Wall clock time and date at job start Sat Mar 6 2021 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47274 * 2 1 4 4 C 1.50699 * 109.47014 * 120.00245 * 2 1 3 5 5 C 1.33387 * 125.20701 * 73.87423 * 4 2 1 6 6 S 1.76210 * 122.53728 * 359.70628 * 5 4 2 7 7 O 1.42099 * 106.40036 * 183.21449 * 6 5 4 8 8 O 1.42104 * 106.39737 * 316.13215 * 6 5 4 9 9 N 1.65596 * 107.21883 * 69.67208 * 6 5 4 10 10 C 1.46498 * 119.99886 * 63.22816 * 9 6 5 11 11 C 1.53008 * 109.47252 * 263.73515 * 10 9 6 12 12 C 1.52994 * 109.47204 * 300.00512 * 11 10 9 13 13 C 1.53000 * 109.47211 * 299.99575 * 12 11 10 14 14 C 1.53008 * 109.47056 * 60.00188 * 13 12 11 15 15 C 1.53000 * 109.46868 * 300.00265 * 14 13 12 16 16 C 1.53005 * 109.47109 * 299.99529 * 15 14 13 17 17 C 1.53008 * 109.46870 * 60.00472 * 16 15 14 18 18 O 1.42893 * 109.47119 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.46868 * 299.99675 * 17 16 15 20 20 C 1.52994 * 109.47168 * 180.02562 * 11 10 9 21 21 C 1.38425 * 114.92624 * 179.97438 * 5 4 2 22 22 C 1.33392 * 114.91597 * 359.97438 * 21 5 4 23 23 S 1.75884 * 125.20113 * 253.84452 * 4 2 1 24 24 H 0.96702 * 113.99704 * 304.52050 * 1 2 3 25 25 H 1.09007 * 109.46695 * 239.99699 * 2 1 3 26 26 H 1.48503 * 109.99882 * 178.68255 * 3 2 1 27 27 H 1.48500 * 109.99732 * 300.00091 * 3 2 1 28 28 H 0.97000 * 120.00275 * 243.23344 * 9 6 5 29 29 H 1.08999 * 109.47359 * 23.73948 * 10 9 6 30 30 H 1.09004 * 109.46566 * 60.00059 * 11 10 9 31 31 H 1.09006 * 109.47319 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47335 * 59.99717 * 12 11 10 33 33 H 1.09005 * 109.47602 * 180.02562 * 13 12 11 34 34 H 1.09004 * 109.46933 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.47086 * 60.00105 * 14 13 12 36 36 H 1.08996 * 109.46893 * 180.02562 * 15 14 13 37 37 H 1.09005 * 109.46953 * 179.97438 * 16 15 14 38 38 H 1.08992 * 109.47230 * 300.00574 * 16 15 14 39 39 H 0.96699 * 113.99970 * 59.99490 * 18 17 16 40 40 H 1.08995 * 109.47310 * 300.00558 * 19 17 16 41 41 H 1.08996 * 109.46893 * 179.97438 * 19 17 16 42 42 H 1.08999 * 109.47347 * 300.00375 * 20 11 10 43 43 H 1.08995 * 109.47387 * 180.02562 * 20 11 10 44 44 H 1.07996 * 122.54147 * 179.97438 * 21 5 4 45 45 H 1.08001 * 125.20219 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.9022 -2.0302 1.4222 6 16 1.2458 -3.1471 0.2278 7 8 1.3156 -4.4421 0.8086 8 8 0.0346 -2.5689 -0.2392 9 7 2.2870 -3.1554 -1.0599 10 6 3.6623 -3.6296 -0.8868 11 6 4.5878 -2.4345 -0.6494 12 6 4.5211 -1.4911 -1.8520 13 6 4.9653 -2.2378 -3.1113 14 6 4.0399 -3.4329 -3.3488 15 6 4.1065 -4.3763 -2.1461 16 6 5.5429 -4.8716 -1.9654 17 6 6.4683 -3.6765 -1.7280 18 8 7.8097 -4.1391 -1.5586 19 6 6.4017 -2.7331 -2.9306 20 6 6.0241 -2.9297 -0.4693 21 6 2.4214 -2.4554 2.6329 22 6 2.8726 -1.4809 3.4241 23 16 2.6463 0.0737 2.6331 24 1 -0.3933 0.5006 0.7279 25 1 1.7923 -0.5139 -0.8900 26 1 3.5347 1.7702 0.0321 27 1 1.5615 2.4678 -1.2085 28 1 1.9863 -2.8463 -1.9287 29 1 3.7098 -4.3018 -0.0300 30 1 4.2712 -1.9025 0.2478 31 1 5.1801 -0.6394 -1.6827 32 1 3.4978 -1.1383 -1.9807 33 1 4.9183 -1.5655 -3.9681 34 1 4.3567 -3.9652 -4.2457 35 1 3.0166 -3.0801 -3.4775 36 1 3.4476 -5.2279 -2.3155 37 1 5.5904 -5.5434 -1.1083 38 1 5.8593 -5.4036 -2.8625 39 1 8.1580 -4.6229 -2.3200 40 1 6.7181 -3.2651 -3.8278 41 1 7.0606 -1.8815 -2.7613 42 1 6.0719 -3.6021 0.3873 43 1 6.6834 -2.0784 -0.2997 44 1 2.4584 -3.4971 2.9154 45 1 3.3092 -1.6244 4.4015 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17849790_14772022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:20 Heat of formation + Delta-G solvation = -119.068291 kcal Electronic energy + Delta-G solvation = -33132.428975 eV Core-core repulsion = 28948.485945 eV Total energy + Delta-G solvation = -4183.943029 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.094 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -42.83266 -39.58567 -38.22540 -37.88696 -37.37425 -36.69733 -35.54274 -33.89489 -33.08897 -31.85343 -30.78057 -27.48686 -27.12491 -26.52133 -24.43570 -22.93665 -22.75763 -22.34786 -21.73206 -20.11041 -19.17077 -19.08683 -18.55405 -18.14811 -17.86184 -17.30613 -16.87745 -16.24422 -16.09215 -15.93365 -15.62814 -15.46244 -15.38704 -15.18802 -15.10998 -14.79968 -14.54926 -14.29929 -14.19302 -13.91355 -13.71727 -13.62713 -13.53516 -13.48760 -13.00198 -12.90925 -12.83943 -12.74462 -12.53353 -12.46141 -12.23877 -12.19357 -12.05540 -11.91881 -11.73712 -11.56189 -11.38531 -10.99966 -10.74859 -10.61889 -10.38679 -10.22051 -9.84312 -5.37213 -0.69710 -0.48418 0.31095 0.55152 0.96354 1.08786 1.41726 1.70249 2.04468 2.78004 2.98880 3.11983 3.24010 3.30484 3.40361 3.47762 3.65064 3.74304 3.83169 3.91064 3.96919 3.98540 4.00653 4.06584 4.09410 4.12274 4.18536 4.22616 4.27278 4.44754 4.51789 4.56882 4.65411 4.67835 4.80140 4.85126 4.86623 4.88278 4.89959 4.93972 4.96715 5.02943 5.09509 5.13820 5.23071 5.31367 5.34002 5.85873 6.41950 6.64914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.498 6.498 2 C -0.059 4.059 3 Si 0.663 3.337 4 C -0.099 4.099 5 C -0.659 4.659 6 S 2.696 3.304 7 O -0.955 6.955 8 O -0.925 6.925 9 N -1.112 6.112 10 C 0.160 3.840 11 C -0.103 4.103 12 C -0.112 4.112 13 C -0.084 4.084 14 C -0.113 4.113 15 C -0.085 4.085 16 C -0.137 4.137 17 C 0.135 3.865 18 O -0.559 6.559 19 C -0.137 4.137 20 C -0.096 4.096 21 C -0.077 4.077 22 C -0.207 4.207 23 S 0.151 5.849 24 H 0.377 0.623 25 H 0.125 0.875 26 H -0.234 1.234 27 H -0.226 1.226 28 H 0.418 0.582 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.377 0.623 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.158 0.842 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 3.375 -0.148 4.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.302 6.302 2 C -0.173 4.173 3 Si 0.561 3.439 4 C -0.220 4.220 5 C -0.759 4.759 6 S 2.782 3.218 7 O -0.945 6.945 8 O -0.915 6.915 9 N -0.872 5.872 10 C 0.053 3.947 11 C -0.123 4.123 12 C -0.149 4.149 13 C -0.103 4.103 14 C -0.150 4.150 15 C -0.105 4.105 16 C -0.176 4.176 17 C 0.094 3.906 18 O -0.365 6.365 19 C -0.175 4.175 20 C -0.134 4.134 21 C -0.105 4.105 22 C -0.342 4.342 23 S 0.415 5.585 24 H 0.223 0.777 25 H 0.142 0.858 26 H -0.158 1.158 27 H -0.149 1.149 28 H 0.254 0.746 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.225 0.775 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.175 0.825 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.104 4.882 0.197 5.789 hybrid contribution 0.271 -1.633 -0.952 1.910 sum 3.375 3.249 -0.756 4.746 Atomic orbital electron populations 1.86844 1.13964 1.76718 1.52666 1.24859 0.87622 1.10365 0.94410 0.94896 0.82332 0.76636 0.90059 1.25056 1.00161 0.96162 1.00634 1.29941 1.20184 1.09355 1.16403 1.02072 0.73016 0.73756 0.72914 1.93593 1.86211 1.36814 1.77903 1.93723 1.39972 1.78400 1.79411 1.55762 1.24415 1.81091 1.25945 1.20849 0.79625 0.94725 0.99538 1.21589 0.94891 0.96568 0.99235 1.21588 1.01401 0.97788 0.94149 1.21045 0.94416 0.96857 0.97981 1.21608 0.99656 0.96065 0.97717 1.21246 0.96755 0.98327 0.94200 1.22210 0.94326 0.97980 1.03065 1.21075 0.81878 0.92567 0.95033 1.86562 1.28594 1.76365 1.45005 1.22200 0.96985 1.00112 0.98171 1.21352 0.94893 1.00446 0.96741 1.19765 0.97772 1.01582 0.91359 1.25894 1.08682 0.94669 1.04996 1.84237 1.55634 1.09936 1.08673 0.77653 0.85826 1.15801 1.14888 0.74588 0.88501 0.90066 0.91398 0.91838 0.90521 0.91055 0.91488 0.89496 0.90507 0.90887 0.77546 0.91470 0.91033 0.90738 0.90667 0.82465 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -0.31 11.04 -55.74 -0.62 -0.92 16 2 C -0.06 0.04 2.02 36.01 0.07 0.11 16 3 Si 0.66 -1.32 30.99 -169.99 -5.27 -6.59 16 4 C -0.10 0.03 5.39 -36.00 -0.19 -0.16 16 5 C -0.66 -0.54 4.76 -41.21 -0.20 -0.73 16 6 S 2.70 6.05 5.26 -107.50 -0.57 5.49 16 7 O -0.96 -4.81 16.76 -57.17 -0.96 -5.77 16 8 O -0.93 -4.55 15.45 -65.71 -1.02 -5.57 16 9 N -1.11 0.74 4.51 -4.89 -0.02 0.72 16 10 C 0.16 -0.16 2.37 -67.93 -0.16 -0.33 16 11 C -0.10 0.14 2.91 -90.62 -0.26 -0.12 16 12 C -0.11 0.20 5.03 -26.73 -0.13 0.07 16 13 C -0.08 0.18 3.20 -90.61 -0.29 -0.11 16 14 C -0.11 0.27 5.01 -26.73 -0.13 0.13 16 15 C -0.09 0.14 2.91 -90.62 -0.26 -0.12 16 16 C -0.14 0.22 4.82 -26.72 -0.13 0.09 16 17 C 0.13 -0.13 1.15 -90.64 -0.10 -0.23 16 18 O -0.56 -0.11 12.98 -35.23 -0.46 -0.56 16 19 C -0.14 0.23 4.82 -26.73 -0.13 0.10 16 20 C -0.10 0.05 4.84 -26.76 -0.13 -0.08 16 21 C -0.08 -0.02 9.70 -41.21 -0.40 -0.42 16 22 C -0.21 0.24 11.23 29.04 0.33 0.57 16 23 S 0.15 -0.25 20.71 -107.50 -2.23 -2.48 16 24 H 0.38 -1.27 8.62 45.56 0.39 -0.88 16 25 H 0.12 -0.15 6.50 -51.93 -0.34 -0.49 16 26 H -0.23 0.12 7.11 56.52 0.40 0.53 16 27 H -0.23 -0.08 7.11 56.52 0.40 0.32 16 28 H 0.42 -0.89 6.78 -34.47 -0.23 -1.12 16 29 H 0.10 -0.05 7.55 -51.93 -0.39 -0.45 16 30 H 0.08 -0.11 6.78 -51.93 -0.35 -0.46 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 32 H 0.06 -0.15 6.35 -51.93 -0.33 -0.48 16 33 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 34 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.07 -0.19 6.51 -51.93 -0.34 -0.53 16 36 H 0.09 -0.13 8.14 -51.93 -0.42 -0.56 16 37 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 38 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 39 H 0.38 -1.20 9.05 45.56 0.41 -0.79 16 40 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 41 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 44 H 0.16 -0.03 7.74 -52.49 -0.41 -0.44 16 45 H 0.18 -0.57 8.06 -52.49 -0.42 -0.99 16 LS Contribution 357.41 15.07 5.39 5.39 Total: 0.00 -9.30 357.41 -13.30 -22.60 By element: Atomic # 1 Polarization: -5.63 SS G_CDS: -5.43 Total: -11.06 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.13 Total: -1.24 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -0.02 Total: 0.72 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -3.05 Total: -12.83 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.27 Total: -6.59 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -2.79 Total: 3.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -9.30 -13.30 -22.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_14772022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.468 kcal (2) G-P(sol) polarization free energy of solvation -9.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds