Wall clock time and date at job start Sat Mar 6 2021 01:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86306 * 109.46922 * 2 1 4 4 C 1.50700 * 109.47113 * 119.99796 * 2 1 3 5 5 C 1.38206 * 120.00029 * 75.61484 * 4 2 1 6 6 S 1.76196 * 120.00062 * 359.97438 * 5 4 2 7 7 O 1.42095 * 106.40256 * 310.10081 * 6 5 4 8 8 O 1.42106 * 106.40305 * 177.18105 * 6 5 4 9 9 N 1.65605 * 107.21821 * 63.64462 * 6 5 4 10 10 C 1.46494 * 120.00361 * 64.56928 * 9 6 5 11 11 C 1.52990 * 109.47587 * 215.91074 * 10 9 6 12 12 C 1.52995 * 109.47436 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46994 * 60.00399 * 12 11 10 14 14 C 1.53003 * 109.47010 * 299.99722 * 13 12 11 15 15 C 1.52998 * 109.46887 * 59.99938 * 14 13 12 16 16 C 1.53004 * 109.47061 * 60.00193 * 15 14 13 17 17 C 1.52991 * 109.47306 * 299.99892 * 16 15 14 18 18 O 1.42898 * 109.47650 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47463 * 59.99935 * 13 12 11 20 20 C 1.53000 * 109.47102 * 300.00141 * 17 16 15 21 21 C 1.38260 * 120.00049 * 179.72357 * 5 4 2 22 22 C 1.38215 * 120.00070 * 0.27264 * 21 5 4 23 23 C 1.38258 * 119.99801 * 359.97438 * 22 21 5 24 24 C 1.38212 * 119.99994 * 359.97438 * 23 22 21 25 25 H 0.96704 * 114.00682 * 305.20200 * 1 2 3 26 26 H 1.09000 * 109.47648 * 239.99809 * 2 1 3 27 27 H 1.48498 * 109.99939 * 299.99803 * 3 2 1 28 28 H 1.48501 * 110.00082 * 61.31740 * 3 2 1 29 29 H 0.96997 * 119.99315 * 244.57769 * 9 6 5 30 30 H 1.09004 * 109.47275 * 335.91414 * 10 9 6 31 31 H 1.09008 * 109.47117 * 59.99902 * 11 10 9 32 32 H 1.08993 * 109.47518 * 299.99935 * 12 11 10 33 33 H 1.09007 * 109.47301 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.47428 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47485 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47094 * 300.00625 * 14 13 12 37 37 H 1.09007 * 109.47173 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.46903 * 59.99973 * 16 15 14 39 39 H 1.09001 * 109.46984 * 179.97438 * 16 15 14 40 40 H 0.96702 * 113.99878 * 300.00159 * 18 17 16 41 41 H 1.08997 * 109.47184 * 60.00128 * 19 13 12 42 42 H 1.08999 * 109.47050 * 180.02562 * 19 13 12 43 43 H 1.08996 * 109.47217 * 299.99493 * 20 17 16 44 44 H 1.09007 * 109.47068 * 179.97438 * 20 17 16 45 45 H 1.08002 * 119.99839 * 180.25201 * 21 5 4 46 46 H 1.08002 * 119.99837 * 179.97438 * 22 21 5 47 47 H 1.07997 * 120.00074 * 179.97438 * 23 22 21 48 48 H 1.08002 * 119.99951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8813 -2.0897 1.3009 6 16 1.2296 -3.0177 -0.0477 7 8 -0.0217 -2.4281 -0.3730 8 8 1.3762 -4.3878 0.2999 9 7 2.2218 -2.7563 -1.3475 10 6 3.6136 -3.2119 -1.3100 11 6 4.5001 -2.2044 -2.0445 12 6 5.9538 -2.6799 -2.0047 13 6 6.0622 -4.0458 -2.6855 14 6 5.1757 -5.0536 -1.9509 15 6 3.7221 -4.5779 -1.9906 16 6 3.2634 -4.4606 -3.4456 17 6 4.1499 -3.4530 -4.1801 18 8 3.7220 -3.3438 -5.5391 19 6 5.6037 -3.9285 -4.1403 20 6 4.0415 -2.0870 -3.4994 21 6 2.3474 -2.7418 2.4275 22 6 2.8582 -2.0139 3.4856 23 6 2.9035 -0.6337 3.4172 24 6 2.4385 0.0180 2.2906 25 1 -0.3934 0.5092 0.7218 26 1 1.7924 -0.5138 -0.8899 27 1 1.5614 2.4679 -1.2085 28 1 1.5877 2.4586 1.2242 29 1 1.8814 -2.3013 -2.1336 30 1 3.9407 -3.2959 -0.2736 31 1 4.4232 -1.2312 -1.5593 32 1 6.2805 -2.7635 -0.9683 33 1 6.5854 -1.9622 -2.5285 34 1 7.0977 -4.3849 -2.6568 35 1 5.2533 -6.0268 -2.4355 36 1 5.5024 -5.1371 -0.9144 37 1 3.0905 -5.2956 -1.4669 38 1 3.3407 -5.4337 -3.9304 39 1 2.2277 -4.1221 -3.4738 40 1 3.7644 -4.1742 -6.0328 41 1 6.2352 -3.2107 -4.6636 42 1 5.6805 -4.9018 -4.6251 43 1 3.0059 -1.7481 -3.5278 44 1 4.6734 -1.3692 -4.0225 45 1 2.3120 -3.8199 2.4808 46 1 3.2219 -2.5232 4.3657 47 1 3.3022 -0.0649 4.2441 48 1 2.4735 1.0962 2.2373 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17849790_2726874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:36 Heat of formation + Delta-G solvation = -123.686489 kcal Electronic energy + Delta-G solvation = -34546.472356 eV Core-core repulsion = 30273.176821 eV Total energy + Delta-G solvation = -4273.295536 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.138 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -42.74050 -40.76123 -38.30764 -37.71387 -37.42693 -36.66133 -35.97871 -33.78019 -32.92215 -32.47412 -32.15920 -31.24156 -27.09142 -27.01343 -26.44638 -24.49695 -22.87866 -22.83428 -22.50914 -22.32154 -20.49370 -19.18339 -19.06367 -18.28541 -18.09077 -17.98475 -17.19830 -16.90860 -16.51588 -16.07240 -15.95308 -15.89442 -15.61186 -15.45239 -15.40479 -15.07488 -14.98131 -14.81275 -14.47830 -14.20033 -13.99389 -13.89877 -13.57281 -13.52612 -13.38438 -13.32052 -12.96949 -12.86107 -12.74955 -12.70232 -12.40239 -12.33041 -12.05531 -12.01540 -11.97244 -11.91072 -11.63664 -11.48095 -11.31302 -10.93259 -10.74558 -10.53157 -10.49160 -10.27489 -10.14498 -5.12269 -0.59509 -0.28451 0.04649 1.05512 1.42672 1.81994 1.95086 2.33853 2.79130 3.03637 3.20546 3.35789 3.37443 3.41387 3.48421 3.69824 3.76745 3.78947 3.82631 3.94550 4.00665 4.03650 4.06082 4.08150 4.13201 4.17856 4.20061 4.24657 4.30246 4.35200 4.48924 4.49939 4.61856 4.68436 4.69796 4.77867 4.88526 4.91429 4.94755 4.97778 4.99542 5.02128 5.02957 5.07609 5.11731 5.18337 5.23689 5.32555 5.41295 5.45115 5.63602 5.90567 6.38653 6.71726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.488 6.488 2 C -0.112 4.112 3 Si 0.693 3.307 4 C -0.012 4.012 5 C -0.655 4.655 6 S 2.682 3.318 7 O -0.925 6.925 8 O -0.959 6.959 9 N -1.113 6.113 10 C 0.164 3.836 11 C -0.089 4.089 12 C -0.110 4.110 13 C -0.086 4.086 14 C -0.110 4.110 15 C -0.101 4.101 16 C -0.137 4.137 17 C 0.134 3.866 18 O -0.561 6.561 19 C -0.137 4.137 20 C -0.100 4.100 21 C -0.022 4.022 22 C -0.134 4.134 23 C -0.057 4.057 24 C -0.145 4.145 25 H 0.371 0.629 26 H 0.118 0.882 27 H -0.249 1.249 28 H -0.255 1.255 29 H 0.419 0.581 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.377 0.623 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 1.541 2.001 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.292 6.292 2 C -0.222 4.222 3 Si 0.593 3.407 4 C -0.014 4.014 5 C -0.741 4.741 6 S 2.771 3.229 7 O -0.915 6.915 8 O -0.949 6.949 9 N -0.874 5.874 10 C 0.057 3.943 11 C -0.109 4.109 12 C -0.148 4.148 13 C -0.105 4.105 14 C -0.149 4.149 15 C -0.121 4.121 16 C -0.175 4.175 17 C 0.094 3.906 18 O -0.367 6.367 19 C -0.175 4.175 20 C -0.137 4.137 21 C -0.042 4.042 22 C -0.153 4.153 23 C -0.076 4.076 24 C -0.163 4.163 25 H 0.218 0.782 26 H 0.136 0.864 27 H -0.173 1.173 28 H -0.180 1.180 29 H 0.256 0.744 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.224 0.776 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.163 0.837 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.392 2.035 1.836 6.955 hybrid contribution -0.623 -0.168 0.540 0.842 sum 5.769 1.866 2.376 6.512 Atomic orbital electron populations 1.86976 1.14726 1.74010 1.53531 1.25424 0.86584 1.12627 0.97586 0.94954 0.91464 0.73528 0.80771 1.19926 0.93453 0.92160 0.95875 1.30860 1.18222 1.06229 1.18822 1.02431 0.73428 0.73899 0.73139 1.93733 1.37455 1.77820 1.82496 1.93587 1.86179 1.31350 1.83740 1.55849 1.23613 1.75228 1.32676 1.20787 0.79747 0.93663 1.00087 1.21372 0.95031 0.99126 0.95408 1.21585 0.95135 0.96763 1.01322 1.21074 0.99650 0.95486 0.94290 1.21586 0.93655 0.98633 1.00985 1.21548 0.97531 0.96891 0.96134 1.22168 1.00264 0.99548 0.95494 1.21089 0.92387 0.95388 0.81753 1.86551 1.89027 1.37948 1.23152 1.22199 0.96558 1.01775 0.96945 1.21418 1.02324 0.95776 0.94232 1.21092 0.91151 1.00787 0.91135 1.21404 1.00342 0.94355 0.99163 1.21479 0.94233 0.94806 0.97035 1.21312 1.00605 1.00410 0.93981 0.78233 0.86428 1.17315 1.17983 0.74416 0.89316 0.89294 0.91116 0.90880 0.90464 0.91211 0.91218 0.89128 0.91396 0.90912 0.77591 0.91020 0.91631 0.91168 0.90496 0.83701 0.84628 0.84715 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.49 -1.15 10.58 -57.77 -0.61 -1.77 16 2 C -0.11 0.01 1.88 36.01 0.07 0.08 16 3 Si 0.69 -1.19 30.20 -169.99 -5.13 -6.32 16 4 C -0.01 0.00 5.27 -104.62 -0.55 -0.55 16 5 C -0.66 -0.64 5.71 -39.59 -0.23 -0.87 16 6 S 2.68 6.26 4.90 -107.50 -0.53 5.73 16 7 O -0.93 -5.23 15.02 -66.42 -1.00 -6.22 16 8 O -0.96 -4.36 16.34 -57.17 -0.93 -5.29 16 9 N -1.11 0.72 3.46 -4.90 -0.02 0.70 16 10 C 0.16 -0.27 2.26 -67.94 -0.15 -0.43 16 11 C -0.09 0.25 2.90 -90.63 -0.26 -0.01 16 12 C -0.11 0.34 5.19 -26.73 -0.14 0.20 16 13 C -0.09 0.21 3.19 -90.62 -0.29 -0.08 16 14 C -0.11 0.21 5.19 -26.73 -0.14 0.07 16 15 C -0.10 0.09 2.91 -90.62 -0.26 -0.18 16 16 C -0.14 0.09 4.66 -26.73 -0.12 -0.04 16 17 C 0.13 -0.12 1.15 -90.62 -0.10 -0.22 16 18 O -0.56 -0.26 12.98 -35.23 -0.46 -0.72 16 19 C -0.14 0.24 4.81 -26.73 -0.13 0.11 16 20 C -0.10 0.14 4.66 -26.73 -0.12 0.01 16 21 C -0.02 0.00 9.55 -39.58 -0.38 -0.38 16 22 C -0.13 0.17 10.05 -39.58 -0.40 -0.22 16 23 C -0.06 0.11 10.05 -39.58 -0.40 -0.29 16 24 C -0.14 0.18 8.66 -39.58 -0.34 -0.16 16 25 H 0.37 -0.24 8.61 45.56 0.39 0.15 16 26 H 0.12 -0.15 5.79 -51.93 -0.30 -0.45 16 27 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 28 H -0.25 0.09 6.66 56.52 0.38 0.46 16 29 H 0.42 -0.61 6.47 -34.47 -0.22 -0.84 16 30 H 0.09 -0.22 7.83 -51.93 -0.41 -0.62 16 31 H 0.09 -0.37 8.14 -51.92 -0.42 -0.80 16 32 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 33 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 34 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 37 H 0.09 0.06 7.74 -51.93 -0.40 -0.34 16 38 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.07 0.02 7.43 -51.93 -0.39 -0.37 16 40 H 0.38 -0.99 9.04 45.56 0.41 -0.58 16 41 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 43 H 0.07 -0.09 6.51 -51.93 -0.34 -0.42 16 44 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 45 H 0.15 -0.06 7.34 -52.49 -0.39 -0.44 16 46 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 47 H 0.13 -0.56 8.06 -52.49 -0.42 -0.98 16 48 H 0.14 -0.38 4.88 -52.49 -0.26 -0.64 16 LS Contribution 364.49 15.07 5.49 5.49 Total: 0.00 -9.90 364.49 -13.33 -23.23 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: -6.19 Total: -11.88 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.96 Total: -2.95 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -0.02 Total: 0.70 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -3.00 Total: -14.00 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.13 Total: -6.32 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -0.53 Total: 5.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -9.90 -13.33 -23.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_2726874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.458 kcal (2) G-P(sol) polarization free energy of solvation -9.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds