Wall clock time and date at job start Sat Mar 6 2021 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47190 * 2 1 4 4 C 1.50709 * 109.47160 * 119.99926 * 2 1 3 5 5 C 1.33390 * 125.19957 * 64.99957 * 4 2 1 6 6 C 1.38426 * 114.91472 * 179.97438 * 5 4 2 7 7 S 1.76204 * 122.53707 * 179.97438 * 6 5 4 8 8 O 1.42107 * 106.39916 * 336.45732 * 7 6 5 9 9 O 1.42092 * 106.40187 * 203.53637 * 7 6 5 10 10 N 1.65604 * 107.21808 * 89.99399 * 7 6 5 11 11 C 1.46500 * 119.99759 * 65.00459 * 10 7 6 12 12 C 1.52997 * 109.46927 * 145.00093 * 11 10 7 13 13 C 1.52997 * 109.47457 * 59.99484 * 12 11 10 14 14 C 1.53002 * 109.46817 * 60.00169 * 13 12 11 15 15 C 1.52996 * 109.47346 * 299.99737 * 14 13 12 16 16 C 1.53002 * 109.46891 * 59.99997 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 15 19 19 O 1.42895 * 109.47000 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 21 21 C 1.52999 * 109.46623 * 299.99900 * 18 17 16 22 22 C 1.33381 * 114.92457 * 0.24237 * 6 5 4 23 23 S 1.75884 * 125.20174 * 244.95714 * 4 2 1 24 24 H 0.96705 * 113.99615 * 60.00071 * 1 2 3 25 25 H 1.08998 * 109.47376 * 239.99941 * 2 1 3 26 26 H 1.48489 * 109.99916 * 59.99905 * 3 2 1 27 27 H 1.48502 * 109.99673 * 181.31837 * 3 2 1 28 28 H 1.07997 * 122.53913 * 359.94468 * 5 4 2 29 29 H 0.96998 * 119.99915 * 245.00360 * 10 7 6 30 30 H 1.09000 * 109.47381 * 24.99737 * 11 10 7 31 31 H 1.09001 * 109.46989 * 299.99155 * 12 11 10 32 32 H 1.08993 * 109.47194 * 299.99651 * 13 12 11 33 33 H 1.09002 * 109.46695 * 179.97438 * 13 12 11 34 34 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 35 35 H 1.08992 * 109.47554 * 180.02562 * 15 14 13 36 36 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 37 37 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 38 38 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 39 39 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 40 40 H 0.96696 * 114.00485 * 299.99339 * 19 18 17 41 41 H 1.09002 * 109.47153 * 180.02562 * 20 18 17 42 42 H 1.09001 * 109.46832 * 60.00321 * 20 18 17 43 43 H 1.09000 * 109.47486 * 299.99829 * 21 18 17 44 44 H 1.09002 * 109.46716 * 179.97438 * 21 18 17 45 45 H 1.08000 * 125.20624 * 179.75525 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7534 -2.0052 1.4974 6 6 2.3064 -2.4360 2.6911 7 16 2.1902 -4.1058 3.2413 8 8 1.0538 -4.6631 2.5950 9 8 2.3435 -4.0746 4.6536 10 7 3.5088 -4.9112 2.6454 11 6 4.8547 -4.5455 3.0938 12 6 5.7264 -5.8007 3.1668 13 6 5.8080 -6.4463 1.7822 14 6 6.4235 -5.4548 0.7927 15 6 5.5517 -4.1996 0.7195 16 6 5.4700 -3.5541 2.1043 17 6 6.8756 -3.1721 2.5725 18 6 7.7475 -4.4273 2.6456 19 8 9.0601 -4.0707 3.0835 20 6 7.8291 -5.0730 1.2609 21 6 7.1321 -5.4187 3.6352 22 6 2.9289 -1.4901 3.3959 23 16 2.8429 0.0407 2.5338 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5138 -0.8899 26 1 1.5616 2.4679 1.2084 27 1 3.5347 1.7702 -0.0321 28 1 1.2180 -2.6670 0.8328 29 1 3.3900 -5.6250 1.9995 30 1 4.7965 -4.0856 4.0803 31 1 5.2880 -6.5070 3.8718 32 1 4.8067 -6.7185 1.4486 33 1 6.4295 -7.3403 1.8342 34 1 6.4820 -5.9150 -0.1937 35 1 5.9898 -3.4935 0.0143 36 1 4.5503 -4.4717 0.3859 37 1 4.8486 -2.6601 2.0523 38 1 7.3141 -2.4658 1.8676 39 1 6.8175 -2.7118 3.5588 40 1 9.5117 -3.4432 2.5027 41 1 8.4499 -5.9674 1.3131 42 1 8.2675 -4.3666 0.5560 43 1 7.0739 -4.9588 4.6217 44 1 7.7529 -6.3132 3.6869 45 1 3.4137 -1.6413 4.3490 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17849790_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:25 Heat of formation + Delta-G solvation = -123.422253 kcal Electronic energy + Delta-G solvation = -32079.173328 eV Core-core repulsion = 27895.041497 eV Total energy + Delta-G solvation = -4184.131831 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.094 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.82863 -39.46821 -38.28468 -37.89137 -37.62399 -36.86149 -35.55344 -33.88795 -33.08603 -32.03532 -30.78522 -27.28160 -27.11305 -26.55271 -24.89820 -22.88121 -22.73449 -22.42312 -21.22324 -20.14020 -19.20190 -19.00330 -18.55466 -18.41056 -18.09420 -17.78549 -17.06359 -16.32321 -16.02350 -15.91992 -15.64936 -15.53854 -15.49718 -15.36638 -14.66502 -14.62906 -14.46912 -14.30308 -14.21828 -14.14613 -13.72443 -13.67353 -13.60792 -13.46775 -13.14042 -13.05357 -12.93633 -12.88364 -12.63247 -12.53862 -12.25146 -12.23548 -12.07303 -11.94932 -11.80936 -11.51538 -11.38768 -11.12520 -10.64016 -10.54445 -10.43064 -10.18553 -9.90312 -5.39737 -0.77178 -0.53370 0.28643 0.54219 0.92726 1.06316 1.41921 1.73270 1.98679 2.70137 2.98873 3.11881 3.23820 3.28250 3.38731 3.62101 3.65630 3.72583 3.77990 3.83469 3.89827 3.95129 4.03679 4.05063 4.10758 4.12373 4.19661 4.22246 4.26116 4.43545 4.52911 4.56285 4.60776 4.66286 4.79777 4.84646 4.85371 4.88110 4.89531 4.94138 4.96811 5.02298 5.04733 5.15070 5.23979 5.33055 5.33441 5.83356 6.42554 6.63722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.035 4.035 3 Si 0.671 3.329 4 C -0.182 4.182 5 C -0.036 4.036 6 C -0.683 4.683 7 S 2.707 3.293 8 O -0.950 6.950 9 O -0.951 6.951 10 N -1.107 6.107 11 C 0.157 3.843 12 C -0.085 4.085 13 C -0.113 4.113 14 C -0.085 4.085 15 C -0.108 4.108 16 C -0.104 4.104 17 C -0.137 4.137 18 C 0.135 3.865 19 O -0.559 6.559 20 C -0.137 4.137 21 C -0.098 4.098 22 C -0.083 4.083 23 S 0.139 5.861 24 H 0.386 0.614 25 H 0.086 0.914 26 H -0.234 1.234 27 H -0.239 1.239 28 H 0.158 0.842 29 H 0.420 0.580 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.377 0.623 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 2.725 -6.325 7.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.148 4.148 3 Si 0.569 3.431 4 C -0.300 4.300 5 C -0.065 4.065 6 C -0.782 4.782 7 S 2.793 3.207 8 O -0.940 6.940 9 O -0.941 6.941 10 N -0.867 5.867 11 C 0.050 3.950 12 C -0.105 4.105 13 C -0.151 4.151 14 C -0.103 4.103 15 C -0.146 4.146 16 C -0.125 4.125 17 C -0.175 4.175 18 C 0.095 3.905 19 O -0.365 6.365 20 C -0.175 4.175 21 C -0.137 4.137 22 C -0.222 4.222 23 S 0.403 5.597 24 H 0.234 0.766 25 H 0.104 0.896 26 H -0.158 1.158 27 H -0.163 1.163 28 H 0.176 0.824 29 H 0.257 0.743 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.224 0.776 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.581 3.903 -3.932 6.597 hybrid contribution -0.129 -1.050 -1.328 1.698 sum 3.452 2.853 -5.259 6.908 Atomic orbital electron populations 1.86537 1.16581 1.81833 1.49869 1.23984 0.86111 1.09665 0.95050 0.94728 0.81798 0.78107 0.88421 1.23683 1.08451 0.97019 1.00798 1.19570 0.97171 0.95059 0.94659 1.30060 1.15287 1.25967 1.06911 1.01692 0.72405 0.72782 0.73781 1.93620 1.47115 1.76604 1.76630 1.93612 1.85871 1.86506 1.28123 1.55636 1.20036 1.49923 1.61114 1.20887 0.80862 0.95808 0.97416 1.21275 0.94634 0.96314 0.98237 1.21609 1.01241 0.98207 0.94016 1.21049 0.94291 0.95811 0.99171 1.21527 1.00301 0.96853 0.95910 1.21586 0.96431 0.98434 0.96007 1.22189 0.95065 0.97886 1.02397 1.21088 0.82491 0.93478 0.93490 1.86567 1.28899 1.66936 1.54106 1.22203 0.97271 1.01571 0.96443 1.21412 0.94586 0.99175 0.98485 1.25922 0.98618 0.95557 1.02119 1.84492 1.50913 1.11706 1.12631 0.76581 0.89586 1.15784 1.16302 0.82425 0.74322 0.88618 0.89165 0.91405 0.90944 0.90498 0.91605 0.91240 0.90419 0.91121 0.90779 0.77610 0.90913 0.91637 0.90666 0.90355 0.79686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.13 12.86 -35.23 -0.45 -0.32 16 2 C -0.04 0.03 2.95 36.01 0.11 0.14 16 3 Si 0.67 -1.23 30.98 -169.99 -5.27 -6.50 16 4 C -0.18 -0.26 5.73 -36.00 -0.21 -0.46 16 5 C -0.04 -0.06 9.59 -41.21 -0.40 -0.45 16 6 C -0.68 -0.86 4.99 -41.21 -0.21 -1.07 16 7 S 2.71 4.88 5.78 -107.50 -0.62 4.26 16 8 O -0.95 -4.57 17.63 -57.17 -1.01 -5.58 16 9 O -0.95 -4.20 16.97 -57.17 -0.97 -5.17 16 10 N -1.11 1.45 4.74 -4.89 -0.02 1.42 16 11 C 0.16 -0.25 2.39 -67.93 -0.16 -0.41 16 12 C -0.08 0.15 2.90 -90.62 -0.26 -0.11 16 13 C -0.11 0.28 5.01 -26.73 -0.13 0.15 16 14 C -0.08 0.21 3.19 -90.62 -0.29 -0.08 16 15 C -0.11 0.26 5.04 -26.73 -0.13 0.13 16 16 C -0.10 0.22 2.91 -90.62 -0.26 -0.05 16 17 C -0.14 0.26 4.81 -26.73 -0.13 0.14 16 18 C 0.13 -0.17 1.15 -90.62 -0.10 -0.27 16 19 O -0.56 0.00 12.98 -35.23 -0.46 -0.46 16 20 C -0.14 0.26 4.82 -26.73 -0.13 0.14 16 21 C -0.10 0.09 4.84 -26.73 -0.13 -0.04 16 22 C -0.08 -0.04 9.76 29.03 0.28 0.25 16 23 S 0.14 0.14 20.60 -107.50 -2.21 -2.08 16 24 H 0.39 -2.12 8.74 45.56 0.40 -1.72 16 25 H 0.09 -0.26 7.96 -51.93 -0.41 -0.67 16 26 H -0.23 -0.31 7.11 56.52 0.40 0.10 16 27 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 28 H 0.16 0.16 7.96 -52.49 -0.42 -0.25 16 29 H 0.42 -1.20 6.81 -34.47 -0.23 -1.43 16 30 H 0.10 -0.14 7.50 -51.93 -0.39 -0.53 16 31 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 32 H 0.07 -0.22 6.51 -51.93 -0.34 -0.56 16 33 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 34 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 35 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 36 H 0.07 -0.19 7.45 -51.93 -0.39 -0.57 16 37 H 0.08 -0.15 6.19 -51.93 -0.32 -0.47 16 38 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 39 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 40 H 0.38 -1.25 9.05 45.56 0.41 -0.83 16 41 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.06 -0.15 8.14 -51.93 -0.42 -0.58 16 43 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 44 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 45 H 0.19 -0.30 8.00 -52.49 -0.42 -0.72 16 LS Contribution 364.43 15.07 5.49 5.49 Total: 0.00 -10.53 364.43 -13.21 -23.74 By element: Atomic # 1 Polarization: -7.27 SS G_CDS: -5.54 Total: -12.80 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.16 Total: -2.01 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -0.02 Total: 1.42 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -2.89 Total: -11.52 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.27 Total: -6.50 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.84 Total: 2.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -10.53 -13.21 -23.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.682 kcal (2) G-P(sol) polarization free energy of solvation -10.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds