Wall clock time and date at job start Fri Mar 5 2021 22:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36003 * 116.99761 * 2 1 4 4 C 1.39158 * 120.06034 * 179.97438 * 3 2 1 5 5 O 1.35986 * 120.06694 * 0.02562 * 4 3 2 6 6 S 1.52208 * 113.99823 * 267.57289 * 5 4 3 7 7 O 1.42097 * 104.27545 * 168.45705 * 6 5 4 8 8 O 1.42101 * 104.27740 * 40.59813 * 6 5 4 9 9 C 1.81404 * 104.44943 * 284.52813 * 6 5 4 10 10 H 1.08997 * 112.85100 * 53.76533 * 9 6 5 11 11 C 1.53785 * 113.61263 * 184.96533 * 9 6 5 12 12 C 1.53779 * 87.07779 * 140.06175 * 11 9 6 13 13 H 1.09004 * 113.61169 * 89.19818 * 12 11 9 14 14 N 1.46500 * 113.61419 * 220.01213 * 12 11 9 15 15 C 1.34773 * 120.00332 * 204.99873 * 14 12 11 16 16 O 1.21517 * 120.00103 * 0.02562 * 15 14 12 17 17 O 1.34631 * 120.00407 * 179.72479 * 15 14 12 18 18 C 1.45195 * 117.00616 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47125 * 60.00001 * 18 17 15 20 20 C 1.52998 * 109.47756 * 180.02562 * 18 17 15 21 21 C 1.53007 * 109.47121 * 300.00710 * 18 17 15 22 22 C 1.53774 * 87.08562 * 334.56921 * 12 11 9 23 23 C 1.38561 * 119.86196 * 179.74302 * 4 3 2 24 24 C 1.38315 * 119.99068 * 0.25709 * 23 4 3 25 25 Br 1.89105 * 119.93632 * 179.97438 * 24 23 4 26 26 C 1.38334 * 120.13123 * 0.02562 * 24 23 4 27 27 C 1.50702 * 119.93881 * 179.97438 * 26 24 23 28 28 O 1.42890 * 109.47170 * 163.73279 * 27 26 24 29 29 Si 1.86299 * 109.46829 * 283.73531 * 27 26 24 30 30 C 1.38245 * 120.13401 * 359.97354 * 26 24 23 31 31 H 1.09003 * 109.47100 * 60.00526 * 1 2 3 32 32 H 1.09004 * 109.46972 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47547 * 300.00266 * 1 2 3 34 34 H 1.08993 * 113.61361 * 25.51570 * 11 9 6 35 35 H 1.08998 * 113.61255 * 254.61554 * 11 9 6 36 36 H 0.97001 * 119.99917 * 25.00843 * 14 12 11 37 37 H 1.09005 * 109.46980 * 60.00314 * 19 18 17 38 38 H 1.08996 * 109.47511 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47040 * 300.00711 * 19 18 17 40 40 H 1.09003 * 109.47012 * 59.99785 * 20 18 17 41 41 H 1.08998 * 109.47621 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.46979 * 300.00162 * 20 18 17 43 43 H 1.08997 * 109.47162 * 59.99217 * 21 18 17 44 44 H 1.08998 * 109.47335 * 179.97438 * 21 18 17 45 45 H 1.09003 * 109.46788 * 299.99689 * 21 18 17 46 46 H 1.08998 * 113.61826 * 139.98533 * 22 12 11 47 47 H 1.09008 * 113.61187 * 270.88484 * 22 12 11 48 48 H 1.07998 * 120.00570 * 180.27675 * 23 4 3 49 49 H 1.09005 * 109.46588 * 43.72817 * 27 26 24 50 50 H 0.96707 * 114.00085 * 180.02562 * 28 27 26 51 51 H 1.48497 * 109.99982 * 305.27009 * 29 27 26 52 52 H 1.48498 * 110.00320 * 66.59267 * 29 27 26 53 53 H 1.07991 * 119.99719 * 180.02562 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4360 1.2862 0.0005 5 8 4.1792 0.1474 0.0005 6 16 4.5663 -0.3392 1.3898 7 8 5.0793 -1.6465 1.1729 8 8 3.3985 -0.1309 2.1721 9 6 5.8905 0.7859 1.9108 10 1 5.6048 1.8356 1.8439 11 6 6.5277 0.4055 3.2577 12 6 7.8810 0.7894 2.6365 13 1 8.1401 1.8398 2.7693 14 7 8.9727 -0.1165 3.0023 15 6 10.2472 0.3213 2.9818 16 8 10.4908 1.4676 2.6603 17 8 11.2501 -0.5095 3.3234 18 6 12.5973 0.0301 3.2789 19 6 12.7029 1.2178 4.2376 20 6 13.5945 -1.0528 3.6959 21 6 12.9143 0.4939 1.8557 22 6 7.2529 0.4762 1.2683 23 6 4.0607 2.5229 -0.0049 24 6 3.3032 3.6802 -0.0054 25 35 4.1574 5.3673 -0.0120 26 6 1.9218 3.6059 0.0000 27 6 1.1007 4.8696 0.0000 28 8 -0.2447 4.5634 -0.3716 29 14 1.1185 5.6216 1.7043 30 6 1.2930 2.3747 0.0054 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 6.4422 -0.6544 3.4973 35 1 6.2261 1.0523 4.0816 36 1 8.7783 -1.0314 3.2592 37 1 12.4771 0.8874 5.2516 38 1 13.7144 1.6226 4.2046 39 1 11.9926 1.9891 3.9402 40 1 13.5191 -1.8987 3.0126 41 1 14.6059 -0.6479 3.6621 42 1 13.3689 -1.3835 4.7097 43 1 12.2039 1.2652 1.5582 44 1 13.9255 0.8993 1.8224 45 1 12.8390 -0.3523 1.1726 46 1 7.5369 1.1801 0.4860 47 1 7.3657 -0.5645 0.9640 48 1 5.1390 2.5833 -0.0090 49 1 1.5228 5.5771 -0.7138 50 1 -0.8314 5.3318 -0.3930 51 1 0.6648 4.6227 2.7050 52 1 2.4875 6.0898 2.0387 53 1 0.2146 2.3193 0.0092 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_2162986_14316444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:52:52 Heat of formation + Delta-G solvation = -182.169050 kcal Electronic energy + Delta-G solvation = -42091.612613 eV Core-core repulsion = 36492.605026 eV Total energy + Delta-G solvation = -5599.007588 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.063 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.74165 -41.96984 -40.54504 -40.40943 -39.37347 -38.55965 -37.96065 -37.50455 -37.36348 -35.44865 -34.22912 -33.35894 -32.67277 -30.50486 -28.75112 -28.38701 -28.32908 -27.35420 -27.18017 -26.93622 -24.10323 -23.61751 -23.45954 -21.96922 -21.56404 -20.95074 -19.78486 -19.52337 -19.29177 -19.03720 -18.76329 -18.37723 -17.68139 -17.34591 -17.26010 -17.03744 -16.80286 -16.59630 -16.39628 -16.29842 -15.95968 -15.72024 -15.65494 -15.46108 -15.37008 -14.68120 -14.51964 -14.45053 -14.33632 -14.26183 -13.99301 -13.93911 -13.81628 -13.58367 -13.48845 -13.44698 -13.31692 -13.16826 -13.09073 -12.95474 -12.92742 -12.90147 -12.89493 -12.73850 -12.59787 -12.57701 -12.32871 -12.13890 -12.12263 -11.57335 -11.51633 -11.42509 -11.29117 -11.16329 -10.92625 -10.33754 -10.07268 -9.53737 -5.06886 -1.31754 -0.47423 -0.41216 0.13816 0.77572 1.09613 1.17154 1.65022 1.65980 1.82979 1.90128 2.01460 2.33294 2.53960 2.75543 2.88931 2.95577 3.10926 3.18467 3.29857 3.35894 3.48807 3.56310 3.71399 3.77222 3.82210 3.91921 3.98470 4.06133 4.12114 4.15203 4.20858 4.21436 4.28894 4.35781 4.40986 4.49231 4.56540 4.57176 4.59398 4.61992 4.64005 4.70217 4.74577 4.76895 4.79657 4.85320 4.87280 5.00423 5.08543 5.21645 5.25074 5.32609 5.52595 5.85823 6.28814 6.82523 7.24863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.322 6.322 3 C 0.161 3.839 4 C 0.009 3.991 5 O -0.651 6.651 6 S 2.590 3.410 7 O -0.954 6.954 8 O -0.971 6.971 9 C -0.631 4.631 10 H 0.183 0.817 11 C -0.114 4.114 12 C 0.157 3.843 13 H 0.133 0.867 14 N -0.696 5.696 15 C 0.647 3.353 16 O -0.588 6.588 17 O -0.370 6.370 18 C 0.127 3.873 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.180 4.180 22 C -0.129 4.129 23 C -0.055 4.055 24 C -0.135 4.135 25 Br -0.003 7.003 26 C 0.000 4.000 27 C -0.083 4.083 28 O -0.556 6.556 29 Si 0.762 3.238 30 C -0.176 4.176 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.418 0.582 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.113 0.887 47 H 0.106 0.894 48 H 0.187 0.813 49 H 0.112 0.888 50 H 0.412 0.588 51 H -0.301 1.301 52 H -0.244 1.244 53 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 6.849 0.602 7.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.234 6.234 3 C 0.111 3.889 4 C -0.034 4.034 5 O -0.610 6.610 6 S 2.690 3.310 7 O -0.952 6.952 8 O -0.969 6.969 9 C -0.741 4.741 10 H 0.200 0.800 11 C -0.153 4.153 12 C 0.052 3.948 13 H 0.151 0.849 14 N -0.355 5.355 15 C 0.400 3.600 16 O -0.478 6.478 17 O -0.285 6.285 18 C 0.090 3.910 19 C -0.237 4.237 20 C -0.196 4.196 21 C -0.238 4.238 22 C -0.168 4.168 23 C -0.077 4.077 24 C -0.215 4.215 25 Br 0.082 6.918 26 C -0.003 4.003 27 C -0.190 4.190 28 O -0.367 6.367 29 Si 0.662 3.338 30 C -0.195 4.195 31 H 0.100 0.900 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.124 0.876 48 H 0.204 0.796 49 H 0.130 0.870 50 H 0.265 0.735 51 H -0.229 1.229 52 H -0.168 1.168 53 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.757 6.503 1.034 6.815 hybrid contribution 0.103 -1.120 -0.348 1.177 sum -1.654 5.384 0.686 5.673 Atomic orbital electron populations 1.23624 0.74872 1.06637 1.03360 1.86163 1.24917 1.25667 1.86674 1.19432 0.90865 0.86570 0.91998 1.17349 0.86555 0.82573 1.16923 1.85704 1.71495 1.46386 1.57402 1.05625 0.76209 0.76058 0.73149 1.93599 1.82224 1.36164 1.83197 1.93609 1.45842 1.86495 1.70946 1.32001 1.13841 1.18442 1.09825 0.79976 1.23238 0.93260 1.04796 0.94017 1.22453 0.82747 0.95886 0.93729 0.84943 1.44779 1.02298 1.16960 1.71461 1.18340 0.82416 0.82972 0.76225 1.90905 1.83847 1.19073 1.53985 1.86322 1.17000 1.43669 1.81471 1.22375 0.76682 0.95160 0.96740 1.22475 1.04348 0.98059 0.98805 1.21899 0.97545 0.97486 1.02648 1.22480 1.03882 1.02405 0.94991 1.23435 0.88772 1.05138 0.99484 1.21307 1.02621 0.87672 0.96087 1.21265 0.93668 0.93061 1.13466 1.96805 1.78362 1.19124 1.97489 1.19583 0.91792 0.95793 0.93136 1.24987 0.85496 0.95503 1.13046 1.86321 1.18095 1.40034 1.92207 0.94856 0.84113 0.83295 0.71558 1.21206 1.02514 0.89188 1.06612 0.90025 0.85767 0.90932 0.87219 0.85753 0.74439 0.91977 0.89467 0.91501 0.91301 0.88258 0.91209 0.91525 0.89436 0.92055 0.86813 0.87571 0.79568 0.87049 0.73511 1.22888 1.16825 0.80681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.32 -3.11 9.97 -76.86 -0.77 -3.87 16 3 C 0.16 1.35 6.00 22.57 0.14 1.49 16 4 C 0.01 0.07 4.76 22.57 0.11 0.18 16 5 O -0.65 -5.67 9.84 -60.41 -0.59 -6.27 16 6 S 2.59 19.67 5.10 -56.49 -0.29 19.38 16 7 O -0.95 -12.78 17.42 -118.57 -2.06 -14.85 16 8 O -0.97 -12.28 16.11 -118.03 -1.90 -14.18 16 9 C -0.63 1.46 3.85 31.12 0.12 1.58 16 10 H 0.18 -1.34 6.23 -2.39 -0.01 -1.35 16 11 C -0.11 0.50 7.42 31.12 0.23 0.73 16 12 C 0.16 -0.36 4.24 45.51 0.19 -0.16 16 13 H 0.13 -0.25 7.46 -2.39 -0.02 -0.27 16 14 N -0.70 -0.11 5.36 -567.62 -3.04 -3.15 16 15 C 0.65 3.80 8.06 129.79 1.05 4.85 16 16 O -0.59 -5.91 11.48 19.79 0.23 -5.68 16 17 O -0.37 -2.00 9.94 -55.41 -0.55 -2.55 16 18 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 19 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 20 C -0.14 0.25 8.85 71.98 0.64 0.89 16 21 C -0.18 -0.53 8.37 71.98 0.60 0.08 16 22 C -0.13 0.32 7.44 31.12 0.23 0.55 16 23 C -0.06 -0.08 8.25 22.37 0.18 0.11 16 24 C -0.13 -0.17 5.96 22.31 0.13 -0.04 16 25 Br 0.00 0.00 29.80 -20.37 -0.61 -0.60 16 26 C 0.00 0.00 4.50 -19.84 -0.09 -0.09 16 27 C -0.08 0.34 2.43 71.24 0.17 0.51 16 28 O -0.56 3.38 11.50 -148.98 -1.71 1.66 16 29 Si 0.76 -3.56 31.36 68.60 2.15 -1.41 16 30 C -0.18 -0.73 8.35 22.35 0.19 -0.54 16 31 H 0.08 -0.27 7.67 -2.39 -0.02 -0.29 16 32 H 0.12 -0.39 8.14 -2.38 -0.02 -0.41 16 33 H 0.07 -0.10 7.65 -2.39 -0.02 -0.12 16 34 H 0.11 -0.61 8.08 -2.39 -0.02 -0.63 16 35 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H 0.42 -1.44 8.84 -92.71 -0.82 -2.26 16 37 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.07 0.49 5.87 -2.39 -0.01 0.48 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.07 0.50 5.89 -2.39 -0.01 0.49 16 44 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.11 -0.10 7.54 -2.38 -0.02 -0.12 16 48 H 0.19 -1.00 7.12 -2.91 -0.02 -1.02 16 49 H 0.11 -0.82 7.15 -2.38 -0.02 -0.84 16 50 H 0.41 -6.69 8.74 -74.05 -0.65 -7.34 16 51 H -0.30 -1.28 7.11 99.48 0.71 -0.57 16 52 H -0.24 0.45 6.25 99.48 0.62 1.07 16 53 H 0.18 0.16 5.39 -2.92 -0.02 0.14 16 Total: 0.00 -31.12 454.06 -4.07 -35.20 By element: Atomic # 1 Polarization: -14.85 SS G_CDS: -0.52 Total: -15.37 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.59 Total: 11.70 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -3.04 Total: -3.15 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -7.36 Total: -45.74 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: 2.15 Total: -1.41 kcal Atomic # 16 Polarization: 19.67 SS G_CDS: -0.29 Total: 19.38 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.61 Total: -0.60 kcal Total: -31.12 -4.07 -35.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_2162986_14316444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.973 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds