655 0.74053 0.87870 1.19388 1.19749 0.83042 0.89356 0.87980 0.88173 0.86113 0.92714 0.85559 0.89827 0.87751 0.89386 0.84295 0.90721 0.77872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.40 12.83 -148.98 -1.91 -1.51 16 2 C -0.05 0.01 2.95 71.23 0.21 0.22 16 3 Si 0.76 -2.07 30.97 68.60 2.12 0.05 16 4 C -0.19 -1.12 5.76 24.59 0.14 -0.98 16 5 C -0.05 -0.40 9.56 21.22 0.20 -0.20 16 6 C -0.69 -4.88 5.89 21.22 0.12 -4.76 16 7 S 2.74 23.86 6.33 -56.49 -0.36 23.50 16 8 O -0.98 -13.14 17.64 -128.00 -2.26 -15.40 16 9 O -0.97 -13.77 16.11 -128.00 -2.06 -15.83 16 10 N -1.03 -1.77 4.23 -514.68 -2.18 -3.95 16 11 C 0.12 -0.58 8.72 82.26 0.72 0.13 16 12 C -0.12 0.96 8.25 30.83 0.25 1.22 16 13 C 0.16 -0.38 1.53 -0.48 0.00 -0.38 16 14 C -0.14 0.04 7.52 30.93 0.23 0.27 16 15 C -0.16 -0.26 4.05 -10.18 -0.04 -0.30 16 16 C 0.07 -0.03 7.35 71.98 0.53 0.50 16 17 F -0.24 -2.08 17.36 44.97 0.78 -1.30 16 18 C -0.12 0.51 7.52 30.93 0.23 0.74 16 19 C -0.08 -0.35 10.70 66.72 0.71 0.36 16 20 S 0.14 0.62 20.58 -56.49 -1.16 -0.54 16 21 H 0.41 -4.68 8.74 -74.06 -0.65 -5.33 16 22 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 23 H -0.27 -0.57 7.11 99.48 0.71 0.14 16 24 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 25 H 0.15 1.23 7.71 -2.91 -0.02 1.21 16 26 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 27 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 29 H 0.12 -1.60 8.14 -2.39 -0.02 -1.62 16 30 H 0.05 0.24 7.89 -2.39 -0.02 0.22 16 31 H 0.13 -0.66 7.97 -2.39 -0.02 -0.68 16 32 H 0.08 0.76 6.60 -2.39 -0.02 0.75 16 33 H 0.10 -0.67 7.95 -2.39 -0.02 -0.69 16 34 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.14 -1.56 8.10 -2.39 -0.02 -1.57 16 36 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.20 -0.11 8.00 -2.91 -0.02 -0.14 16 Total: 0.00 -25.98 339.86 -3.22 -29.20 By element: Atomic # 1 Polarization: -11.52 SS G_CDS: 0.49 Total: -11.03 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 3.32 Total: -3.19 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: -2.18 Total: -3.95 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -6.23 Total: -32.75 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.12 Total: 0.05 kcal Atomic # 16 Polarization: 24.48 SS G_CDS: -1.52 Total: 22.96 kcal Total: -25.98 -3.22 -29.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.052 kcal (2) G-P(sol) polarization free energy of solvation -25.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds