Wall clock time and date at job start Sat Mar 6 2021 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47113 * 2 1 4 4 C 1.50709 * 109.46838 * 119.99869 * 2 1 3 5 5 C 1.38232 * 119.99886 * 64.99667 * 4 2 1 6 6 C 1.38241 * 119.99782 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99912 * 0.02562 * 6 5 4 8 8 S 1.76197 * 120.00003 * 179.97438 * 7 6 5 9 9 O 1.42105 * 106.40051 * 336.46203 * 8 7 6 10 10 O 1.42093 * 106.40286 * 203.54030 * 8 7 6 11 11 N 1.65597 * 107.21776 * 89.99642 * 8 7 6 12 12 C 1.46499 * 119.99975 * 65.00109 * 11 8 7 13 13 C 1.52997 * 109.47695 * 214.99903 * 12 11 8 14 14 C 1.52997 * 109.47457 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46817 * 60.00169 * 14 13 12 16 16 C 1.52996 * 109.47346 * 299.99737 * 15 14 13 17 17 C 1.53002 * 109.46891 * 59.99997 * 16 15 14 18 18 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 19 19 C 1.53006 * 109.47164 * 299.99874 * 18 17 16 20 20 O 1.42895 * 109.47000 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47127 * 59.99836 * 19 18 17 22 22 C 1.52999 * 109.46623 * 299.99900 * 19 18 17 23 23 C 1.38233 * 120.00031 * 0.24905 * 7 6 5 24 24 C 1.38237 * 120.00011 * 359.49653 * 23 7 6 25 25 H 0.96696 * 114.00234 * 300.00630 * 1 2 3 26 26 H 1.08999 * 109.47372 * 239.99614 * 2 1 3 27 27 H 1.48499 * 109.99988 * 299.99493 * 3 2 1 28 28 H 1.48494 * 109.99983 * 61.31755 * 3 2 1 29 29 H 1.07996 * 120.00029 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.99972 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00033 * 245.00196 * 11 8 7 32 32 H 1.09004 * 109.47041 * 335.00025 * 12 11 8 33 33 H 1.09001 * 109.46989 * 59.99548 * 13 12 11 34 34 H 1.08993 * 109.47194 * 299.99651 * 14 13 12 35 35 H 1.09002 * 109.46695 * 179.97438 * 14 13 12 36 36 H 1.09004 * 109.46733 * 179.97438 * 15 14 13 37 37 H 1.08992 * 109.47554 * 180.02562 * 16 15 14 38 38 H 1.09004 * 109.47108 * 300.00289 * 16 15 14 39 39 H 1.09002 * 109.47097 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 41 41 H 1.09001 * 109.47375 * 59.99908 * 18 17 16 42 42 H 0.96696 * 114.00485 * 299.99339 * 20 19 18 43 43 H 1.09002 * 109.47153 * 180.02562 * 21 19 18 44 44 H 1.09001 * 109.46832 * 60.00321 * 21 19 18 45 45 H 1.09000 * 109.47486 * 299.99829 * 22 19 18 46 46 H 1.09002 * 109.46716 * 179.97438 * 22 19 18 47 47 H 1.07997 * 120.00057 * 179.72517 * 23 7 6 48 48 H 1.07999 * 120.00259 * 180.22872 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.6845 -2.0601 1.3985 6 6 2.1448 -2.7117 2.5275 7 6 2.8514 -2.0133 3.4888 8 16 3.4375 -2.8435 4.9282 9 8 2.6080 -3.9846 5.0989 10 8 3.6030 -1.8465 5.9270 11 7 4.9527 -3.4147 4.5817 12 6 6.0461 -2.4765 4.3161 13 6 6.9785 -3.0666 3.2562 14 6 8.1200 -2.0865 2.9784 15 6 8.9054 -1.8397 4.2681 16 6 7.9732 -1.2496 5.3280 17 6 6.8316 -2.2296 5.6058 18 6 7.4077 -3.5530 6.1132 19 6 8.3401 -4.1432 5.0533 20 8 8.8777 -5.3795 5.5270 21 6 9.4816 -3.1631 4.7755 22 6 7.5546 -4.3900 3.7637 23 6 3.0932 -0.6623 3.3235 24 6 2.6374 -0.0119 2.1921 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 1.5616 2.4679 -1.2085 28 1 1.5878 2.4585 1.2242 29 1 1.1322 -2.6056 0.6477 30 1 1.9517 -3.7661 2.6590 31 1 5.1163 -4.3703 4.5547 32 1 5.6360 -1.5334 3.9548 33 1 6.4190 -3.2421 2.3374 34 1 7.7095 -1.1438 2.6169 35 1 8.7844 -2.5072 2.2236 36 1 9.7190 -1.1418 4.0700 37 1 8.5328 -1.0733 6.2466 38 1 7.5627 -0.3067 4.9665 39 1 6.1672 -1.8090 6.3606 40 1 6.5944 -4.2511 6.3115 41 1 7.9673 -3.3772 7.0320 42 1 9.3891 -5.2988 6.3437 43 1 10.1456 -3.5834 4.0200 44 1 10.0412 -2.9873 5.6942 45 1 6.7413 -5.0883 3.9616 46 1 8.2189 -4.8101 3.0085 47 1 3.6413 -0.1157 4.0766 48 1 2.8295 1.0427 2.0611 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17849790_13421422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:07 Heat of formation + Delta-G solvation = -137.295829 kcal Electronic energy + Delta-G solvation = -33256.028040 eV Core-core repulsion = 28982.142359 eV Total energy + Delta-G solvation = -4273.885681 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.138 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.61546 -40.70798 -38.46013 -37.86940 -37.59007 -37.05044 -35.87984 -33.64227 -33.05943 -32.22226 -32.08691 -31.15636 -27.25385 -26.87816 -26.39077 -24.11267 -23.02979 -22.71524 -22.41353 -22.20146 -20.55687 -19.22130 -19.06514 -18.52586 -18.22544 -17.94060 -17.22477 -16.76320 -16.48969 -16.21655 -15.89763 -15.81985 -15.58573 -15.41492 -15.32451 -14.91081 -14.82500 -14.73048 -14.50516 -14.34096 -14.01301 -13.84647 -13.76010 -13.47922 -13.34839 -13.31140 -13.28476 -13.20385 -12.77998 -12.68434 -12.57056 -12.31041 -11.93794 -11.91633 -11.81016 -11.79730 -11.74405 -11.43970 -11.17870 -10.85348 -10.73567 -10.46094 -10.38791 -10.21186 -10.15059 -4.96599 -0.76990 -0.39605 0.18036 1.22817 1.56996 1.86809 1.93872 2.31266 2.67042 3.14551 3.20887 3.30700 3.48589 3.50677 3.54439 3.75316 3.81292 3.83435 3.94550 4.06121 4.12817 4.18081 4.18880 4.22535 4.27187 4.32670 4.34917 4.36470 4.43622 4.45574 4.60943 4.66126 4.77791 4.80899 4.83294 4.89425 4.93492 4.97670 5.04748 5.07396 5.12891 5.14606 5.17301 5.18588 5.23969 5.27472 5.40635 5.48915 5.55546 5.58343 5.68886 5.95767 6.37976 6.86978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.092 4.092 3 Si 0.773 3.227 4 C -0.060 4.060 5 C -0.120 4.120 6 C -0.028 4.028 7 C -0.676 4.676 8 S 2.704 3.296 9 O -0.993 6.993 10 O -0.977 6.977 11 N -1.101 6.101 12 C 0.159 3.841 13 C -0.081 4.081 14 C -0.110 4.110 15 C -0.084 4.084 16 C -0.109 4.109 17 C -0.103 4.103 18 C -0.137 4.137 19 C 0.132 3.868 20 O -0.581 6.581 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.022 4.022 24 C -0.138 4.138 25 H 0.387 0.613 26 H 0.135 0.865 27 H -0.303 1.303 28 H -0.279 1.279 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.423 0.577 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.387 0.613 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.160 0.840 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 3.846 -3.535 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.201 4.201 3 Si 0.678 3.322 4 C -0.061 4.061 5 C -0.139 4.139 6 C -0.047 4.047 7 C -0.764 4.764 8 S 2.796 3.204 9 O -0.984 6.984 10 O -0.967 6.967 11 N -0.863 5.863 12 C 0.052 3.948 13 C -0.101 4.101 14 C -0.148 4.148 15 C -0.103 4.103 16 C -0.147 4.147 17 C -0.124 4.124 18 C -0.175 4.175 19 C 0.092 3.908 20 O -0.389 6.389 21 C -0.173 4.173 22 C -0.141 4.141 23 C -0.041 4.041 24 C -0.156 4.156 25 H 0.237 0.763 26 H 0.152 0.848 27 H -0.231 1.231 28 H -0.206 1.206 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.261 0.739 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.178 0.822 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.203 4.205 -3.795 7.692 hybrid contribution -1.002 -0.522 0.579 1.270 sum 4.201 3.683 -3.216 6.447 Atomic orbital electron populations 1.86606 1.18145 1.80398 1.50217 1.25438 0.83710 1.12373 0.98572 0.94034 0.89994 0.71523 0.76614 1.20769 0.94768 0.94635 0.95895 1.21331 0.99930 0.94474 0.98152 1.21123 0.91565 1.00517 0.91475 1.30787 1.16781 1.06871 1.21985 1.01321 0.72365 0.72718 0.73949 1.93566 1.67229 1.51369 1.86189 1.93570 1.85921 1.61404 1.55762 1.55468 1.24363 1.17554 1.88888 1.21007 0.86672 0.91927 0.95174 1.21325 0.96268 0.94474 0.98068 1.21624 0.96305 0.99758 0.97113 1.21080 0.98051 0.95981 0.95153 1.21593 0.95564 0.98139 0.99401 1.21569 0.97612 0.95726 0.97452 1.22163 0.99510 0.97241 0.98628 1.21165 0.92607 0.83339 0.93692 1.86516 1.73060 1.32585 1.46751 1.22178 0.97331 0.95909 1.01907 1.21464 0.99287 0.97673 0.95700 1.21169 0.94435 0.91658 0.96872 1.21432 0.99195 1.01145 0.93865 0.76310 0.84775 1.23111 1.20573 0.83962 0.83702 0.73881 0.87616 0.88414 0.89394 0.90768 0.89588 0.91325 0.89884 0.90442 0.92153 0.91234 0.76337 0.91624 0.91400 0.91746 0.91183 0.82241 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.00 12.83 -148.98 -1.91 -1.91 16 2 C -0.09 0.38 2.80 71.24 0.20 0.58 16 3 Si 0.77 -4.20 29.89 68.60 2.05 -2.15 16 4 C -0.06 0.19 5.35 -19.86 -0.11 0.08 16 5 C -0.12 0.16 9.69 22.27 0.22 0.37 16 6 C -0.03 0.00 9.52 22.27 0.21 0.21 16 7 C -0.68 0.00 5.82 22.27 0.13 0.13 16 8 S 2.70 7.77 5.65 -56.49 -0.32 7.45 16 9 O -0.99 -9.88 17.28 -128.00 -2.21 -12.09 16 10 O -0.98 -7.29 16.54 -128.00 -2.12 -9.40 16 11 N -1.10 2.82 4.74 -169.39 -0.80 2.02 16 12 C 0.16 -0.78 2.25 44.99 0.10 -0.68 16 13 C -0.08 0.52 2.90 -10.79 -0.03 0.49 16 14 C -0.11 0.89 5.19 30.59 0.16 1.05 16 15 C -0.08 0.56 3.19 -10.79 -0.03 0.53 16 16 C -0.11 0.65 5.19 30.59 0.16 0.81 16 17 C -0.10 0.30 2.91 -10.79 -0.03 0.27 16 18 C -0.14 0.20 4.66 30.60 0.14 0.34 16 19 C 0.13 -0.23 1.15 -10.79 -0.01 -0.24 16 20 O -0.58 -0.77 12.98 -148.98 -1.93 -2.70 16 21 C -0.14 0.55 4.82 30.59 0.15 0.70 16 22 C -0.10 0.26 4.66 30.60 0.14 0.41 16 23 C -0.02 0.06 8.92 22.27 0.20 0.26 16 24 C -0.14 0.63 8.67 22.27 0.19 0.82 16 25 H 0.39 -2.01 8.70 -74.06 -0.64 -2.66 16 26 H 0.13 -0.84 7.96 -2.39 -0.02 -0.86 16 27 H -0.30 -0.90 7.11 99.48 0.71 -0.20 16 28 H -0.28 0.50 7.01 99.48 0.70 1.19 16 29 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 30 H 0.15 -0.16 7.62 -2.91 -0.02 -0.18 16 31 H 0.42 -1.58 6.82 -96.75 -0.66 -2.24 16 32 H 0.11 -0.88 7.25 -2.38 -0.02 -0.90 16 33 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.08 -0.68 8.14 -2.38 -0.02 -0.70 16 39 H 0.08 0.02 7.64 -2.39 -0.02 0.00 16 40 H 0.06 0.05 7.45 -2.39 -0.02 0.03 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.39 -1.91 9.05 -74.06 -0.67 -2.58 16 43 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.06 -0.11 6.51 -2.39 -0.02 -0.13 16 46 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.16 -1.00 7.61 -2.91 -0.02 -1.02 16 48 H 0.16 -1.42 4.85 -2.91 -0.01 -1.43 16 Total: 0.00 -22.64 372.62 -6.40 -29.04 By element: Atomic # 1 Polarization: -15.45 SS G_CDS: -0.93 Total: -16.39 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 1.78 Total: 6.13 kcal Atomic # 7 Polarization: 2.82 SS G_CDS: -0.80 Total: 2.02 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -8.17 Total: -26.11 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.05 Total: -2.15 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -0.32 Total: 7.45 kcal Total: -22.64 -6.40 -29.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_13421422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.258 kcal (2) G-P(sol) polarization free energy of solvation -22.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds