Wall clock time and date at job start Sat Mar 6 2021 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47190 * 2 1 4 4 C 1.50709 * 109.47160 * 119.99926 * 2 1 3 5 5 C 1.33390 * 125.19957 * 64.99957 * 4 2 1 6 6 C 1.38426 * 114.91472 * 179.97438 * 5 4 2 7 7 S 1.76204 * 122.53707 * 179.97438 * 6 5 4 8 8 O 1.42107 * 106.39916 * 336.45732 * 7 6 5 9 9 O 1.42092 * 106.40187 * 203.53637 * 7 6 5 10 10 N 1.65604 * 107.21808 * 89.99399 * 7 6 5 11 11 C 1.46500 * 119.99759 * 65.00459 * 10 7 6 12 12 C 1.52997 * 109.46927 * 145.00093 * 11 10 7 13 13 C 1.52997 * 109.47457 * 59.99484 * 12 11 10 14 14 C 1.53002 * 109.46817 * 60.00169 * 13 12 11 15 15 C 1.52996 * 109.47346 * 299.99737 * 14 13 12 16 16 C 1.53002 * 109.46891 * 59.99997 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 15 19 19 O 1.42895 * 109.47000 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 21 21 C 1.52999 * 109.46623 * 299.99900 * 18 17 16 22 22 C 1.33381 * 114.92457 * 0.24237 * 6 5 4 23 23 S 1.75884 * 125.20174 * 244.95714 * 4 2 1 24 24 H 0.96705 * 113.99615 * 60.00071 * 1 2 3 25 25 H 1.08998 * 109.47376 * 239.99941 * 2 1 3 26 26 H 1.48489 * 109.99916 * 59.99905 * 3 2 1 27 27 H 1.48502 * 109.99673 * 181.31837 * 3 2 1 28 28 H 1.07997 * 122.53913 * 359.94468 * 5 4 2 29 29 H 0.96998 * 119.99915 * 245.00360 * 10 7 6 30 30 H 1.09000 * 109.47381 * 24.99737 * 11 10 7 31 31 H 1.09001 * 109.46989 * 299.99155 * 12 11 10 32 32 H 1.08993 * 109.47194 * 299.99651 * 13 12 11 33 33 H 1.09002 * 109.46695 * 179.97438 * 13 12 11 34 34 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 35 35 H 1.08992 * 109.47554 * 180.02562 * 15 14 13 36 36 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 37 37 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 38 38 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 39 39 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 40 40 H 0.96696 * 114.00485 * 299.99339 * 19 18 17 41 41 H 1.09002 * 109.47153 * 180.02562 * 20 18 17 42 42 H 1.09001 * 109.46832 * 60.00321 * 20 18 17 43 43 H 1.09000 * 109.47486 * 299.99829 * 21 18 17 44 44 H 1.09002 * 109.46716 * 179.97438 * 21 18 17 45 45 H 1.08000 * 125.20624 * 179.75525 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7534 -2.0052 1.4974 6 6 2.3064 -2.4360 2.6911 7 16 2.1902 -4.1058 3.2413 8 8 1.0538 -4.6631 2.5950 9 8 2.3435 -4.0746 4.6536 10 7 3.5088 -4.9112 2.6454 11 6 4.8547 -4.5455 3.0938 12 6 5.7264 -5.8007 3.1668 13 6 5.8080 -6.4463 1.7822 14 6 6.4235 -5.4548 0.7927 15 6 5.5517 -4.1996 0.7195 16 6 5.4700 -3.5541 2.1043 17 6 6.8756 -3.1721 2.5725 18 6 7.7475 -4.4273 2.6456 19 8 9.0601 -4.0707 3.0835 20 6 7.8291 -5.0730 1.2609 21 6 7.1321 -5.4187 3.6352 22 6 2.9289 -1.4901 3.3959 23 16 2.8429 0.0407 2.5338 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5138 -0.8899 26 1 1.5616 2.4679 1.2084 27 1 3.5347 1.7702 -0.0321 28 1 1.2180 -2.6670 0.8328 29 1 3.3900 -5.6250 1.9995 30 1 4.7965 -4.0856 4.0803 31 1 5.2880 -6.5070 3.8718 32 1 4.8067 -6.7185 1.4486 33 1 6.4295 -7.3403 1.8342 34 1 6.4820 -5.9150 -0.1937 35 1 5.9898 -3.4935 0.0143 36 1 4.5503 -4.4717 0.3859 37 1 4.8486 -2.6601 2.0523 38 1 7.3141 -2.4658 1.8676 39 1 6.8175 -2.7118 3.5588 40 1 9.5117 -3.4432 2.5027 41 1 8.4499 -5.9674 1.3131 42 1 8.2675 -4.3666 0.5560 43 1 7.0739 -4.9588 4.6217 44 1 7.7529 -6.3132 3.6869 45 1 3.4137 -1.6413 4.3490 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17849790_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:24 Heat of formation + Delta-G solvation = -128.123812 kcal Electronic energy + Delta-G solvation = -32079.377203 eV Core-core repulsion = 27895.041497 eV Total energy + Delta-G solvation = -4184.335706 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.094 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.69382 -39.49194 -38.52144 -37.83900 -37.55863 -37.12730 -35.47933 -33.74341 -32.96392 -32.04603 -30.68523 -27.27650 -26.95732 -26.44124 -24.94310 -22.74352 -22.57627 -22.32885 -21.27157 -20.20963 -19.17782 -19.01819 -18.46397 -18.43421 -18.04213 -17.89174 -17.01230 -16.29822 -16.06397 -15.89236 -15.55231 -15.48516 -15.37874 -15.23755 -14.63095 -14.52275 -14.39965 -14.29891 -14.26427 -14.14108 -13.74482 -13.54886 -13.49931 -13.42097 -13.36672 -13.31374 -12.97115 -12.84893 -12.66912 -12.47662 -12.24314 -12.13172 -11.92770 -11.91081 -11.78535 -11.38384 -11.22352 -11.02403 -10.58401 -10.40938 -10.33389 -10.18752 -9.96450 -5.26357 -0.89169 -0.60615 0.23953 0.48840 0.88053 1.14885 1.52073 1.82792 1.92689 2.57113 3.09385 3.14628 3.35281 3.40401 3.45446 3.68793 3.79450 3.84515 3.84974 3.97599 4.02527 4.07523 4.10970 4.19144 4.21878 4.26136 4.31650 4.37767 4.38207 4.53966 4.60182 4.68901 4.72929 4.79387 4.81764 4.94265 4.96236 5.01740 5.02742 5.06084 5.06738 5.12233 5.18943 5.32780 5.40443 5.48023 5.49321 5.96376 6.80779 6.85755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.044 4.044 3 Si 0.752 3.248 4 C -0.194 4.194 5 C -0.047 4.047 6 C -0.686 4.686 7 S 2.724 3.276 8 O -0.982 6.982 9 O -0.980 6.980 10 N -1.093 6.093 11 C 0.155 3.845 12 C -0.082 4.082 13 C -0.114 4.114 14 C -0.082 4.082 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.135 4.135 18 C 0.134 3.866 19 O -0.579 6.579 20 C -0.134 4.134 21 C -0.101 4.101 22 C -0.080 4.080 23 S 0.127 5.873 24 H 0.407 0.593 25 H 0.113 0.887 26 H -0.281 1.281 27 H -0.263 1.263 28 H 0.161 0.839 29 H 0.429 0.571 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.389 0.611 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 2.912 -7.674 8.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.157 4.157 3 Si 0.655 3.345 4 C -0.311 4.311 5 C -0.075 4.075 6 C -0.786 4.786 7 S 2.812 3.188 8 O -0.972 6.972 9 O -0.970 6.970 10 N -0.856 5.856 11 C 0.048 3.952 12 C -0.102 4.102 13 C -0.152 4.152 14 C -0.101 4.101 15 C -0.146 4.146 16 C -0.122 4.122 17 C -0.173 4.173 18 C 0.094 3.906 19 O -0.387 6.387 20 C -0.172 4.172 21 C -0.139 4.139 22 C -0.219 4.219 23 S 0.391 5.609 24 H 0.259 0.741 25 H 0.130 0.870 26 H -0.207 1.207 27 H -0.189 1.189 28 H 0.179 0.821 29 H 0.268 0.732 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.785 4.067 -5.319 7.691 hybrid contribution -0.154 -1.062 -0.876 1.385 sum 3.631 3.005 -6.194 7.784 Atomic orbital electron populations 1.86482 1.16838 1.82453 1.51618 1.24201 0.86103 1.10331 0.95033 0.93793 0.79036 0.75698 0.85946 1.24051 1.08373 0.97154 1.01543 1.19682 0.97531 0.95384 0.94919 1.29923 1.15949 1.25528 1.07192 1.00891 0.72196 0.72750 0.72933 1.93572 1.49120 1.77468 1.77023 1.93572 1.86359 1.87022 1.30085 1.55325 1.19348 1.49771 1.61147 1.20977 0.80448 0.96200 0.97617 1.21244 0.93958 0.96165 0.98803 1.21639 1.01876 0.98183 0.93489 1.21042 0.93868 0.95815 0.99357 1.21543 1.00630 0.96855 0.95549 1.21562 0.96237 0.98270 0.96127 1.22164 0.95029 0.97701 1.02413 1.21118 0.82167 0.93671 0.93655 1.86531 1.29572 1.67547 1.55081 1.22164 0.97586 1.01299 0.96106 1.21429 0.95078 0.99052 0.98388 1.26161 0.98118 0.95075 1.02535 1.84565 1.51145 1.12147 1.13086 0.74102 0.86988 1.20733 1.18875 0.82135 0.73220 0.88896 0.89212 0.90411 0.90923 0.89899 0.91218 0.90732 0.90337 0.90273 0.91263 0.76160 0.91722 0.90958 0.91517 0.90994 0.78055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.69 12.86 -148.98 -1.92 -1.22 16 2 C -0.04 0.11 2.95 71.24 0.21 0.32 16 3 Si 0.75 -2.98 30.98 68.60 2.13 -0.85 16 4 C -0.19 -0.52 5.73 24.59 0.14 -0.38 16 5 C -0.05 -0.16 9.59 21.22 0.20 0.05 16 6 C -0.69 -1.95 4.99 21.22 0.11 -1.85 16 7 S 2.72 11.53 5.78 -56.49 -0.33 11.20 16 8 O -0.98 -10.23 17.63 -128.00 -2.26 -12.49 16 9 O -0.98 -9.52 16.97 -128.00 -2.17 -11.69 16 10 N -1.09 2.78 4.74 -169.39 -0.80 1.98 16 11 C 0.15 -0.47 2.39 44.99 0.11 -0.36 16 12 C -0.08 0.28 2.90 -10.79 -0.03 0.25 16 13 C -0.11 0.62 5.01 30.59 0.15 0.78 16 14 C -0.08 0.47 3.19 -10.79 -0.03 0.43 16 15 C -0.11 0.63 5.04 30.59 0.15 0.79 16 16 C -0.10 0.46 2.91 -10.79 -0.03 0.43 16 17 C -0.13 0.54 4.81 30.60 0.15 0.69 16 18 C 0.13 -0.32 1.15 -10.79 -0.01 -0.33 16 19 O -0.58 -0.17 12.98 -148.98 -1.93 -2.10 16 20 C -0.13 0.57 4.82 30.59 0.15 0.71 16 21 C -0.10 0.12 4.84 30.60 0.15 0.27 16 22 C -0.08 -0.09 9.76 66.72 0.65 0.56 16 23 S 0.13 0.29 20.60 -56.49 -1.16 -0.87 16 24 H 0.41 -4.93 8.74 -74.05 -0.65 -5.58 16 25 H 0.11 -0.87 7.96 -2.39 -0.02 -0.89 16 26 H -0.28 -1.03 7.11 99.48 0.71 -0.33 16 27 H -0.26 0.03 7.11 99.48 0.71 0.73 16 28 H 0.16 0.36 7.96 -2.91 -0.02 0.33 16 29 H 0.43 -2.56 6.81 -96.75 -0.66 -3.22 16 30 H 0.09 -0.22 7.50 -2.39 -0.02 -0.23 16 31 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.08 -0.57 6.51 -2.39 -0.02 -0.59 16 33 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.07 -0.49 7.45 -2.38 -0.02 -0.51 16 37 H 0.08 -0.34 6.19 -2.39 -0.01 -0.36 16 38 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.39 -2.56 9.05 -74.06 -0.67 -3.23 16 41 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.20 -0.62 8.00 -2.91 -0.02 -0.64 16 Total: 0.00 -23.94 364.43 -7.27 -31.22 By element: Atomic # 1 Polarization: -16.63 SS G_CDS: -0.89 Total: -17.52 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 2.06 Total: 2.35 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -0.80 Total: 1.98 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -8.28 Total: -27.50 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: 2.13 Total: -0.85 kcal Atomic # 16 Polarization: 11.83 SS G_CDS: -1.49 Total: 10.34 kcal Total: -23.94 -7.27 -31.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.908 kcal (2) G-P(sol) polarization free energy of solvation -23.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds