Wall clock time and date at job start Fri Mar 5 2021 22:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 C 1.52997 * 109.47184 * 240.00014 * 2 1 3 5 5 O 1.45205 * 109.46914 * 119.99982 * 2 1 3 6 6 C 1.34632 * 117.00023 * 59.99718 * 5 2 1 7 7 O 1.21515 * 120.00105 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00296 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00508 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.89987 * 336.25430 * 9 8 6 11 11 C 1.53774 * 113.61528 * 107.50268 * 9 8 6 12 12 C 1.53778 * 87.07917 * 139.98263 * 11 9 8 13 13 H 1.08998 * 113.68699 * 89.13184 * 12 11 9 14 14 S 1.81410 * 113.61392 * 220.01741 * 12 11 9 15 15 O 1.42098 * 110.53906 * 170.87507 * 14 12 11 16 16 O 1.42099 * 110.53827 * 34.12592 * 14 12 11 17 17 O 1.52195 * 104.44709 * 282.49961 * 14 12 11 18 18 C 1.35923 * 114.00097 * 75.00417 * 17 14 12 19 19 C 1.38815 * 120.06050 * 89.99308 * 18 17 14 20 20 Cl 1.73599 * 120.04123 * 359.97438 * 19 18 17 21 21 C 1.38263 * 119.92349 * 179.71817 * 19 18 17 22 22 C 1.38255 * 120.03844 * 0.30350 * 21 19 18 23 23 C 1.50701 * 119.93623 * 179.97438 * 22 21 19 24 24 O 1.42901 * 109.46985 * 65.00185 * 23 22 21 25 25 Si 1.86302 * 109.46925 * 185.00138 * 23 22 21 26 26 C 1.38279 * 120.12068 * 359.97438 * 22 21 19 27 27 C 1.38145 * 120.07699 * 0.02562 * 26 22 21 28 28 C 1.53775 * 87.08256 * 334.56572 * 12 11 9 29 29 H 1.08995 * 109.47008 * 299.99901 * 1 2 3 30 30 H 1.09001 * 109.46537 * 60.00371 * 1 2 3 31 31 H 1.09002 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47259 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47421 * 300.00112 * 3 2 1 34 34 H 1.09007 * 109.47062 * 59.99685 * 3 2 1 35 35 H 1.09002 * 109.46921 * 299.99641 * 4 2 1 36 36 H 1.08991 * 109.47291 * 59.99985 * 4 2 1 37 37 H 1.08998 * 109.47160 * 180.02562 * 4 2 1 38 38 H 0.97005 * 119.99864 * 0.02562 * 8 6 5 39 39 H 1.09006 * 113.61361 * 25.43602 * 11 9 8 40 40 H 1.08993 * 113.61716 * 254.53452 * 11 9 8 41 41 H 1.07993 * 119.98029 * 180.27469 * 21 19 18 42 42 H 1.09002 * 109.47428 * 305.00183 * 23 22 21 43 43 H 0.96699 * 114.00139 * 60.00036 * 24 23 22 44 44 H 1.48496 * 109.99956 * 58.68173 * 25 23 22 45 45 H 1.48497 * 110.00057 * 180.02562 * 25 23 22 46 46 H 1.07998 * 119.96095 * 180.02562 * 26 22 21 47 47 H 1.08002 * 120.02421 * 180.02562 * 27 26 22 48 48 H 1.09003 * 113.60950 * 139.97532 * 28 12 11 49 49 H 1.08995 * 113.61585 * 270.79872 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 6 1.6747 -4.0672 2.5827 10 1 0.7609 -4.3180 2.0441 11 6 2.8231 -5.0616 2.3442 12 6 2.2750 -5.8600 3.5386 13 1 1.5253 -6.6016 3.2627 14 16 3.5685 -6.5337 4.6175 15 8 2.9987 -7.0737 5.8019 16 8 4.6794 -5.6495 4.6760 17 8 4.0947 -7.7485 3.8665 18 6 4.8927 -7.4421 2.8097 19 6 6.2633 -7.3128 2.9878 20 17 6.9606 -7.5414 4.5611 21 6 7.0731 -7.0069 1.9097 22 6 6.5177 -6.8239 0.6569 23 6 7.4024 -6.4899 -0.5165 24 8 8.2761 -7.5890 -0.7822 25 14 6.3469 -6.1590 -2.0156 26 6 5.1519 -6.9467 0.4786 27 6 4.3383 -7.2522 1.5524 28 6 1.6759 -4.5380 4.0467 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7216 -1.2490 38 1 2.6276 -2.2369 3.0830 39 1 3.8117 -4.6372 2.5194 40 1 2.7513 -5.5919 1.3946 41 1 8.1400 -6.9104 2.0464 42 1 7.9934 -5.6036 -0.2854 43 1 7.8177 -8.4132 -0.9960 44 1 5.4117 -5.0387 -1.7411 45 1 7.2076 -5.8291 -3.1799 46 1 4.7209 -6.8036 -0.5012 47 1 3.2717 -7.3483 1.4122 48 1 0.6779 -4.6457 4.4715 49 1 2.3503 -3.9712 4.6885 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_2163008_14316444.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:59:47 Heat of formation + Delta-G solvation = -153.061431 kcal Electronic energy + Delta-G solvation = -38162.363263 eV Core-core repulsion = 33018.855898 eV Total energy + Delta-G solvation = -5143.507365 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.098 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.44751 -41.91929 -40.37140 -39.97937 -38.49368 -37.96290 -37.91263 -37.41237 -37.23813 -35.41222 -34.19472 -32.37460 -32.23284 -28.37363 -28.32515 -27.36076 -27.08682 -27.03908 -24.44045 -23.77461 -23.46075 -21.90770 -21.48997 -20.86841 -19.82041 -19.25705 -18.97696 -18.84393 -18.49529 -17.77671 -17.32660 -17.20993 -17.06255 -16.75355 -16.33894 -16.15836 -16.04177 -15.60229 -15.54379 -15.37621 -15.06465 -14.87525 -14.54365 -14.50838 -14.45305 -14.24284 -13.90916 -13.89965 -13.69322 -13.54538 -13.41772 -13.33352 -13.24912 -13.13573 -12.91924 -12.88251 -12.86383 -12.78751 -12.66613 -12.55669 -12.38598 -12.30342 -12.20868 -12.02789 -11.87116 -11.41638 -11.38479 -11.12820 -10.55473 -10.36750 -10.11001 -10.01662 -4.99626 -1.25015 -0.32406 -0.16142 0.70299 0.92929 1.14275 1.28390 1.65655 1.69234 2.01744 2.07670 2.33224 2.59984 2.92157 3.10508 3.15072 3.29297 3.34374 3.42985 3.49440 3.64480 3.69877 3.72535 3.78317 3.86554 3.92903 3.95135 4.20301 4.33231 4.35630 4.43886 4.44490 4.53072 4.56717 4.60456 4.64166 4.67959 4.69899 4.75422 4.76186 4.81009 4.83834 4.86047 4.91338 5.01798 5.10518 5.24601 5.26273 5.36047 5.38107 5.55354 6.32850 6.75734 7.28789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.646 3.354 7 O -0.586 6.586 8 N -0.696 5.696 9 C 0.157 3.843 10 H 0.135 0.865 11 C -0.140 4.140 12 C -0.619 4.619 13 H 0.201 0.799 14 S 2.585 3.415 15 O -0.968 6.968 16 O -0.960 6.960 17 O -0.662 6.662 18 C 0.059 3.941 19 C -0.033 4.033 20 Cl -0.061 7.061 21 C -0.078 4.078 22 C -0.083 4.083 23 C -0.079 4.079 24 O -0.552 6.552 25 Si 0.779 3.221 26 C -0.089 4.089 27 C -0.097 4.097 28 C -0.120 4.120 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.417 0.583 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.399 0.601 44 H -0.271 1.271 45 H -0.302 1.302 46 H 0.182 0.818 47 H 0.195 0.805 48 H 0.121 0.879 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 1.058 -7.491 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.287 6.287 6 C 0.400 3.600 7 O -0.476 6.476 8 N -0.355 5.355 9 C 0.052 3.948 10 H 0.152 0.848 11 C -0.179 4.179 12 C -0.730 4.730 13 H 0.218 0.782 14 S 2.685 3.315 15 O -0.966 6.966 16 O -0.958 6.958 17 O -0.620 6.620 18 C 0.016 3.984 19 C -0.062 4.062 20 Cl -0.032 7.032 21 C -0.097 4.097 22 C -0.084 4.084 23 C -0.188 4.188 24 O -0.360 6.360 25 Si 0.684 3.316 26 C -0.106 4.106 27 C -0.116 4.116 28 C -0.159 4.159 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.167 0.833 42 H 0.133 0.867 43 H 0.249 0.751 44 H -0.198 1.198 45 H -0.230 1.230 46 H 0.198 0.802 47 H 0.212 0.788 48 H 0.139 0.861 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.166 1.563 -7.597 8.377 hybrid contribution 0.498 0.331 1.333 1.461 sum -2.668 1.894 -6.263 7.067 Atomic orbital electron populations 1.22480 0.93850 1.03964 1.03441 1.22336 0.94542 0.92400 0.81540 1.21904 1.02364 0.91259 1.04185 1.22481 1.01497 1.02566 0.97219 1.86325 1.71522 1.23525 1.47290 1.18351 0.78475 0.80656 0.82524 1.90901 1.41937 1.70894 1.43897 1.44816 1.54969 1.12314 1.23412 1.22499 0.99139 0.76947 0.96215 0.84754 1.23797 1.00378 0.96278 0.97465 1.31966 1.18314 1.09440 1.13247 0.78210 1.05766 0.76707 0.73345 0.75639 1.93602 1.80577 1.77051 1.45352 1.93655 1.48519 1.67275 1.86342 1.85722 1.67355 1.58984 1.49974 1.18055 0.86953 1.07479 0.85890 1.21390 0.92461 1.03784 0.88588 1.98421 1.84112 1.95003 1.25625 1.21009 1.00898 0.97761 0.90047 1.20683 0.95095 0.97853 0.94792 1.25360 0.98167 0.93224 1.02059 1.86528 1.35598 1.22010 1.91892 0.93880 0.78272 0.86157 0.73310 1.21351 0.91776 0.97497 0.99952 1.21790 1.03949 0.97489 0.88420 1.23248 1.04883 0.90352 0.97418 0.92096 0.89568 0.91273 0.91377 0.88362 0.91313 0.91128 0.89556 0.92197 0.74632 0.87637 0.85472 0.83255 0.86722 0.75084 1.19754 1.23047 0.80156 0.78816 0.86070 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.15 8.37 71.98 0.60 0.45 16 2 C 0.13 0.11 1.13 -10.79 -0.01 0.09 16 3 C -0.14 0.43 8.85 71.98 0.64 1.07 16 4 C -0.18 -0.11 8.37 71.98 0.60 0.49 16 5 O -0.37 -1.17 9.94 -55.42 -0.55 -1.72 16 6 C 0.65 1.80 8.06 129.79 1.05 2.85 16 7 O -0.59 -3.81 11.48 19.79 0.23 -3.59 16 8 N -0.70 2.24 5.36 -567.62 -3.04 -0.80 16 9 C 0.16 -1.05 4.24 45.51 0.19 -0.86 16 10 H 0.13 -0.87 7.47 -2.39 -0.02 -0.89 16 11 C -0.14 1.20 5.10 31.12 0.16 1.36 16 12 C -0.62 4.89 3.96 31.12 0.12 5.01 16 13 H 0.20 -2.93 8.14 -2.39 -0.02 -2.95 16 14 S 2.59 8.08 5.13 -56.49 -0.29 7.79 16 15 O -0.97 -11.46 18.09 -118.57 -2.15 -13.60 16 16 O -0.96 -6.70 14.49 -118.57 -1.72 -8.42 16 17 O -0.66 -2.05 9.52 -61.78 -0.59 -2.64 16 18 C 0.06 0.01 4.64 22.52 0.10 0.12 16 19 C -0.03 -0.12 5.66 22.41 0.13 0.01 16 20 Cl -0.06 -0.53 27.26 -2.72 -0.07 -0.60 16 21 C -0.08 0.05 9.46 22.28 0.21 0.26 16 22 C -0.08 0.48 5.35 -19.85 -0.11 0.37 16 23 C -0.08 0.49 2.80 71.24 0.20 0.69 16 24 O -0.55 2.55 12.83 -148.98 -1.91 0.64 16 25 Si 0.78 -6.36 29.80 68.60 2.04 -4.32 16 26 C -0.09 0.88 8.66 22.26 0.19 1.08 16 27 C -0.10 0.81 6.69 22.36 0.15 0.96 16 28 C -0.12 0.96 7.42 31.12 0.23 1.19 16 29 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.07 0.35 5.88 -2.39 -0.01 0.34 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.10 -0.62 8.14 -2.39 -0.02 -0.63 16 34 H 0.07 -0.21 8.14 -2.38 -0.02 -0.22 16 35 H 0.07 0.32 5.88 -2.39 -0.01 0.31 16 36 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.42 -2.55 8.84 -92.70 -0.82 -3.37 16 39 H 0.11 -0.72 7.53 -2.38 -0.02 -0.73 16 40 H 0.13 -1.74 5.93 -2.39 -0.01 -1.75 16 41 H 0.15 -0.12 8.06 -2.91 -0.02 -0.15 16 42 H 0.12 -0.56 7.96 -2.39 -0.02 -0.58 16 43 H 0.40 -5.21 8.70 -74.06 -0.64 -5.85 16 44 H -0.27 1.24 7.11 99.48 0.71 1.94 16 45 H -0.30 -0.29 7.11 99.48 0.71 0.41 16 46 H 0.18 -2.99 4.90 -2.91 -0.01 -3.00 16 47 H 0.19 -3.17 6.52 -2.91 -0.02 -3.18 16 48 H 0.12 -1.30 8.14 -2.39 -0.02 -1.32 16 49 H 0.11 -0.88 8.08 -2.39 -0.02 -0.90 16 Total: 0.00 -31.30 415.90 -3.99 -35.29 By element: Atomic # 1 Polarization: -22.77 SS G_CDS: -0.40 Total: -23.17 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 4.46 Total: 15.14 kcal Atomic # 7 Polarization: 2.24 SS G_CDS: -3.04 Total: -0.80 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -6.69 Total: -29.33 kcal Atomic # 14 Polarization: -6.36 SS G_CDS: 2.04 Total: -4.32 kcal Atomic # 16 Polarization: 8.08 SS G_CDS: -0.29 Total: 7.79 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.07 Total: -0.60 kcal Total: -31.30 -3.99 -35.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_2163008_14316444.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.775 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds