Wall clock time and date at job start Fri Mar 5 2021 23:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47356 * 2 1 4 4 C 1.50689 * 109.47361 * 239.99423 * 2 1 3 5 5 C 1.38217 * 120.00374 * 282.58592 * 4 2 1 6 6 S 1.76197 * 119.99703 * 359.97438 * 5 4 2 7 7 O 1.42108 * 106.40124 * 178.55354 * 6 5 4 8 8 O 1.42092 * 106.40277 * 45.63536 * 6 5 4 9 9 N 1.65600 * 107.21840 * 292.09294 * 6 5 4 10 10 C 1.47792 * 134.67899 * 99.75965 * 9 6 5 11 11 C 1.54136 * 86.36252 * 203.85343 * 10 9 6 12 12 C 1.46525 * 134.67939 * 279.79278 * 9 6 5 13 13 C 1.52797 * 121.37396 * 30.54858 * 12 9 6 14 14 C 1.53974 * 86.74123 * 208.97249 * 13 12 9 15 15 C 1.53008 * 113.57576 * 139.25525 * 14 13 12 16 16 F 1.39898 * 109.47148 * 176.39581 * 15 14 13 17 17 C 1.52954 * 121.40854 * 281.33716 * 12 9 6 18 18 C 1.38259 * 120.00119 * 179.72210 * 5 4 2 19 19 C 1.38213 * 119.99752 * 0.25142 * 18 5 4 20 20 C 1.38261 * 120.00422 * 0.02726 * 19 18 5 21 21 C 1.38209 * 119.99539 * 359.96920 * 20 19 18 22 22 H 0.96706 * 113.99699 * 59.99676 * 1 2 3 23 23 H 1.09002 * 109.46642 * 120.00053 * 2 1 3 24 24 H 1.48504 * 109.99975 * 64.88524 * 3 2 1 25 25 H 1.48503 * 110.00355 * 186.20431 * 3 2 1 26 26 H 1.09004 * 113.72439 * 89.49094 * 10 9 6 27 27 H 1.08995 * 113.83030 * 318.23175 * 10 9 6 28 28 H 1.08999 * 113.80069 * 222.92643 * 11 10 9 29 29 H 1.08993 * 113.80231 * 91.42302 * 11 10 9 30 30 H 1.08994 * 113.67465 * 94.50728 * 13 12 9 31 31 H 1.09009 * 113.66800 * 323.42942 * 13 12 9 32 32 H 1.08998 * 113.57497 * 269.95340 * 14 13 12 33 33 H 1.09003 * 109.47122 * 56.39288 * 15 14 13 34 34 H 1.08996 * 109.47246 * 296.39536 * 15 14 13 35 35 H 1.09001 * 113.67067 * 36.56292 * 17 12 9 36 36 H 1.09002 * 113.71517 * 265.43916 * 17 12 9 37 37 H 1.08001 * 120.00142 * 180.27361 * 18 5 4 38 38 H 1.08000 * 119.99761 * 179.97438 * 19 18 5 39 39 H 1.07995 * 120.00019 * 179.97438 * 20 19 18 40 40 H 1.08007 * 119.99667 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.9159 -2.0914 -1.2857 6 16 1.3094 -3.0212 0.0826 7 8 1.3927 -4.3891 -0.2932 8 8 0.0973 -2.3984 0.4852 9 7 2.3789 -2.8128 1.3296 10 6 2.4135 -1.9625 2.5379 11 6 3.9456 -2.1236 2.4879 12 6 3.6758 -3.3961 1.6829 13 6 4.6505 -3.8776 0.6092 14 6 5.1555 -4.8952 1.6486 15 6 5.4342 -6.2810 1.0629 16 9 5.9637 -7.1099 2.0578 17 6 3.7786 -4.7792 2.3278 18 6 2.3715 -2.7431 -2.4168 19 6 2.8472 -2.0137 -3.4900 20 6 2.8681 -0.6325 -3.4324 21 6 2.4126 0.0189 -2.3018 22 1 -0.3933 0.4418 -0.7651 23 1 1.7923 -0.5139 0.8900 24 1 1.6610 2.4327 1.2636 25 1 3.5273 1.7728 -0.1508 26 1 1.9523 -2.4231 3.4116 27 1 2.0740 -0.9409 2.3673 28 1 4.4006 -2.3071 3.4612 29 1 4.4517 -1.3429 1.9201 30 1 5.3951 -3.1328 0.3283 31 1 4.1625 -4.3362 -0.2509 32 1 5.9766 -4.5221 2.2607 33 1 6.1492 -6.1927 0.2449 34 1 4.5051 -6.7108 0.6885 35 1 3.0444 -5.4924 1.9532 36 1 3.8286 -4.7527 3.4164 37 1 2.3553 -3.8221 -2.4618 38 1 3.2035 -2.5228 -4.3734 39 1 3.2403 -0.0626 -4.2709 40 1 2.4293 1.0979 -2.2566 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17321338_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:47:52 Heat of formation + Delta-G solvation = -48.287146 kcal Electronic energy + Delta-G solvation = -27821.775635 eV Core-core repulsion = 23840.279255 eV Total energy + Delta-G solvation = -3981.496380 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.58600 -41.71631 -40.69600 -38.60521 -37.46134 -37.05614 -36.98470 -32.84520 -32.41797 -29.80774 -29.16333 -27.07468 -26.98176 -24.64253 -24.43844 -22.82630 -22.37305 -20.98513 -19.80198 -18.85902 -18.08967 -17.99597 -17.47674 -17.23037 -17.10216 -16.77724 -16.61629 -16.15776 -15.95830 -15.87392 -15.51584 -15.26249 -15.00164 -14.92458 -14.46623 -14.24785 -13.95752 -13.66944 -13.52856 -13.41831 -13.28982 -13.20375 -13.05322 -12.84840 -12.55795 -12.36978 -12.24745 -12.16303 -12.05129 -11.66946 -11.60083 -11.50574 -11.15743 -10.49799 -10.45498 -10.17958 -10.07714 -5.07408 -0.85686 -0.31125 0.10388 1.17447 1.60672 1.72882 1.90037 2.37888 2.59525 2.98409 3.19689 3.30049 3.31330 3.34178 3.46641 3.51600 3.56599 3.76427 3.80860 3.95552 4.05057 4.12350 4.16389 4.19177 4.26444 4.32474 4.43129 4.49666 4.55118 4.60692 4.62966 4.66216 4.77836 4.81122 4.86912 4.88709 4.96565 5.00783 5.11555 5.14052 5.26235 5.31427 5.53491 5.73194 6.75837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.134 4.134 3 Si 0.788 3.212 4 C -0.027 4.027 5 C -0.663 4.663 6 S 2.692 3.308 7 O -0.995 6.995 8 O -0.958 6.958 9 N -1.032 6.032 10 C 0.112 3.888 11 C -0.108 4.108 12 C 0.155 3.845 13 C -0.139 4.139 14 C -0.126 4.126 15 C 0.063 3.937 16 F -0.234 7.234 17 C -0.140 4.140 18 C -0.041 4.041 19 C -0.135 4.135 20 C -0.052 4.052 21 C -0.137 4.137 22 H 0.387 0.613 23 H 0.106 0.894 24 H -0.288 1.288 25 H -0.263 1.263 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.849 7.061 -3.875 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.242 4.242 3 Si 0.689 3.311 4 C -0.029 4.029 5 C -0.753 4.753 6 S 2.790 3.210 7 O -0.985 6.985 8 O -0.948 6.948 9 N -0.871 5.871 10 C -0.011 4.011 11 C -0.148 4.148 12 C 0.068 3.932 13 C -0.177 4.177 14 C -0.146 4.146 15 C 0.008 3.992 16 F -0.215 7.215 17 C -0.179 4.179 18 C -0.060 4.060 19 C -0.154 4.154 20 C -0.070 4.070 21 C -0.154 4.154 22 H 0.236 0.764 23 H 0.123 0.877 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.176 0.824 39 H 0.189 0.811 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.476 6.755 -3.057 9.218 hybrid contribution -0.085 -0.934 -0.245 0.969 sum 5.391 5.822 -3.302 8.594 Atomic orbital electron populations 1.86830 1.15315 1.81846 1.49235 1.26167 0.87391 1.13817 0.96836 0.93408 0.78907 0.73760 0.85029 1.20171 0.94044 0.91759 0.96952 1.30518 1.19695 1.06868 1.18233 1.01508 0.72953 0.73020 0.73552 1.93504 1.86894 1.34043 1.84091 1.93665 1.41917 1.77300 1.81923 1.60189 1.35909 1.55484 1.35536 1.23131 0.97502 0.94776 0.85739 1.23365 0.94755 0.94887 1.01776 1.22427 0.80220 0.94476 0.96084 1.23227 0.98593 0.98975 0.96913 1.22959 0.98304 0.94599 0.98694 1.22196 1.00105 0.88260 0.88620 1.92742 1.88746 1.74668 1.65389 1.23354 0.96843 0.95581 1.02126 1.21168 0.92236 1.00801 0.91807 1.21712 0.99660 0.95067 0.98971 1.21942 0.92633 0.94588 0.97806 1.21492 0.99757 1.01049 0.93151 0.76439 0.87654 1.21457 1.18878 0.88347 0.89550 0.86852 0.87225 0.87707 0.89826 0.85765 0.88601 0.90750 0.90491 0.88649 0.84495 0.82379 0.81136 0.81658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -2.64 10.62 -127.34 -1.35 -3.99 16 2 C -0.13 -0.18 1.81 71.23 0.13 -0.05 16 3 Si 0.79 -3.46 29.96 68.60 2.06 -1.41 16 4 C -0.03 -0.03 5.23 -19.87 -0.10 -0.13 16 5 C -0.66 -3.25 5.92 22.27 0.13 -3.12 16 6 S 2.69 26.78 5.48 -56.49 -0.31 26.47 16 7 O -0.99 -14.73 16.97 -128.00 -2.17 -16.90 16 8 O -0.96 -15.41 14.68 -119.12 -1.75 -17.16 16 9 N -1.03 -3.49 3.73 -484.35 -1.81 -5.30 16 10 C 0.11 -0.16 8.19 86.40 0.71 0.55 16 11 C -0.11 0.68 8.05 30.98 0.25 0.93 16 12 C 0.16 -0.19 1.69 3.38 0.01 -0.19 16 13 C -0.14 0.39 7.54 30.86 0.23 0.63 16 14 C -0.13 0.36 4.09 -10.14 -0.04 0.32 16 15 C 0.06 -0.03 7.37 71.98 0.53 0.50 16 16 F -0.23 -1.38 17.36 44.97 0.78 -0.60 16 17 C -0.14 0.02 7.54 30.91 0.23 0.25 16 18 C -0.04 -0.10 9.55 22.27 0.21 0.12 16 19 C -0.14 0.46 10.05 22.27 0.22 0.68 16 20 C -0.05 0.33 10.05 22.27 0.22 0.55 16 21 C -0.14 0.65 8.66 22.27 0.19 0.84 16 22 H 0.39 -1.49 8.70 -74.05 -0.64 -2.13 16 23 H 0.11 0.24 3.10 -2.39 -0.01 0.23 16 24 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 25 H -0.26 0.65 7.11 99.48 0.71 1.36 16 26 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.09 -0.18 5.78 -2.39 -0.01 -0.19 16 28 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 29 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.08 -0.02 8.10 -2.38 -0.02 -0.04 16 32 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.07 0.03 7.88 -2.39 -0.02 0.01 16 35 H 0.08 0.33 7.92 -2.39 -0.02 0.31 16 36 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.14 0.34 7.33 -2.91 -0.02 0.32 16 38 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 39 H 0.17 -2.24 8.06 -2.91 -0.02 -2.26 16 40 H 0.17 -1.87 5.20 -2.91 -0.02 -1.89 16 Total: 0.00 -26.02 335.84 -1.15 -27.17 By element: Atomic # 1 Polarization: -10.65 SS G_CDS: 0.47 Total: -10.17 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 2.93 Total: 1.89 kcal Atomic # 7 Polarization: -3.49 SS G_CDS: -1.81 Total: -5.30 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -5.27 Total: -38.05 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.78 Total: -0.60 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.06 Total: -1.41 kcal Atomic # 16 Polarization: 26.78 SS G_CDS: -0.31 Total: 26.47 kcal Total: -26.02 -1.15 -27.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.115 kcal (2) G-P(sol) polarization free energy of solvation -26.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds