Wall clock time and date at job start Sat Mar 6 2021 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86306 * 109.46922 * 2 1 4 4 C 1.50700 * 109.47113 * 119.99796 * 2 1 3 5 5 C 1.38206 * 120.00029 * 75.61484 * 4 2 1 6 6 S 1.76196 * 120.00062 * 359.97438 * 5 4 2 7 7 O 1.42095 * 106.40256 * 310.10081 * 6 5 4 8 8 O 1.42106 * 106.40305 * 177.18105 * 6 5 4 9 9 N 1.65605 * 107.21821 * 63.64462 * 6 5 4 10 10 C 1.46494 * 120.00361 * 64.56928 * 9 6 5 11 11 C 1.52990 * 109.47587 * 215.91074 * 10 9 6 12 12 C 1.52995 * 109.47436 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46994 * 60.00399 * 12 11 10 14 14 C 1.53003 * 109.47010 * 299.99722 * 13 12 11 15 15 C 1.52998 * 109.46887 * 59.99938 * 14 13 12 16 16 C 1.53004 * 109.47061 * 60.00193 * 15 14 13 17 17 C 1.52991 * 109.47306 * 299.99892 * 16 15 14 18 18 O 1.42898 * 109.47650 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47463 * 59.99935 * 13 12 11 20 20 C 1.53000 * 109.47102 * 300.00141 * 17 16 15 21 21 C 1.38260 * 120.00049 * 179.72357 * 5 4 2 22 22 C 1.38215 * 120.00070 * 0.27264 * 21 5 4 23 23 C 1.38258 * 119.99801 * 359.97438 * 22 21 5 24 24 C 1.38212 * 119.99994 * 359.97438 * 23 22 21 25 25 H 0.96704 * 114.00682 * 305.20200 * 1 2 3 26 26 H 1.09000 * 109.47648 * 239.99809 * 2 1 3 27 27 H 1.48498 * 109.99939 * 299.99803 * 3 2 1 28 28 H 1.48501 * 110.00082 * 61.31740 * 3 2 1 29 29 H 0.96997 * 119.99315 * 244.57769 * 9 6 5 30 30 H 1.09004 * 109.47275 * 335.91414 * 10 9 6 31 31 H 1.09008 * 109.47117 * 59.99902 * 11 10 9 32 32 H 1.08993 * 109.47518 * 299.99935 * 12 11 10 33 33 H 1.09007 * 109.47301 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.47428 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47485 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47094 * 300.00625 * 14 13 12 37 37 H 1.09007 * 109.47173 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.46903 * 59.99973 * 16 15 14 39 39 H 1.09001 * 109.46984 * 179.97438 * 16 15 14 40 40 H 0.96702 * 113.99878 * 300.00159 * 18 17 16 41 41 H 1.08997 * 109.47184 * 60.00128 * 19 13 12 42 42 H 1.08999 * 109.47050 * 180.02562 * 19 13 12 43 43 H 1.08996 * 109.47217 * 299.99493 * 20 17 16 44 44 H 1.09007 * 109.47068 * 179.97438 * 20 17 16 45 45 H 1.08002 * 119.99839 * 180.25201 * 21 5 4 46 46 H 1.08002 * 119.99837 * 179.97438 * 22 21 5 47 47 H 1.07997 * 120.00074 * 179.97438 * 23 22 21 48 48 H 1.08002 * 119.99951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8813 -2.0897 1.3009 6 16 1.2296 -3.0177 -0.0477 7 8 -0.0217 -2.4281 -0.3730 8 8 1.3762 -4.3878 0.2999 9 7 2.2218 -2.7563 -1.3475 10 6 3.6136 -3.2119 -1.3100 11 6 4.5001 -2.2044 -2.0445 12 6 5.9538 -2.6799 -2.0047 13 6 6.0622 -4.0458 -2.6855 14 6 5.1757 -5.0536 -1.9509 15 6 3.7221 -4.5779 -1.9906 16 6 3.2634 -4.4606 -3.4456 17 6 4.1499 -3.4530 -4.1801 18 8 3.7220 -3.3438 -5.5391 19 6 5.6037 -3.9285 -4.1403 20 6 4.0415 -2.0870 -3.4994 21 6 2.3474 -2.7418 2.4275 22 6 2.8582 -2.0139 3.4856 23 6 2.9035 -0.6337 3.4172 24 6 2.4385 0.0180 2.2906 25 1 -0.3934 0.5092 0.7218 26 1 1.7924 -0.5138 -0.8899 27 1 1.5614 2.4679 -1.2085 28 1 1.5877 2.4586 1.2242 29 1 1.8814 -2.3013 -2.1336 30 1 3.9407 -3.2959 -0.2736 31 1 4.4232 -1.2312 -1.5593 32 1 6.2805 -2.7635 -0.9683 33 1 6.5854 -1.9622 -2.5285 34 1 7.0977 -4.3849 -2.6568 35 1 5.2533 -6.0268 -2.4355 36 1 5.5024 -5.1371 -0.9144 37 1 3.0905 -5.2956 -1.4669 38 1 3.3407 -5.4337 -3.9304 39 1 2.2277 -4.1221 -3.4738 40 1 3.7644 -4.1742 -6.0328 41 1 6.2352 -3.2107 -4.6636 42 1 5.6805 -4.9018 -4.6251 43 1 3.0059 -1.7481 -3.5278 44 1 4.6734 -1.3692 -4.0225 45 1 2.3120 -3.8199 2.4808 46 1 3.2219 -2.5232 4.3657 47 1 3.3022 -0.0649 4.2441 48 1 2.4735 1.0962 2.2373 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17849790_2726874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:35 Heat of formation + Delta-G solvation = -126.014653 kcal Electronic energy + Delta-G solvation = -34546.573313 eV Core-core repulsion = 30273.176821 eV Total energy + Delta-G solvation = -4273.396493 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.138 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.62439 -40.68448 -38.50493 -37.70806 -37.49691 -36.94769 -35.90984 -33.65159 -32.86025 -32.39210 -32.08035 -31.16023 -27.03060 -26.88276 -26.34604 -24.42964 -22.80233 -22.71482 -22.41397 -22.21018 -20.56534 -19.19522 -19.03925 -18.32181 -18.11722 -17.96904 -17.17534 -16.85244 -16.46428 -16.13970 -15.88909 -15.82141 -15.61671 -15.38131 -15.33256 -15.01847 -14.86811 -14.70957 -14.35491 -14.17996 -13.92067 -13.83641 -13.47647 -13.46580 -13.32321 -13.30142 -13.17322 -13.07468 -12.84487 -12.74991 -12.33646 -12.33501 -11.99276 -11.94868 -11.81610 -11.78942 -11.58802 -11.40441 -11.16471 -10.85599 -10.72219 -10.45182 -10.39560 -10.20860 -10.05929 -4.99763 -0.69473 -0.27026 0.14141 1.15200 1.53020 1.89887 1.92212 2.40905 2.67425 3.15772 3.23737 3.41579 3.45927 3.50647 3.53936 3.82232 3.84020 3.92092 3.98768 4.05234 4.11565 4.16966 4.17855 4.22508 4.26634 4.32459 4.33873 4.35454 4.38415 4.45032 4.58862 4.65750 4.76901 4.79726 4.80868 4.89103 4.99829 5.04816 5.07566 5.11650 5.13538 5.17570 5.17946 5.18145 5.25947 5.31092 5.40173 5.48422 5.54780 5.57452 5.76676 5.94172 6.46209 6.85926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.517 6.517 2 C -0.136 4.136 3 Si 0.788 3.212 4 C -0.018 4.018 5 C -0.663 4.663 6 S 2.689 3.311 7 O -0.967 6.967 8 O -0.990 6.990 9 N -1.104 6.104 10 C 0.161 3.839 11 C -0.084 4.084 12 C -0.109 4.109 13 C -0.085 4.085 14 C -0.109 4.109 15 C -0.102 4.102 16 C -0.137 4.137 17 C 0.133 3.867 18 O -0.580 6.580 19 C -0.134 4.134 20 C -0.104 4.104 21 C -0.038 4.038 22 C -0.134 4.134 23 C -0.052 4.052 24 C -0.146 4.146 25 H 0.379 0.621 26 H 0.122 0.878 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.422 0.578 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.387 0.613 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.143 0.857 46 H 0.158 0.842 47 H 0.165 0.835 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 2.814 3.481 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.323 6.323 2 C -0.243 4.243 3 Si 0.690 3.310 4 C -0.020 4.020 5 C -0.752 4.752 6 S 2.782 3.218 7 O -0.957 6.957 8 O -0.980 6.980 9 N -0.866 5.866 10 C 0.054 3.946 11 C -0.104 4.104 12 C -0.147 4.147 13 C -0.103 4.103 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.175 4.175 17 C 0.093 3.907 18 O -0.388 6.388 19 C -0.171 4.171 20 C -0.142 4.142 21 C -0.057 4.057 22 C -0.153 4.153 23 C -0.070 4.070 24 C -0.164 4.164 25 H 0.227 0.773 26 H 0.140 0.860 27 H -0.224 1.224 28 H -0.192 1.192 29 H 0.260 0.740 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.236 0.764 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.160 0.840 46 H 0.176 0.824 47 H 0.182 0.818 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.538 3.252 3.301 9.715 hybrid contribution -1.316 -0.586 0.063 1.442 sum 7.222 2.667 3.363 8.401 Atomic orbital electron populations 1.86943 1.16396 1.74736 1.54244 1.25875 0.85581 1.14782 0.98081 0.93978 0.89673 0.70043 0.77331 1.19960 0.93846 0.91732 0.96418 1.30500 1.19664 1.06622 1.18402 1.01780 0.73097 0.73271 0.73665 1.93676 1.40222 1.78317 1.83440 1.93540 1.86636 1.33426 1.84409 1.55593 1.23871 1.75181 1.31954 1.20960 0.79146 0.93583 1.00869 1.21398 0.95003 0.99701 0.94287 1.21615 0.94626 0.96310 1.02133 1.21082 0.99773 0.95854 0.93586 1.21583 0.92785 0.98727 1.01585 1.21536 0.98089 0.97037 0.95626 1.22153 0.99619 0.99719 0.95980 1.21162 0.92823 0.95608 0.81154 1.86518 1.89272 1.39082 1.23942 1.22162 0.95673 1.01662 0.97640 1.21485 1.02066 0.95428 0.95215 1.21228 0.91874 1.01006 0.91603 1.21703 0.99543 0.94858 0.99185 1.21872 0.92977 0.94727 0.97443 1.21553 0.99977 1.01273 0.93615 0.77263 0.86050 1.22395 1.19230 0.74014 0.88253 0.87269 0.89816 0.90088 0.89612 0.91474 0.90451 0.91227 0.91424 0.92390 0.76406 0.91207 0.91584 0.91821 0.90419 0.83975 0.82439 0.81752 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -3.22 10.58 -127.43 -1.35 -4.57 16 2 C -0.14 -0.03 1.88 71.24 0.13 0.10 16 3 Si 0.79 -3.23 30.20 68.60 2.07 -1.16 16 4 C -0.02 0.00 5.27 -19.87 -0.10 -0.10 16 5 C -0.66 -1.71 5.71 22.27 0.13 -1.58 16 6 S 2.69 18.31 4.90 -56.49 -0.28 18.03 16 7 O -0.97 -13.64 15.02 -119.16 -1.79 -15.43 16 8 O -0.99 -11.58 16.34 -128.00 -2.09 -13.67 16 9 N -1.10 -0.36 3.46 -169.41 -0.59 -0.95 16 10 C 0.16 -0.45 2.26 44.99 0.10 -0.34 16 11 C -0.08 0.51 2.90 -10.80 -0.03 0.48 16 12 C -0.11 0.83 5.19 30.59 0.16 0.99 16 13 C -0.08 0.47 3.19 -10.79 -0.03 0.44 16 14 C -0.11 0.41 5.19 30.59 0.16 0.57 16 15 C -0.10 0.05 2.91 -10.79 -0.03 0.02 16 16 C -0.14 -0.05 4.66 30.59 0.14 0.09 16 17 C 0.13 -0.12 1.15 -10.79 -0.01 -0.13 16 18 O -0.58 -1.19 12.98 -148.98 -1.93 -3.12 16 19 C -0.13 0.46 4.81 30.60 0.15 0.61 16 20 C -0.10 0.25 4.66 30.60 0.14 0.39 16 21 C -0.04 -0.02 9.55 22.27 0.21 0.19 16 22 C -0.13 0.57 10.05 22.27 0.22 0.79 16 23 C -0.05 0.33 10.05 22.27 0.22 0.55 16 24 C -0.15 0.64 8.66 22.27 0.19 0.83 16 25 H 0.38 0.00 8.61 -74.05 -0.64 -0.64 16 26 H 0.12 -0.20 5.79 -2.39 -0.01 -0.21 16 27 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 28 H -0.27 0.62 6.66 99.48 0.66 1.28 16 29 H 0.42 -0.37 6.47 -96.75 -0.63 -0.99 16 30 H 0.10 -0.48 7.83 -2.38 -0.02 -0.50 16 31 H 0.11 -1.08 8.14 -2.38 -0.02 -1.10 16 32 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.08 -0.69 8.14 -2.38 -0.02 -0.71 16 34 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 0.26 7.74 -2.38 -0.02 0.24 16 38 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.06 0.18 7.43 -2.39 -0.02 0.16 16 40 H 0.39 -1.55 9.04 -74.06 -0.67 -2.22 16 41 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.06 -0.08 6.51 -2.39 -0.02 -0.10 16 44 H 0.08 -0.19 8.14 -2.38 -0.02 -0.20 16 45 H 0.14 0.04 7.34 -2.91 -0.02 0.02 16 46 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 47 H 0.16 -2.01 8.06 -2.91 -0.02 -2.03 16 48 H 0.15 -1.26 4.88 -2.91 -0.01 -1.27 16 Total: 0.00 -24.52 364.49 -5.13 -29.65 By element: Atomic # 1 Polarization: -11.76 SS G_CDS: -0.92 Total: -12.69 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 1.75 Total: 3.90 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -0.59 Total: -0.95 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -7.16 Total: -36.78 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.07 Total: -1.16 kcal Atomic # 16 Polarization: 18.31 SS G_CDS: -0.28 Total: 18.03 kcal Total: -24.52 -5.13 -29.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_2726874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.363 kcal (2) G-P(sol) polarization free energy of solvation -24.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds