Wall clock time and date at job start Fri Mar 5 2021 22:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 116.99677 * 2 1 4 4 C 1.38746 * 120.02856 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.97202 * 0.02562 * 4 3 2 6 6 O 1.42899 * 109.46785 * 75.00323 * 5 4 3 7 7 Si 1.86292 * 109.47117 * 195.00334 * 5 4 3 8 8 C 1.38195 * 120.05756 * 180.02562 * 4 3 2 9 9 C 1.38153 * 120.10487 * 359.75746 * 8 4 3 10 10 C 1.38789 * 120.05766 * 0.51879 * 9 8 4 11 11 O 1.35897 * 120.02978 * 179.74109 * 10 9 8 12 12 S 1.52201 * 113.99811 * 269.72332 * 11 10 9 13 13 O 1.42098 * 104.27923 * 318.92916 * 12 11 10 14 14 O 1.42102 * 104.27760 * 191.06943 * 12 11 10 15 15 C 1.81396 * 104.44884 * 74.99869 * 12 11 10 16 16 H 1.09000 * 112.90991 * 53.75024 * 15 12 11 17 17 C 1.53786 * 113.61571 * 184.99832 * 15 12 11 18 18 C 1.53781 * 87.17350 * 140.02404 * 17 15 12 19 19 H 1.08998 * 113.61196 * 219.97759 * 18 17 15 20 20 N 1.46505 * 113.61334 * 89.07333 * 18 17 15 21 21 C 1.34776 * 119.99597 * 154.99978 * 20 18 17 22 22 O 1.21512 * 120.00257 * 0.02562 * 21 20 18 23 23 O 1.34638 * 119.99854 * 180.02562 * 21 20 18 24 24 C 1.45201 * 116.99939 * 180.02562 * 23 21 20 25 25 C 1.52992 * 109.47214 * 60.00280 * 24 23 21 26 26 C 1.53005 * 109.46890 * 180.02562 * 24 23 21 27 27 C 1.52998 * 109.46912 * 299.99533 * 24 23 21 28 28 C 1.53781 * 87.08070 * 334.52830 * 18 17 15 29 29 C 1.38610 * 119.94366 * 359.46263 * 10 9 8 30 30 H 1.08995 * 109.47126 * 300.00231 * 1 2 3 31 31 H 1.08994 * 109.47260 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.46771 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46917 * 315.00522 * 5 4 3 34 34 H 0.96705 * 113.99906 * 180.02562 * 6 5 4 35 35 H 1.48503 * 110.00046 * 178.68196 * 7 5 4 36 36 H 1.48499 * 110.00047 * 299.99730 * 7 5 4 37 37 H 1.07997 * 119.94345 * 180.02562 * 8 4 3 38 38 H 1.08004 * 119.97219 * 180.25770 * 9 8 4 39 39 H 1.09002 * 113.61357 * 25.43320 * 17 15 12 40 40 H 1.09002 * 113.61608 * 254.61482 * 17 15 12 41 41 H 0.96995 * 120.00170 * 335.00476 * 20 18 17 42 42 H 1.08999 * 109.47935 * 59.99903 * 25 24 23 43 43 H 1.08997 * 109.47284 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.46845 * 299.99234 * 25 24 23 45 45 H 1.09003 * 109.47433 * 59.99835 * 26 24 23 46 46 H 1.09000 * 109.47220 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.47010 * 300.00083 * 26 24 23 48 48 H 1.08997 * 109.47228 * 60.00713 * 27 24 23 49 49 H 1.09009 * 109.46819 * 180.02562 * 27 24 23 50 50 H 1.08993 * 109.47281 * 300.00108 * 27 24 23 51 51 H 1.09005 * 113.61471 * 139.98321 * 28 18 17 52 52 H 1.08996 * 113.61178 * 270.79663 * 28 18 17 53 53 H 1.08001 * 120.05885 * 180.25366 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4315 1.2843 0.0005 5 6 4.2524 0.0204 0.0005 6 8 4.2199 -0.5685 -1.3010 7 14 6.0132 0.4236 0.4560 8 6 4.0595 2.5154 0.0011 9 6 3.3097 3.6757 -0.0040 10 6 1.9235 3.6077 0.0013 11 8 1.1865 4.7495 0.0016 12 16 0.8503 5.2688 1.3922 13 8 0.5269 4.1007 2.1339 14 8 -0.1186 6.2827 1.1629 15 6 2.4011 5.9943 1.9916 16 1 2.8188 6.7301 1.3044 17 6 2.3304 6.4824 3.4482 18 6 3.7507 5.9203 3.6254 19 1 3.9077 5.4246 4.5834 20 7 4.8072 6.8821 3.3010 21 6 6.0288 6.7537 3.8556 22 8 6.2541 5.8400 4.6243 23 8 6.9996 7.6378 3.5579 24 6 8.2906 7.4375 4.1916 25 6 8.8462 6.0682 3.7955 26 6 9.2576 8.5322 3.7359 27 6 8.1280 7.5019 5.7116 28 6 3.4259 4.9513 2.4764 29 6 1.2913 2.3741 0.0003 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.8406 -0.6802 0.7268 34 1 4.7282 -1.3880 -1.3747 35 1 6.8261 -0.8187 0.4906 36 1 6.5862 1.3782 -0.5267 37 1 5.1380 2.5703 0.0011 38 1 3.8027 4.6367 -0.0078 39 1 1.5788 5.9662 4.0457 40 1 2.2749 7.5668 3.5432 41 1 4.6274 7.6112 2.6872 42 1 8.9620 6.0224 2.7126 43 1 9.8151 5.9177 4.2715 44 1 8.1571 5.2887 4.1206 45 1 8.8616 9.5076 4.0184 46 1 10.2269 8.3816 4.2112 47 1 9.3734 8.4868 2.6530 48 1 7.4390 6.7224 6.0366 49 1 9.0973 7.3520 6.1873 50 1 7.7322 8.4775 5.9937 51 1 4.2551 4.7998 1.7853 52 1 2.9752 4.0160 2.8082 53 1 0.2127 2.3190 0.0003 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_197687_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:43:59 Heat of formation + Delta-G solvation = -179.849879 kcal Electronic energy + Delta-G solvation = -40511.941983 eV Core-core repulsion = 35252.852965 eV Total energy + Delta-G solvation = -5259.089018 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.152 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.47016 -41.88200 -40.79220 -40.33914 -38.55596 -38.44669 -37.80646 -37.44576 -37.29979 -35.28954 -33.94240 -32.56982 -31.61274 -28.50001 -28.29885 -28.25276 -27.23368 -27.00396 -26.91332 -23.92419 -23.67031 -23.38040 -21.87721 -21.21325 -20.77245 -19.94361 -19.38525 -18.89136 -18.78860 -18.56299 -17.79064 -17.67364 -17.49507 -17.26321 -17.10806 -16.74946 -16.63925 -16.13580 -15.84166 -15.73274 -15.43350 -15.38005 -15.31821 -15.12774 -14.54496 -14.40335 -14.27998 -14.16958 -13.99863 -13.97976 -13.77920 -13.76743 -13.49445 -13.45665 -13.30408 -13.29711 -13.08383 -12.86049 -12.82735 -12.80924 -12.75452 -12.47429 -12.29061 -12.22728 -12.17335 -12.04354 -11.82614 -11.81098 -11.34411 -11.29742 -11.05670 -10.45591 -10.23095 -10.20078 -9.43708 -4.90438 -1.15450 -0.18044 0.08072 0.90003 1.14944 1.28119 1.60447 1.77712 1.92821 2.12344 2.21747 2.40079 2.65920 2.99452 3.14511 3.20345 3.31564 3.48673 3.54240 3.62554 3.72236 3.79737 3.85372 3.85626 3.88718 3.97729 4.00087 4.16678 4.24853 4.27986 4.43312 4.46646 4.49665 4.54468 4.57223 4.64474 4.67113 4.68222 4.73271 4.79124 4.82800 4.83737 4.87615 4.88660 4.93552 4.94558 4.97249 5.06539 5.17491 5.32113 5.34581 5.42043 5.44512 5.63653 6.13257 6.41849 6.60213 7.38037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.314 6.314 3 C 0.156 3.844 4 C -0.100 4.100 5 C -0.084 4.084 6 O -0.554 6.554 7 Si 0.768 3.232 8 C -0.062 4.062 9 C -0.148 4.148 10 C 0.097 3.903 11 O -0.669 6.669 12 S 2.595 3.405 13 O -0.966 6.966 14 O -0.971 6.971 15 C -0.625 4.625 16 H 0.191 0.809 17 C -0.114 4.114 18 C 0.153 3.847 19 H 0.114 0.886 20 N -0.683 5.683 21 C 0.648 3.352 22 O -0.585 6.585 23 O -0.369 6.369 24 C 0.129 3.871 25 C -0.181 4.181 26 C -0.140 4.140 27 C -0.182 4.182 28 C -0.133 4.133 29 C -0.201 4.201 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.394 0.606 35 H -0.287 1.287 36 H -0.275 1.275 37 H 0.171 0.829 38 H 0.181 0.819 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.419 0.581 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.059 0.941 51 H 0.118 0.882 52 H 0.120 0.880 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 0.956 2.044 6.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.226 6.226 3 C 0.110 3.890 4 C -0.101 4.101 5 C -0.191 4.191 6 O -0.364 6.364 7 Si 0.671 3.329 8 C -0.080 4.080 9 C -0.168 4.168 10 C 0.055 3.945 11 O -0.629 6.629 12 S 2.696 3.304 13 O -0.964 6.964 14 O -0.969 6.969 15 C -0.736 4.736 16 H 0.208 0.792 17 C -0.154 4.154 18 C 0.047 3.953 19 H 0.132 0.868 20 N -0.343 5.343 21 C 0.402 3.598 22 O -0.475 6.475 23 O -0.284 6.284 24 C 0.093 3.907 25 C -0.238 4.238 26 C -0.197 4.197 27 C -0.239 4.239 28 C -0.172 4.172 29 C -0.222 4.222 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.244 0.756 35 H -0.214 1.214 36 H -0.201 1.201 37 H 0.188 0.812 38 H 0.198 0.802 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.078 0.922 51 H 0.136 0.864 52 H 0.138 0.862 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.486 0.737 1.850 5.837 hybrid contribution -0.695 -0.259 -1.180 1.394 sum 4.792 0.478 0.670 4.862 Atomic orbital electron populations 1.23430 0.76565 1.06013 1.02225 1.86140 1.23091 1.25656 1.87749 1.18668 0.91807 0.84101 0.94452 1.19116 0.90346 0.95667 1.04983 1.24987 1.11244 0.94808 0.88083 1.86556 1.75252 1.44511 1.30109 0.94152 0.71008 0.80232 0.87494 1.21069 1.01452 0.89471 0.95983 1.21526 0.90146 1.01908 1.03206 1.17883 0.89735 0.80978 1.05867 1.85668 1.73770 1.45674 1.57740 1.05427 0.77705 0.74518 0.72731 1.93627 1.83585 1.46889 1.72331 1.93599 1.58924 1.61268 1.83095 1.32264 1.18666 1.13050 1.09645 0.79188 1.23176 0.97730 1.05222 0.89245 1.21585 0.84854 0.89245 0.99584 0.86798 1.44268 1.07665 1.32833 1.49508 1.18256 0.81834 0.80456 0.79294 1.90927 1.81822 1.35599 1.39163 1.86313 1.22051 1.52041 1.67952 1.22314 0.78348 0.97509 0.92517 1.22485 1.02749 0.96274 1.02306 1.21899 0.97900 0.96994 1.02874 1.22490 1.04216 1.02870 0.94304 1.23741 0.97894 0.96542 0.99065 1.21441 1.01890 0.91302 1.07531 0.91549 0.92088 0.85833 0.89675 0.75590 1.21413 1.20116 0.81194 0.80165 0.86281 0.86536 0.74394 0.91691 0.89836 0.90997 0.91427 0.88572 0.91145 0.91329 0.89735 0.92204 0.86391 0.86154 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -1.56 9.82 -92.47 -0.91 -2.47 16 3 C 0.16 0.76 6.66 22.49 0.15 0.91 16 4 C -0.10 -0.18 5.31 -19.75 -0.10 -0.29 16 5 C -0.08 0.02 2.36 71.24 0.17 0.18 16 6 O -0.55 -1.58 12.86 -148.98 -1.92 -3.49 16 7 Si 0.77 -3.11 30.19 68.60 2.07 -1.04 16 8 C -0.06 0.17 8.65 22.24 0.19 0.37 16 9 C -0.15 0.50 6.71 22.38 0.15 0.65 16 10 C 0.10 0.24 4.62 22.49 0.10 0.34 16 11 O -0.67 -2.30 10.05 -61.48 -0.62 -2.92 16 12 S 2.60 5.64 5.15 -56.49 -0.29 5.35 16 13 O -0.97 -5.76 15.59 -118.57 -1.85 -7.61 16 14 O -0.97 -10.24 18.09 -118.57 -2.15 -12.39 16 15 C -0.63 4.95 3.86 31.21 0.12 5.07 16 16 H 0.19 -2.67 8.14 -2.39 -0.02 -2.69 16 17 C -0.11 1.00 7.41 31.12 0.23 1.23 16 18 C 0.15 -1.06 4.32 45.52 0.20 -0.86 16 19 H 0.11 -0.50 7.47 -2.39 -0.02 -0.52 16 20 N -0.68 4.02 5.27 -567.60 -2.99 1.03 16 21 C 0.65 0.56 8.06 129.79 1.05 1.61 16 22 O -0.59 -3.41 11.48 19.80 0.23 -3.18 16 23 O -0.37 -0.30 9.94 -55.47 -0.55 -0.85 16 24 C 0.13 -0.09 1.13 -10.80 -0.01 -0.10 16 25 C -0.18 0.19 8.37 71.98 0.60 0.79 16 26 C -0.14 0.63 8.85 71.98 0.64 1.27 16 27 C -0.18 -0.03 8.37 71.98 0.60 0.57 16 28 C -0.13 1.11 5.14 31.21 0.16 1.27 16 29 C -0.20 -0.98 8.03 22.46 0.18 -0.80 16 30 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 31 H 0.06 -0.08 7.66 -2.39 -0.02 -0.10 16 32 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.09 -0.13 7.82 -2.39 -0.02 -0.15 16 34 H 0.39 -1.97 8.74 -74.05 -0.65 -2.62 16 35 H -0.29 -0.25 7.11 99.48 0.71 0.46 16 36 H -0.27 0.07 6.74 99.48 0.67 0.74 16 37 H 0.17 -1.27 4.89 -2.91 -0.01 -1.29 16 38 H 0.18 -1.97 6.60 -2.91 -0.02 -1.99 16 39 H 0.12 -1.13 8.10 -2.39 -0.02 -1.15 16 40 H 0.12 -1.33 8.14 -2.39 -0.02 -1.35 16 41 H 0.42 -4.34 8.81 -92.71 -0.82 -5.16 16 42 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.08 -0.30 8.14 -2.39 -0.02 -0.31 16 44 H 0.07 0.22 5.88 -2.38 -0.01 0.21 16 45 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 47 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.07 0.32 5.88 -2.39 -0.01 0.31 16 49 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 50 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.12 -1.36 5.98 -2.38 -0.01 -1.37 16 52 H 0.12 -0.93 7.55 -2.39 -0.02 -0.95 16 53 H 0.14 0.61 6.30 -2.91 -0.02 0.59 16 Total: 0.00 -30.16 430.73 -3.92 -34.08 By element: Atomic # 1 Polarization: -19.34 SS G_CDS: -0.49 Total: -19.83 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.54 Total: 13.32 kcal Atomic # 7 Polarization: 4.02 SS G_CDS: -2.99 Total: 1.03 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -7.76 Total: -32.91 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.07 Total: -1.04 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -0.29 Total: 5.35 kcal Total: -30.16 -3.92 -34.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_197687_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.775 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds