Wall clock time and date at job start Fri Mar 5 2021 22:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36007 * 117.00218 * 2 1 4 4 C 1.39145 * 120.06536 * 180.02562 * 3 2 1 5 5 O 1.35994 * 120.06711 * 359.95056 * 4 3 2 6 6 S 1.52205 * 114.00075 * 90.00325 * 5 4 3 7 7 O 1.42098 * 104.27614 * 191.06997 * 6 5 4 8 8 O 1.42102 * 104.27261 * 318.92709 * 6 5 4 9 9 C 1.81404 * 104.44722 * 74.99954 * 6 5 4 10 10 H 1.09003 * 112.85059 * 311.19693 * 9 6 5 11 11 C 1.53777 * 113.61516 * 82.50744 * 9 6 5 12 12 C 1.53778 * 87.08070 * 139.97815 * 11 9 6 13 13 H 1.09001 * 113.68945 * 220.00302 * 12 11 9 14 14 N 1.46500 * 113.61603 * 89.11824 * 12 11 9 15 15 C 1.34775 * 120.00332 * 107.49746 * 14 12 11 16 16 O 1.21509 * 120.00103 * 0.02562 * 15 14 12 17 17 O 1.34638 * 119.99914 * 179.97438 * 15 14 12 18 18 C 1.45206 * 116.99963 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.46873 * 60.00232 * 18 17 15 20 20 C 1.52994 * 109.46914 * 179.97438 * 18 17 15 21 21 C 1.53000 * 109.47102 * 300.00440 * 18 17 15 22 22 C 1.53778 * 87.08115 * 334.56591 * 12 11 9 23 23 C 1.38563 * 119.86394 * 179.97438 * 4 3 2 24 24 C 1.38308 * 119.99119 * 359.97438 * 23 4 3 25 25 Br 1.89101 * 119.93891 * 179.97438 * 24 23 4 26 26 C 1.38333 * 120.12845 * 359.97438 * 24 23 4 27 27 C 1.50697 * 119.93391 * 180.02562 * 26 24 23 28 28 O 1.42910 * 109.47150 * 163.45905 * 27 26 24 29 29 Si 1.86298 * 109.47490 * 283.45843 * 27 26 24 30 30 C 1.38242 * 120.13594 * 359.78862 * 26 24 23 31 31 H 1.08997 * 109.46688 * 299.99868 * 1 2 3 32 32 H 1.08993 * 109.47301 * 60.00230 * 1 2 3 33 33 H 1.08999 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.09000 * 113.61145 * 254.52642 * 11 9 6 35 35 H 1.08996 * 113.61504 * 25.42576 * 11 9 6 36 36 H 0.97001 * 119.99809 * 287.50195 * 14 12 11 37 37 H 1.08999 * 109.47194 * 59.99429 * 19 18 17 38 38 H 1.08997 * 109.47287 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47148 * 300.00242 * 19 18 17 40 40 H 1.09001 * 109.47427 * 60.00715 * 20 18 17 41 41 H 1.09004 * 109.46826 * 180.02562 * 20 18 17 42 42 H 1.09000 * 109.47487 * 300.00314 * 20 18 17 43 43 H 1.08999 * 109.47091 * 59.99652 * 21 18 17 44 44 H 1.08996 * 109.46856 * 180.02562 * 21 18 17 45 45 H 1.08997 * 109.46496 * 299.99879 * 21 18 17 46 46 H 1.08998 * 113.61299 * 270.88244 * 22 12 11 47 47 H 1.09000 * 113.61373 * 139.98667 * 22 12 11 48 48 H 1.08006 * 119.99998 * 179.97438 * 23 4 3 49 49 H 1.08998 * 109.47468 * 43.46172 * 27 26 24 50 50 H 0.96701 * 113.99927 * 180.02562 * 28 27 26 51 51 H 1.48506 * 109.99958 * 305.31609 * 29 27 26 52 52 H 1.48499 * 109.99726 * 66.63052 * 29 27 26 53 53 H 1.07995 * 120.00016 * 180.23131 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4360 1.2862 -0.0005 5 8 4.1792 0.1473 -0.0001 6 16 4.5172 -0.3720 -1.3903 7 8 5.0485 -1.6697 -1.1600 8 8 3.3187 -0.1921 -2.1324 9 6 5.8116 0.7487 -1.9898 10 1 5.5551 1.8000 -1.8590 11 6 7.2194 0.3889 -1.4866 12 6 7.7274 0.7427 -2.8943 13 1 8.4966 0.0655 -3.2654 14 7 8.0886 2.1539 -3.0504 15 6 9.3849 2.5119 -3.1388 16 8 10.2541 1.6643 -3.0895 17 8 9.7168 3.8088 -3.2827 18 6 11.1321 4.1212 -3.3708 19 6 11.7381 3.4052 -4.5794 20 6 11.3118 5.6321 -3.5308 21 6 11.8375 3.6554 -2.0955 22 6 6.3150 0.4085 -3.4024 23 6 4.0607 2.5229 -0.0011 24 6 3.3032 3.6802 -0.0016 25 35 4.1574 5.3673 -0.0016 26 6 1.9219 3.6058 -0.0021 27 6 1.1009 4.8695 -0.0033 28 8 -0.2416 4.5650 -0.3873 29 14 1.1045 5.6141 1.7044 30 6 1.2931 2.3747 -0.0066 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 7.5889 1.0568 -0.7084 35 1 7.3362 -0.6645 -1.2322 36 1 7.3948 2.8306 -3.0900 37 1 11.2355 3.7370 -5.4879 38 1 12.8006 3.6393 -4.6453 39 1 11.6100 2.3287 -4.4659 40 1 10.8800 6.1427 -2.6700 41 1 12.3742 5.8666 -3.5974 42 1 10.8093 5.9636 -4.4395 43 1 11.7094 2.5789 -1.9820 44 1 12.8998 3.8903 -2.1614 45 1 11.4056 4.1655 -1.2345 46 1 6.1846 -0.6396 -3.6719 47 1 5.9543 1.0921 -4.1710 48 1 5.1391 2.5832 -0.0011 49 1 1.5286 5.5801 -0.7105 50 1 -0.8281 5.3335 -0.4101 51 1 0.6435 4.6105 2.6971 52 1 2.4706 6.0816 2.0516 53 1 0.2146 2.3193 -0.0107 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_2162986_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:57:05 Heat of formation + Delta-G solvation = -179.554472 kcal Electronic energy + Delta-G solvation = -42655.817564 eV Core-core repulsion = 37056.923353 eV Total energy + Delta-G solvation = -5598.894211 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.063 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.73171 -42.00690 -40.53083 -40.45457 -39.36894 -38.51901 -37.91944 -37.47348 -37.33610 -35.39538 -34.05243 -33.35387 -32.67052 -30.50062 -28.74842 -28.38452 -28.32161 -27.39311 -27.18422 -26.92734 -24.15254 -23.71180 -23.52671 -21.95271 -21.32519 -20.92252 -19.78929 -19.60282 -19.18155 -19.06777 -18.65881 -18.29111 -17.65708 -17.41437 -17.22013 -17.01599 -16.83417 -16.60584 -16.32890 -16.26618 -15.79814 -15.72052 -15.63394 -15.45116 -15.24671 -14.70236 -14.55125 -14.50886 -14.38599 -14.25447 -14.09354 -13.97946 -13.92918 -13.78477 -13.52184 -13.40321 -13.36835 -13.16412 -13.05911 -12.94553 -12.93290 -12.88852 -12.73953 -12.59800 -12.56618 -12.39196 -12.21925 -12.13417 -12.05610 -11.55590 -11.45282 -11.41292 -11.30137 -11.16936 -10.92681 -10.36178 -10.06974 -9.53403 -5.07450 -1.27192 -0.45871 -0.40744 0.14088 0.80771 1.03252 1.17459 1.64815 1.65931 1.84182 1.90002 1.99739 2.38520 2.55363 2.79851 2.89331 2.96521 3.07208 3.19051 3.30960 3.40056 3.51881 3.63630 3.71941 3.77632 3.82921 3.92356 3.99816 4.07656 4.12900 4.20567 4.21806 4.27513 4.35161 4.39632 4.41587 4.45538 4.56998 4.58631 4.59811 4.62835 4.67860 4.71181 4.75170 4.77319 4.79498 4.86189 4.86981 5.01148 5.09474 5.23102 5.25705 5.33459 5.53557 5.86648 6.29891 6.83313 7.26444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.321 6.321 3 C 0.161 3.839 4 C 0.009 3.991 5 O -0.654 6.654 6 S 2.588 3.412 7 O -0.957 6.957 8 O -0.967 6.967 9 C -0.633 4.633 10 H 0.178 0.822 11 C -0.126 4.126 12 C 0.152 3.848 13 H 0.115 0.885 14 N -0.682 5.682 15 C 0.648 3.352 16 O -0.588 6.588 17 O -0.366 6.366 18 C 0.129 3.871 19 C -0.181 4.181 20 C -0.138 4.138 21 C -0.181 4.181 22 C -0.109 4.109 23 C -0.053 4.053 24 C -0.134 4.134 25 Br -0.002 7.002 26 C 0.000 4.000 27 C -0.082 4.082 28 O -0.556 6.556 29 Si 0.765 3.235 30 C -0.176 4.176 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.419 0.581 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.185 0.815 49 H 0.113 0.887 50 H 0.412 0.588 51 H -0.303 1.303 52 H -0.247 1.247 53 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 10.913 -0.974 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.234 6.234 3 C 0.111 3.889 4 C -0.035 4.035 5 O -0.613 6.613 6 S 2.688 3.312 7 O -0.955 6.955 8 O -0.966 6.966 9 C -0.743 4.743 10 H 0.196 0.804 11 C -0.165 4.165 12 C 0.046 3.954 13 H 0.133 0.867 14 N -0.342 5.342 15 C 0.402 3.598 16 O -0.479 6.479 17 O -0.280 6.280 18 C 0.093 3.907 19 C -0.238 4.238 20 C -0.195 4.195 21 C -0.238 4.238 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.214 4.214 25 Br 0.083 6.917 26 C -0.003 4.003 27 C -0.190 4.190 28 O -0.367 6.367 29 Si 0.666 3.334 30 C -0.195 4.195 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.257 0.743 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.081 0.919 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.202 0.798 49 H 0.130 0.870 50 H 0.265 0.735 51 H -0.231 1.231 52 H -0.172 1.172 53 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.785 9.677 -0.002 10.070 hybrid contribution -0.026 -0.668 -0.310 0.737 sum -2.811 9.009 -0.313 9.442 Atomic orbital electron populations 1.23606 0.74923 1.06580 1.03313 1.86166 1.24868 1.25690 1.86626 1.19452 0.90919 0.86577 0.91966 1.17355 0.86473 0.82677 1.16963 1.85711 1.71917 1.46157 1.57514 1.05699 0.76190 0.76085 0.73239 1.93600 1.81826 1.37085 1.83017 1.93611 1.43911 1.86645 1.72402 1.32248 1.13916 1.17962 1.10200 0.80424 1.23346 0.88866 1.04892 0.99441 1.21589 0.97060 0.81144 0.95596 0.86735 1.44237 1.04440 1.09013 1.76526 1.18254 0.84167 0.81655 0.75708 1.90929 1.48671 1.51880 1.56387 1.86315 1.31250 1.24947 1.85534 1.22351 0.74829 0.97220 0.96347 1.22486 1.02428 1.02061 0.96872 1.21893 1.04065 0.89986 1.03561 1.22483 1.01901 1.03014 0.96434 1.23157 0.93958 1.05471 0.92225 1.21254 1.02467 0.87640 0.96117 1.21261 0.93627 0.93069 1.13482 1.96803 1.78322 1.19057 1.97501 1.19578 0.91805 0.95757 0.93166 1.24990 0.85577 0.95502 1.12930 1.86333 1.18413 1.40103 1.91827 0.94807 0.83882 0.83227 0.71497 1.21202 1.02501 0.89211 1.06627 0.90404 0.90603 0.85859 0.87671 0.86557 0.74338 0.91860 0.89567 0.91658 0.91126 0.88417 0.91117 0.91648 0.89580 0.91864 0.86223 0.85930 0.79756 0.86955 0.73504 1.23056 1.17170 0.80761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.32 -3.08 9.72 -72.74 -0.71 -3.79 16 3 C 0.16 1.29 5.93 22.57 0.13 1.43 16 4 C 0.01 0.06 4.81 22.57 0.11 0.17 16 5 O -0.65 -5.61 9.84 -60.50 -0.60 -6.20 16 6 S 2.59 18.70 5.14 -56.49 -0.29 18.41 16 7 O -0.96 -13.18 17.27 -118.57 -2.05 -15.23 16 8 O -0.97 -11.46 15.81 -117.13 -1.85 -13.31 16 9 C -0.63 1.87 3.90 31.12 0.12 2.00 16 10 H 0.18 -1.49 6.11 -2.39 -0.01 -1.50 16 11 C -0.13 0.31 7.44 31.12 0.23 0.55 16 12 C 0.15 -0.38 4.32 45.52 0.20 -0.18 16 13 H 0.11 -0.02 7.46 -2.39 -0.02 -0.03 16 14 N -0.68 1.49 5.27 -567.62 -2.99 -1.50 16 15 C 0.65 2.81 8.06 129.79 1.05 3.85 16 16 O -0.59 -5.82 11.48 19.81 0.23 -5.60 16 17 O -0.37 -1.19 9.94 -55.47 -0.55 -1.74 16 18 C 0.13 0.19 1.13 -10.80 -0.01 0.17 16 19 C -0.18 -0.37 8.37 71.98 0.60 0.23 16 20 C -0.14 0.46 8.85 71.98 0.64 1.10 16 21 C -0.18 -0.36 8.37 71.98 0.60 0.24 16 22 C -0.11 0.55 7.42 31.12 0.23 0.78 16 23 C -0.05 -0.04 8.24 22.36 0.18 0.15 16 24 C -0.13 -0.05 5.96 22.31 0.13 0.08 16 25 Br 0.00 0.01 29.83 -20.37 -0.61 -0.60 16 26 C 0.00 0.00 4.49 -19.84 -0.09 -0.09 16 27 C -0.08 0.40 2.43 71.23 0.17 0.57 16 28 O -0.56 3.63 11.50 -148.98 -1.71 1.91 16 29 Si 0.77 -4.01 31.38 68.60 2.15 -1.86 16 30 C -0.18 -0.65 8.35 22.35 0.19 -0.46 16 31 H 0.08 -0.24 7.68 -2.39 -0.02 -0.26 16 32 H 0.08 -0.12 7.65 -2.39 -0.02 -0.14 16 33 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.12 -0.15 7.43 -2.39 -0.02 -0.17 16 36 H 0.42 -2.98 8.81 -92.71 -0.82 -3.80 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.06 0.47 5.88 -2.39 -0.01 0.45 16 40 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.06 0.47 5.88 -2.39 -0.01 0.45 16 44 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.12 -0.71 8.10 -2.39 -0.02 -0.73 16 47 H 0.12 -1.08 8.14 -2.39 -0.02 -1.09 16 48 H 0.19 -1.09 7.25 -2.91 -0.02 -1.11 16 49 H 0.11 -0.92 7.13 -2.39 -0.02 -0.94 16 50 H 0.41 -6.90 8.74 -74.06 -0.65 -7.55 16 51 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 52 H -0.25 0.49 6.28 99.48 0.62 1.12 16 53 H 0.18 0.10 5.39 -2.91 -0.02 0.09 16 Total: 0.00 -31.65 453.37 -3.89 -35.54 By element: Atomic # 1 Polarization: -17.21 SS G_CDS: -0.51 Total: -17.72 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.60 Total: 11.69 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: -2.99 Total: -1.50 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -7.24 Total: -43.95 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.15 Total: -1.86 kcal Atomic # 16 Polarization: 18.70 SS G_CDS: -0.29 Total: 18.41 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.61 Total: -0.60 kcal Total: -31.65 -3.89 -35.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_2162986_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.014 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds