Wall clock time and date at job start Sat Mar 6 2021 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86288 * 109.47244 * 2 1 4 4 C 1.50705 * 109.46782 * 239.99605 * 2 1 3 5 5 C 1.33385 * 122.54262 * 284.99958 * 4 2 1 6 6 S 1.76197 * 125.20400 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40051 * 66.18073 * 6 5 4 8 8 O 1.42093 * 106.40286 * 293.25900 * 6 5 4 9 9 N 1.65597 * 107.21776 * 179.71511 * 6 5 4 10 10 C 1.46499 * 119.99975 * 65.00109 * 9 6 5 11 11 C 1.52997 * 109.47695 * 214.99903 * 10 9 6 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46817 * 60.00169 * 12 11 10 14 14 C 1.52996 * 109.47346 * 299.99737 * 13 12 11 15 15 C 1.53002 * 109.46891 * 59.99997 * 14 13 12 16 16 C 1.52997 * 109.46978 * 60.00410 * 15 14 13 17 17 C 1.53006 * 109.47164 * 299.99874 * 16 15 14 18 18 O 1.42895 * 109.47000 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47127 * 59.99836 * 17 16 15 20 20 C 1.52999 * 109.46623 * 299.99900 * 17 16 15 21 21 S 1.75883 * 109.59000 * 179.75313 * 5 4 2 22 22 C 1.75883 * 90.97489 * 0.23006 * 21 5 4 23 23 C 1.33388 * 109.59172 * 0.02562 * 22 21 5 24 24 H 0.96702 * 114.00034 * 60.00333 * 1 2 3 25 25 H 1.09002 * 109.46814 * 120.00516 * 2 1 3 26 26 H 1.48504 * 110.00284 * 298.68311 * 3 2 1 27 27 H 1.48500 * 110.00353 * 59.99989 * 3 2 1 28 28 H 0.96996 * 120.00033 * 245.00196 * 9 6 5 29 29 H 1.09004 * 109.47041 * 335.00025 * 10 9 6 30 30 H 1.09001 * 109.46989 * 59.99548 * 11 10 9 31 31 H 1.08993 * 109.47194 * 299.99651 * 12 11 10 32 32 H 1.09002 * 109.46695 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.46733 * 179.97438 * 13 12 11 34 34 H 1.08992 * 109.47554 * 180.02562 * 14 13 12 35 35 H 1.09004 * 109.47108 * 300.00289 * 14 13 12 36 36 H 1.09002 * 109.47097 * 180.02562 * 15 14 13 37 37 H 1.09001 * 109.47375 * 59.99908 * 16 15 14 38 38 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 39 39 H 0.96696 * 114.00485 * 299.99339 * 18 17 16 40 40 H 1.09002 * 109.47153 * 180.02562 * 19 17 16 41 41 H 1.09001 * 109.46832 * 60.00321 * 19 17 16 42 42 H 1.09000 * 109.47486 * 299.99829 * 20 17 16 43 43 H 1.09002 * 109.46716 * 179.97438 * 20 17 16 44 44 H 1.07994 * 125.20675 * 179.97438 * 22 21 5 45 45 H 1.08001 * 122.54161 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.8960 -2.0379 -1.3572 6 16 1.2752 -3.1577 -0.1468 7 8 -0.1208 -2.9102 -0.0499 8 8 2.1576 -3.0776 0.9640 9 7 1.4374 -4.6858 -0.7638 10 6 2.7714 -5.2354 -1.0178 11 6 2.7290 -6.1220 -2.2640 12 6 4.1224 -6.6955 -2.5296 13 6 4.5690 -7.5282 -1.3262 14 6 4.6115 -6.6416 -0.0800 15 6 3.2181 -6.0681 0.1856 16 6 2.2290 -7.2139 0.4083 17 6 2.1866 -8.1006 -0.8379 18 8 1.2623 -9.1704 -0.6300 19 6 3.5799 -8.6740 -1.1035 20 6 1.7398 -7.2678 -2.0412 21 16 2.5570 -2.4988 -2.9206 22 6 2.8592 -0.8136 -3.3233 23 6 2.4679 -0.0352 -2.3132 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8900 26 1 1.5879 2.4585 -1.2242 27 1 1.5616 2.4678 1.2085 28 1 0.6491 -5.2170 -0.9570 29 1 3.4764 -4.4193 -1.1763 30 1 2.4112 -5.5287 -3.1213 31 1 4.8270 -5.8792 -2.6883 32 1 4.0920 -7.3275 -3.4171 33 1 5.5615 -7.9371 -1.5156 34 1 4.9301 -7.2346 0.7772 35 1 5.3162 -5.8253 -0.2387 36 1 3.2484 -5.4361 1.0731 37 1 2.5472 -7.8071 1.2656 38 1 1.2364 -6.8053 0.5980 39 1 1.4831 -9.7411 0.1187 40 1 3.5498 -9.3053 -1.9916 41 1 3.8981 -9.2672 -0.2462 42 1 0.7472 -6.8593 -1.8520 43 1 1.7100 -7.8994 -2.9291 44 1 3.2956 -0.4627 -4.2467 45 1 2.5582 1.0407 -2.3401 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17849790_13652106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:15 Heat of formation + Delta-G solvation = -120.160153 kcal Electronic energy + Delta-G solvation = -32286.715694 eV Core-core repulsion = 28102.725318 eV Total energy + Delta-G solvation = -4183.990376 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.094 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.78421 -40.11932 -38.12229 -37.65558 -37.20094 -36.75650 -36.04358 -33.82173 -32.23301 -31.54834 -31.27104 -28.06519 -27.05286 -26.55506 -24.41939 -22.89907 -22.57275 -22.43984 -21.56133 -19.89589 -19.66960 -19.10763 -18.51603 -18.15871 -17.82331 -17.11522 -16.77011 -16.19953 -16.12829 -15.94430 -15.85128 -15.56317 -15.47729 -15.34157 -15.06251 -14.88602 -14.52539 -14.27097 -14.09262 -13.95809 -13.62658 -13.61333 -13.43007 -13.37738 -13.00901 -12.91365 -12.82089 -12.66380 -12.60803 -12.40914 -12.25750 -12.08884 -12.00964 -11.95459 -11.64963 -11.59340 -11.38944 -11.01364 -10.74718 -10.55676 -10.47364 -10.36269 -9.73674 -5.05187 -0.71363 -0.65782 0.16401 0.53221 1.12122 1.16614 1.48813 1.87575 1.92154 2.65081 2.99962 3.23687 3.32422 3.35094 3.40173 3.62462 3.68492 3.77261 3.88009 3.91169 3.95889 3.98713 4.00769 4.06383 4.13392 4.14038 4.20601 4.26388 4.30632 4.45633 4.58399 4.58642 4.65973 4.73952 4.77211 4.84999 4.91102 4.94015 4.94617 4.96685 4.98208 5.04949 5.08871 5.20317 5.29148 5.37515 5.41603 5.82044 6.32271 6.69765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.007 3.993 5 C -0.766 4.766 6 S 2.713 3.287 7 O -0.931 6.931 8 O -0.943 6.943 9 N -1.113 6.113 10 C 0.159 3.841 11 C -0.089 4.089 12 C -0.111 4.111 13 C -0.086 4.086 14 C -0.111 4.111 15 C -0.101 4.101 16 C -0.137 4.137 17 C 0.134 3.866 18 O -0.561 6.561 19 C -0.137 4.137 20 C -0.099 4.099 21 S 0.206 5.794 22 C -0.163 4.163 23 C -0.163 4.163 24 H 0.379 0.621 25 H 0.127 0.873 26 H -0.253 1.253 27 H -0.248 1.248 28 H 0.422 0.578 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.377 0.623 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.179 0.821 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -0.464 -4.442 7.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.609 3.391 4 C -0.010 4.010 5 C -0.966 4.966 6 S 2.797 3.203 7 O -0.921 6.921 8 O -0.933 6.933 9 N -0.875 5.875 10 C 0.051 3.949 11 C -0.109 4.109 12 C -0.149 4.149 13 C -0.105 4.105 14 C -0.149 4.149 15 C -0.121 4.121 16 C -0.175 4.175 17 C 0.094 3.906 18 O -0.366 6.366 19 C -0.175 4.175 20 C -0.137 4.137 21 S 0.472 5.528 22 C -0.301 4.301 23 C -0.193 4.193 24 H 0.226 0.774 25 H 0.145 0.855 26 H -0.178 1.178 27 H -0.172 1.172 28 H 0.259 0.741 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.225 0.775 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.196 0.804 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.785 -0.696 -4.379 7.289 hybrid contribution -0.996 0.847 -0.211 1.325 sum 4.788 0.151 -4.590 6.635 Atomic orbital electron populations 1.86792 1.15615 1.79980 1.49019 1.25353 0.85573 1.13488 0.97282 0.94626 0.91053 0.72510 0.80900 1.18973 0.94095 0.91322 0.96641 1.35771 1.26019 1.14451 1.20313 1.01694 0.73876 0.71696 0.73041 1.93669 1.29604 1.83711 1.85088 1.93619 1.67599 1.85875 1.46192 1.55786 1.14472 1.32833 1.84411 1.20916 0.81992 0.96531 0.95415 1.21368 0.96468 0.96007 0.97020 1.21600 0.95242 0.99805 0.98242 1.21077 0.99050 0.95295 0.95061 1.21592 0.95915 0.99421 0.97969 1.21548 0.95082 0.96809 0.98643 1.22177 1.00322 0.97146 0.97868 1.21084 0.88219 0.86665 0.94643 1.86549 1.52244 1.43111 1.54740 1.22205 0.94850 0.97887 1.02576 1.21406 0.98714 0.95971 0.97600 1.84073 1.56321 1.06038 1.06383 1.26147 1.03649 0.96845 1.03425 1.20334 1.03510 1.02092 0.93357 0.77358 0.85519 1.17773 1.17201 0.74101 0.89321 0.89566 0.91004 0.90822 0.90318 0.91027 0.91095 0.88936 0.91215 0.90897 0.77540 0.90993 0.91507 0.91125 0.90496 0.80387 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.64 12.27 -36.45 -0.45 -2.09 16 2 C -0.11 -0.17 2.33 36.01 0.08 -0.09 16 3 Si 0.71 -0.58 30.45 -169.99 -5.18 -5.76 16 4 C 0.01 0.01 5.14 -106.24 -0.55 -0.54 16 5 C -0.77 -1.08 6.33 29.04 0.18 -0.89 16 6 S 2.71 7.94 4.98 -107.50 -0.54 7.40 16 7 O -0.93 -5.78 17.41 -59.76 -1.04 -6.82 16 8 O -0.94 -4.64 16.78 -57.17 -0.96 -5.60 16 9 N -1.11 0.17 4.56 -4.89 -0.02 0.15 16 10 C 0.16 -0.19 1.66 -67.93 -0.11 -0.30 16 11 C -0.09 0.20 2.90 -90.62 -0.26 -0.06 16 12 C -0.11 0.31 5.19 -26.73 -0.14 0.18 16 13 C -0.09 0.20 3.19 -90.62 -0.29 -0.09 16 14 C -0.11 0.21 5.19 -26.73 -0.14 0.07 16 15 C -0.10 0.06 2.91 -90.62 -0.26 -0.20 16 16 C -0.14 0.08 4.66 -26.73 -0.12 -0.04 16 17 C 0.13 -0.10 1.15 -90.62 -0.10 -0.20 16 18 O -0.56 -0.27 12.98 -35.23 -0.46 -0.72 16 19 C -0.14 0.23 4.82 -26.73 -0.13 0.10 16 20 C -0.10 0.10 4.66 -26.73 -0.12 -0.02 16 21 S 0.21 -0.30 21.57 -107.50 -2.32 -2.62 16 22 C -0.16 0.34 11.23 29.04 0.33 0.67 16 23 C -0.16 0.17 8.74 -41.20 -0.36 -0.19 16 24 H 0.38 -0.15 8.70 45.56 0.40 0.24 16 25 H 0.13 0.26 7.26 -51.93 -0.38 -0.12 16 26 H -0.25 0.04 6.81 56.52 0.38 0.43 16 27 H -0.25 -0.55 7.11 56.52 0.40 -0.14 16 28 H 0.42 -0.52 6.82 -34.47 -0.24 -0.76 16 29 H 0.09 -0.16 6.89 -51.93 -0.36 -0.52 16 30 H 0.09 -0.27 8.14 -51.93 -0.42 -0.70 16 31 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 32 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 33 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 36 H 0.09 0.07 7.64 -51.93 -0.40 -0.32 16 37 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.07 0.02 7.45 -51.93 -0.39 -0.37 16 39 H 0.38 -1.02 9.05 45.56 0.41 -0.61 16 40 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 41 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 42 H 0.07 -0.06 6.51 -51.93 -0.34 -0.40 16 43 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 44 H 0.18 -0.87 8.06 -52.49 -0.42 -1.29 16 45 H 0.16 -0.45 5.53 -52.49 -0.29 -0.74 16 LS Contribution 360.33 15.07 5.43 5.43 Total: 0.00 -9.72 360.33 -12.97 -22.69 By element: Atomic # 1 Polarization: -5.01 SS G_CDS: -5.44 Total: -10.45 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.00 Total: -1.62 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -0.02 Total: 0.15 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -2.90 Total: -15.23 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.18 Total: -5.76 kcal Atomic # 16 Polarization: 7.64 SS G_CDS: -2.85 Total: 4.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -9.72 -12.97 -22.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_13652106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.471 kcal (2) G-P(sol) polarization free energy of solvation -9.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds