Wall clock time and date at job start Sat Mar 6 2021 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86288 * 109.47244 * 2 1 4 4 C 1.50705 * 109.46782 * 239.99605 * 2 1 3 5 5 C 1.33385 * 122.54262 * 284.99958 * 4 2 1 6 6 S 1.76197 * 125.20400 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40051 * 66.18073 * 6 5 4 8 8 O 1.42093 * 106.40286 * 293.25900 * 6 5 4 9 9 N 1.65597 * 107.21776 * 179.71511 * 6 5 4 10 10 C 1.46499 * 119.99975 * 65.00109 * 9 6 5 11 11 C 1.52997 * 109.47695 * 214.99903 * 10 9 6 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46817 * 60.00169 * 12 11 10 14 14 C 1.52996 * 109.47346 * 299.99737 * 13 12 11 15 15 C 1.53002 * 109.46891 * 59.99997 * 14 13 12 16 16 C 1.52997 * 109.46978 * 60.00410 * 15 14 13 17 17 C 1.53006 * 109.47164 * 299.99874 * 16 15 14 18 18 O 1.42895 * 109.47000 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47127 * 59.99836 * 17 16 15 20 20 C 1.52999 * 109.46623 * 299.99900 * 17 16 15 21 21 S 1.75883 * 109.59000 * 179.75313 * 5 4 2 22 22 C 1.75883 * 90.97489 * 0.23006 * 21 5 4 23 23 C 1.33388 * 109.59172 * 0.02562 * 22 21 5 24 24 H 0.96702 * 114.00034 * 60.00333 * 1 2 3 25 25 H 1.09002 * 109.46814 * 120.00516 * 2 1 3 26 26 H 1.48504 * 110.00284 * 298.68311 * 3 2 1 27 27 H 1.48500 * 110.00353 * 59.99989 * 3 2 1 28 28 H 0.96996 * 120.00033 * 245.00196 * 9 6 5 29 29 H 1.09004 * 109.47041 * 335.00025 * 10 9 6 30 30 H 1.09001 * 109.46989 * 59.99548 * 11 10 9 31 31 H 1.08993 * 109.47194 * 299.99651 * 12 11 10 32 32 H 1.09002 * 109.46695 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.46733 * 179.97438 * 13 12 11 34 34 H 1.08992 * 109.47554 * 180.02562 * 14 13 12 35 35 H 1.09004 * 109.47108 * 300.00289 * 14 13 12 36 36 H 1.09002 * 109.47097 * 180.02562 * 15 14 13 37 37 H 1.09001 * 109.47375 * 59.99908 * 16 15 14 38 38 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 39 39 H 0.96696 * 114.00485 * 299.99339 * 18 17 16 40 40 H 1.09002 * 109.47153 * 180.02562 * 19 17 16 41 41 H 1.09001 * 109.46832 * 60.00321 * 19 17 16 42 42 H 1.09000 * 109.47486 * 299.99829 * 20 17 16 43 43 H 1.09002 * 109.46716 * 179.97438 * 20 17 16 44 44 H 1.07994 * 125.20675 * 179.97438 * 22 21 5 45 45 H 1.08001 * 122.54161 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.8960 -2.0379 -1.3572 6 16 1.2752 -3.1577 -0.1468 7 8 -0.1208 -2.9102 -0.0499 8 8 2.1576 -3.0776 0.9640 9 7 1.4374 -4.6858 -0.7638 10 6 2.7714 -5.2354 -1.0178 11 6 2.7290 -6.1220 -2.2640 12 6 4.1224 -6.6955 -2.5296 13 6 4.5690 -7.5282 -1.3262 14 6 4.6115 -6.6416 -0.0800 15 6 3.2181 -6.0681 0.1856 16 6 2.2290 -7.2139 0.4083 17 6 2.1866 -8.1006 -0.8379 18 8 1.2623 -9.1704 -0.6300 19 6 3.5799 -8.6740 -1.1035 20 6 1.7398 -7.2678 -2.0412 21 16 2.5570 -2.4988 -2.9206 22 6 2.8592 -0.8136 -3.3233 23 6 2.4679 -0.0352 -2.3132 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8900 26 1 1.5879 2.4585 -1.2242 27 1 1.5616 2.4678 1.2085 28 1 0.6491 -5.2170 -0.9570 29 1 3.4764 -4.4193 -1.1763 30 1 2.4112 -5.5287 -3.1213 31 1 4.8270 -5.8792 -2.6883 32 1 4.0920 -7.3275 -3.4171 33 1 5.5615 -7.9371 -1.5156 34 1 4.9301 -7.2346 0.7772 35 1 5.3162 -5.8253 -0.2387 36 1 3.2484 -5.4361 1.0731 37 1 2.5472 -7.8071 1.2656 38 1 1.2364 -6.8053 0.5980 39 1 1.4831 -9.7411 0.1187 40 1 3.5498 -9.3053 -1.9916 41 1 3.8981 -9.2672 -0.2462 42 1 0.7472 -6.8593 -1.8520 43 1 1.7100 -7.8994 -2.9291 44 1 3.2956 -0.4627 -4.2467 45 1 2.5582 1.0407 -2.3401 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17849790_13652106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:13 Heat of formation + Delta-G solvation = -124.744666 kcal Electronic energy + Delta-G solvation = -32286.914493 eV Core-core repulsion = 28102.725318 eV Total energy + Delta-G solvation = -4184.189176 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.094 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.68562 -40.10643 -38.41966 -37.65314 -37.29825 -37.07065 -35.99768 -33.71329 -32.16701 -31.49102 -31.20711 -28.12261 -26.93161 -26.47045 -24.36929 -22.79299 -22.49447 -22.36535 -21.57588 -19.96604 -19.70216 -19.10213 -18.59735 -18.14777 -17.85803 -17.16965 -16.82485 -16.28450 -16.23342 -15.91281 -15.85113 -15.51761 -15.37456 -15.31079 -14.95351 -14.79957 -14.42326 -14.22835 -14.04899 -13.91290 -13.64470 -13.55439 -13.42487 -13.35226 -13.32978 -13.23265 -12.83483 -12.80178 -12.54563 -12.40341 -12.31747 -11.99550 -11.87141 -11.85201 -11.62335 -11.50604 -11.24872 -10.95415 -10.81786 -10.46578 -10.41197 -10.31316 -9.62454 -4.99583 -0.84035 -0.67370 0.20893 0.65950 1.13199 1.25086 1.52295 1.82641 1.89808 2.47007 3.10879 3.18641 3.38083 3.43485 3.46488 3.53249 3.75247 3.87010 3.98615 4.00183 4.03774 4.10282 4.11981 4.19099 4.23099 4.27904 4.28756 4.30741 4.38525 4.60006 4.69879 4.72310 4.75422 4.83524 4.88693 4.97399 5.02055 5.06736 5.07431 5.08801 5.12366 5.14585 5.22066 5.35454 5.43822 5.49788 5.52600 5.82922 6.34164 6.84545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.136 4.136 3 Si 0.804 3.196 4 C 0.002 3.998 5 C -0.796 4.796 6 S 2.721 3.279 7 O -0.975 6.975 8 O -0.975 6.975 9 N -1.104 6.104 10 C 0.154 3.846 11 C -0.082 4.082 12 C -0.111 4.111 13 C -0.084 4.084 14 C -0.110 4.110 15 C -0.103 4.103 16 C -0.138 4.138 17 C 0.133 3.867 18 O -0.580 6.580 19 C -0.134 4.134 20 C -0.104 4.104 21 S 0.238 5.762 22 C -0.149 4.149 23 C -0.175 4.175 24 H 0.390 0.610 25 H 0.109 0.891 26 H -0.249 1.249 27 H -0.296 1.296 28 H 0.426 0.574 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.388 0.612 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.214 0.786 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 -0.031 -6.997 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.244 4.244 3 Si 0.703 3.297 4 C -0.017 4.017 5 C -0.999 4.999 6 S 2.809 3.191 7 O -0.965 6.965 8 O -0.965 6.965 9 N -0.868 5.868 10 C 0.048 3.952 11 C -0.103 4.103 12 C -0.149 4.149 13 C -0.102 4.102 14 C -0.148 4.148 15 C -0.123 4.123 16 C -0.175 4.175 17 C 0.093 3.907 18 O -0.388 6.388 19 C -0.172 4.172 20 C -0.142 4.142 21 S 0.505 5.495 22 C -0.287 4.287 23 C -0.204 4.204 24 H 0.240 0.760 25 H 0.127 0.873 26 H -0.174 1.174 27 H -0.224 1.224 28 H 0.264 0.736 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.230 0.770 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.664 -0.328 -6.926 10.335 hybrid contribution -1.601 0.651 0.601 1.830 sum 6.063 0.323 -6.325 8.768 Atomic orbital electron populations 1.86744 1.16938 1.80776 1.50031 1.25840 0.84968 1.16265 0.97320 0.93602 0.89394 0.68538 0.78129 1.19119 0.94170 0.91355 0.97009 1.35431 1.28218 1.14430 1.21841 1.00928 0.72676 0.72268 0.73237 1.93604 1.32105 1.84682 1.86126 1.93570 1.67830 1.86549 1.48521 1.55537 1.15337 1.31713 1.84184 1.21106 0.81338 0.96940 0.95842 1.21371 0.96874 0.95372 0.96633 1.21648 0.94761 1.00302 0.98179 1.21084 0.99327 0.94912 0.94906 1.21600 0.94930 0.99781 0.98446 1.21544 0.96101 0.96545 0.98158 1.22169 0.99626 0.97367 0.98385 1.21138 0.88728 0.86400 0.94415 1.86515 1.53082 1.43652 1.55515 1.22173 0.94281 0.98176 1.02582 1.21467 0.98852 0.96399 0.97439 1.83890 1.55096 1.06630 1.03915 1.26642 1.01824 0.96096 1.04091 1.20473 1.03905 1.03229 0.92820 0.76000 0.87299 1.17407 1.22363 0.73569 0.88414 0.88212 0.89541 0.90049 0.89239 0.91030 0.90298 0.90974 0.90980 0.92356 0.76269 0.91183 0.91229 0.91836 0.90530 0.76964 0.80595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -4.73 12.27 -147.82 -1.81 -6.55 16 2 C -0.14 -0.67 2.33 71.24 0.17 -0.50 16 3 Si 0.80 -1.27 30.45 68.60 2.09 0.81 16 4 C 0.00 0.00 5.14 -20.91 -0.11 -0.10 16 5 C -0.80 -2.84 6.33 66.72 0.42 -2.42 16 6 S 2.72 22.74 4.98 -56.49 -0.28 22.45 16 7 O -0.98 -15.38 17.41 -125.53 -2.19 -17.56 16 8 O -0.97 -12.66 16.78 -128.00 -2.15 -14.81 16 9 N -1.10 -1.53 4.56 -169.39 -0.77 -2.30 16 10 C 0.15 -0.28 1.66 44.99 0.07 -0.21 16 11 C -0.08 0.42 2.90 -10.79 -0.03 0.39 16 12 C -0.11 0.81 5.19 30.59 0.16 0.97 16 13 C -0.08 0.48 3.19 -10.79 -0.03 0.45 16 14 C -0.11 0.43 5.19 30.59 0.16 0.59 16 15 C -0.10 0.01 2.91 -10.79 -0.03 -0.02 16 16 C -0.14 -0.05 4.66 30.60 0.14 0.09 16 17 C 0.13 -0.12 1.15 -10.79 -0.01 -0.13 16 18 O -0.58 -1.08 12.98 -148.98 -1.93 -3.02 16 19 C -0.13 0.49 4.82 30.59 0.15 0.64 16 20 C -0.10 0.18 4.66 30.60 0.14 0.32 16 21 S 0.24 -1.01 21.57 -56.49 -1.22 -2.23 16 22 C -0.15 1.03 11.23 66.72 0.75 1.78 16 23 C -0.18 0.67 8.74 21.22 0.19 0.85 16 24 H 0.39 0.37 8.70 -74.06 -0.64 -0.27 16 25 H 0.11 0.81 7.26 -2.39 -0.02 0.79 16 26 H -0.25 0.55 6.81 99.48 0.68 1.23 16 27 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 28 H 0.43 -0.16 6.82 -96.75 -0.66 -0.82 16 29 H 0.10 -0.37 6.89 -2.38 -0.02 -0.38 16 30 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 36 H 0.07 0.29 7.64 -2.39 -0.02 0.27 16 37 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.06 0.17 7.45 -2.39 -0.02 0.15 16 39 H 0.39 -1.72 9.05 -74.06 -0.67 -2.39 16 40 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.07 -0.30 8.14 -2.39 -0.02 -0.31 16 42 H 0.06 -0.03 6.51 -2.39 -0.02 -0.05 16 43 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.21 -3.00 8.06 -2.91 -0.02 -3.02 16 45 H 0.18 -1.48 5.53 -2.91 -0.02 -1.49 16 Total: 0.00 -25.01 360.33 -7.04 -32.05 By element: Atomic # 1 Polarization: -10.64 SS G_CDS: -0.91 Total: -11.55 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 2.13 Total: 2.69 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -0.77 Total: -2.30 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -8.08 Total: -41.93 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.09 Total: 0.81 kcal Atomic # 16 Polarization: 21.72 SS G_CDS: -1.50 Total: 20.22 kcal Total: -25.01 -7.04 -32.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_13652106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.692 kcal (2) G-P(sol) polarization free energy of solvation -25.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds