Wall clock time and date at job start Fri Mar 5 2021 23:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47356 * 2 1 4 4 C 1.50689 * 109.47361 * 239.99423 * 2 1 3 5 5 C 1.38217 * 120.00374 * 282.58592 * 4 2 1 6 6 S 1.76197 * 119.99703 * 359.97438 * 5 4 2 7 7 O 1.42108 * 106.40124 * 178.55354 * 6 5 4 8 8 O 1.42092 * 106.40277 * 45.63536 * 6 5 4 9 9 N 1.65600 * 107.21840 * 292.09294 * 6 5 4 10 10 C 1.47792 * 134.67899 * 99.75965 * 9 6 5 11 11 C 1.54136 * 86.36252 * 203.85343 * 10 9 6 12 12 C 1.46525 * 134.67939 * 279.79278 * 9 6 5 13 13 C 1.52797 * 121.37396 * 30.54858 * 12 9 6 14 14 C 1.53974 * 86.74123 * 208.97249 * 13 12 9 15 15 C 1.53008 * 113.57576 * 139.25525 * 14 13 12 16 16 F 1.39898 * 109.47148 * 176.39581 * 15 14 13 17 17 C 1.52954 * 121.40854 * 281.33716 * 12 9 6 18 18 C 1.38259 * 120.00119 * 179.72210 * 5 4 2 19 19 C 1.38213 * 119.99752 * 0.25142 * 18 5 4 20 20 C 1.38261 * 120.00422 * 0.02726 * 19 18 5 21 21 C 1.38209 * 119.99539 * 359.96920 * 20 19 18 22 22 H 0.96706 * 113.99699 * 59.99676 * 1 2 3 23 23 H 1.09002 * 109.46642 * 120.00053 * 2 1 3 24 24 H 1.48504 * 109.99975 * 64.88524 * 3 2 1 25 25 H 1.48503 * 110.00355 * 186.20431 * 3 2 1 26 26 H 1.09004 * 113.72439 * 89.49094 * 10 9 6 27 27 H 1.08995 * 113.83030 * 318.23175 * 10 9 6 28 28 H 1.08999 * 113.80069 * 222.92643 * 11 10 9 29 29 H 1.08993 * 113.80231 * 91.42302 * 11 10 9 30 30 H 1.08994 * 113.67465 * 94.50728 * 13 12 9 31 31 H 1.09009 * 113.66800 * 323.42942 * 13 12 9 32 32 H 1.08998 * 113.57497 * 269.95340 * 14 13 12 33 33 H 1.09003 * 109.47122 * 56.39288 * 15 14 13 34 34 H 1.08996 * 109.47246 * 296.39536 * 15 14 13 35 35 H 1.09001 * 113.67067 * 36.56292 * 17 12 9 36 36 H 1.09002 * 113.71517 * 265.43916 * 17 12 9 37 37 H 1.08001 * 120.00142 * 180.27361 * 18 5 4 38 38 H 1.08000 * 119.99761 * 179.97438 * 19 18 5 39 39 H 1.07995 * 120.00019 * 179.97438 * 20 19 18 40 40 H 1.08007 * 119.99667 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.9159 -2.0914 -1.2857 6 16 1.3094 -3.0212 0.0826 7 8 1.3927 -4.3891 -0.2932 8 8 0.0973 -2.3984 0.4852 9 7 2.3789 -2.8128 1.3296 10 6 2.4135 -1.9625 2.5379 11 6 3.9456 -2.1236 2.4879 12 6 3.6758 -3.3961 1.6829 13 6 4.6505 -3.8776 0.6092 14 6 5.1555 -4.8952 1.6486 15 6 5.4342 -6.2810 1.0629 16 9 5.9637 -7.1099 2.0578 17 6 3.7786 -4.7792 2.3278 18 6 2.3715 -2.7431 -2.4168 19 6 2.8472 -2.0137 -3.4900 20 6 2.8681 -0.6325 -3.4324 21 6 2.4126 0.0189 -2.3018 22 1 -0.3933 0.4418 -0.7651 23 1 1.7923 -0.5139 0.8900 24 1 1.6610 2.4327 1.2636 25 1 3.5273 1.7728 -0.1508 26 1 1.9523 -2.4231 3.4116 27 1 2.0740 -0.9409 2.3673 28 1 4.4006 -2.3071 3.4612 29 1 4.4517 -1.3429 1.9201 30 1 5.3951 -3.1328 0.3283 31 1 4.1625 -4.3362 -0.2509 32 1 5.9766 -4.5221 2.2607 33 1 6.1492 -6.1927 0.2449 34 1 4.5051 -6.7108 0.6885 35 1 3.0444 -5.4924 1.9532 36 1 3.8286 -4.7527 3.4164 37 1 2.3553 -3.8221 -2.4618 38 1 3.2035 -2.5228 -4.3734 39 1 3.2403 -0.0626 -4.2709 40 1 2.4293 1.0979 -2.2566 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17321338_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:53 Heat of formation + Delta-G solvation = -48.083355 kcal Electronic energy + Delta-G solvation = -27821.766798 eV Core-core repulsion = 23840.279255 eV Total energy + Delta-G solvation = -3981.487543 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -48.48138 -41.79309 -40.76641 -38.38157 -37.37731 -37.08805 -36.67601 -32.89992 -32.48907 -29.84478 -29.22463 -27.13484 -27.04925 -24.71685 -24.49960 -22.88116 -22.43562 -20.99350 -19.73130 -18.76827 -18.07765 -17.97581 -17.44272 -17.26604 -17.10651 -16.76377 -16.62119 -16.17484 -15.96084 -15.86658 -15.53357 -15.24898 -15.05015 -14.86388 -14.43016 -14.28270 -13.97942 -13.72053 -13.57440 -13.46674 -13.15107 -12.97309 -12.92120 -12.74937 -12.64000 -12.38268 -12.33524 -12.17434 -12.09432 -11.70142 -11.63168 -11.52732 -11.23184 -10.56791 -10.48193 -10.20291 -10.14259 -5.21486 -0.72296 -0.30965 0.01989 1.07383 1.48598 1.79451 1.80410 2.31309 2.74676 3.03653 3.14528 3.21282 3.24385 3.25086 3.37019 3.43701 3.46886 3.65928 3.74250 3.76984 3.96440 4.05628 4.07814 4.08366 4.10934 4.19651 4.34837 4.41050 4.46019 4.52180 4.56823 4.59503 4.61670 4.68050 4.70976 4.80230 4.89818 4.94446 4.99428 4.99982 5.14665 5.24494 5.46392 5.60550 6.58280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.499 6.499 2 C -0.111 4.111 3 Si 0.691 3.309 4 C -0.017 4.017 5 C -0.653 4.653 6 S 2.693 3.307 7 O -0.958 6.958 8 O -0.917 6.917 9 N -1.028 6.028 10 C 0.124 3.876 11 C -0.126 4.126 12 C 0.162 3.838 13 C -0.140 4.140 14 C -0.136 4.136 15 C 0.070 3.930 16 F -0.216 7.216 17 C -0.131 4.131 18 C -0.023 4.023 19 C -0.134 4.134 20 C -0.058 4.058 21 C -0.137 4.137 22 H 0.373 0.627 23 H 0.116 0.884 24 H -0.245 1.245 25 H -0.252 1.252 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 5.041 -2.815 6.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.303 6.303 2 C -0.221 4.221 3 Si 0.591 3.409 4 C -0.019 4.019 5 C -0.739 4.739 6 S 2.786 3.214 7 O -0.949 6.949 8 O -0.907 6.907 9 N -0.865 5.865 10 C 0.000 4.000 11 C -0.165 4.165 12 C 0.074 3.926 13 C -0.179 4.179 14 C -0.155 4.155 15 C 0.016 3.984 16 F -0.197 7.197 17 C -0.170 4.170 18 C -0.042 4.042 19 C -0.153 4.153 20 C -0.076 4.076 21 C -0.155 4.155 22 H 0.219 0.781 23 H 0.132 0.868 24 H -0.169 1.169 25 H -0.177 1.177 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.606 4.786 -2.000 6.317 hybrid contribution 0.520 -0.286 -0.574 0.825 sum 4.126 4.500 -2.573 6.626 Atomic orbital electron populations 1.86875 1.14143 1.81195 1.48073 1.25715 0.87977 1.11471 0.96931 0.94524 0.81365 0.77663 0.87362 1.20046 0.93488 0.92261 0.96095 1.30894 1.17943 1.06269 1.18819 1.02020 0.72955 0.73638 0.72793 1.93563 1.86232 1.31783 1.83325 1.93725 1.39169 1.76882 1.80927 1.60284 1.35845 1.54873 1.35533 1.22870 0.95837 0.94872 0.86450 1.23380 0.96140 0.96016 1.00981 1.22159 0.80966 0.93907 0.95576 1.23229 0.98520 0.98712 0.97444 1.22993 0.98566 0.95197 0.98779 1.22004 0.99838 0.88078 0.88529 1.92782 1.88502 1.73954 1.64506 1.23321 0.96606 0.95609 1.01451 1.21058 0.91221 1.00716 0.91188 1.21395 1.00472 0.94353 0.99071 1.21491 0.94102 0.94817 0.97183 1.21126 1.00893 0.99602 0.93869 0.78083 0.86753 1.16935 1.17664 0.88737 0.89740 0.89006 0.88520 0.89524 0.88662 0.87283 0.90446 0.90210 0.88279 0.89624 0.83871 0.84577 0.84525 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -0.89 10.62 -57.86 -0.61 -1.51 16 2 C -0.11 -0.04 1.81 36.00 0.07 0.02 16 3 Si 0.69 -1.17 29.96 -169.99 -5.09 -6.26 16 4 C -0.02 -0.01 5.23 -104.63 -0.55 -0.56 16 5 C -0.65 -1.17 5.92 -39.58 -0.23 -1.41 16 6 S 2.69 9.61 5.48 -107.50 -0.59 9.02 16 7 O -0.96 -5.33 16.97 -57.17 -0.97 -6.30 16 8 O -0.92 -5.85 14.68 -66.46 -0.98 -6.82 16 9 N -1.03 -0.86 3.73 -104.44 -0.39 -1.25 16 10 C 0.12 -0.15 8.19 -2.92 -0.02 -0.17 16 11 C -0.13 0.35 8.05 -26.18 -0.21 0.14 16 12 C 0.16 -0.15 1.69 -132.14 -0.22 -0.37 16 13 C -0.14 0.22 7.54 -26.33 -0.20 0.02 16 14 C -0.14 0.20 4.09 -89.62 -0.37 -0.16 16 15 C 0.07 -0.04 7.37 37.16 0.27 0.23 16 16 F -0.22 -0.55 17.36 2.25 0.04 -0.51 16 17 C -0.13 0.09 7.54 -26.25 -0.20 -0.11 16 18 C -0.02 -0.02 9.55 -39.58 -0.38 -0.39 16 19 C -0.13 0.15 10.05 -39.58 -0.40 -0.25 16 20 C -0.06 0.11 10.05 -39.58 -0.40 -0.29 16 21 C -0.14 0.19 8.66 -39.58 -0.34 -0.15 16 22 H 0.37 -0.90 8.70 45.56 0.40 -0.50 16 23 H 0.12 0.06 3.10 -51.93 -0.16 -0.10 16 24 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 25 H -0.25 0.03 7.11 56.52 0.40 0.43 16 26 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 27 H 0.08 -0.14 5.78 -51.93 -0.30 -0.44 16 28 H 0.09 -0.38 8.14 -51.93 -0.42 -0.81 16 29 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 30 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.09 -0.09 8.10 -51.92 -0.42 -0.51 16 32 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 33 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.08 -0.07 7.88 -51.93 -0.41 -0.47 16 35 H 0.10 0.06 7.92 -51.93 -0.41 -0.35 16 36 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 37 H 0.14 0.01 7.33 -52.49 -0.38 -0.37 16 38 H 0.14 -0.45 8.06 -52.49 -0.42 -0.87 16 39 H 0.14 -0.61 8.06 -52.49 -0.42 -1.04 16 40 H 0.14 -0.56 5.20 -52.48 -0.27 -0.83 16 LS Contribution 335.84 15.07 5.06 5.06 Total: 0.00 -9.91 335.84 -11.68 -21.59 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: -4.97 Total: -9.57 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.18 Total: -3.45 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -0.39 Total: -1.25 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -2.56 Total: -14.63 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.04 Total: -0.51 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -5.09 Total: -6.26 kcal Atomic # 16 Polarization: 9.61 SS G_CDS: -0.59 Total: 9.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -9.91 -11.68 -21.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.495 kcal (2) G-P(sol) polarization free energy of solvation -9.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds