Wall clock time and date at job start Fri Mar 5 2021 23:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47009 * 2 1 4 4 C 1.52996 * 109.47454 * 239.99977 * 2 1 3 5 5 O 1.45199 * 109.47393 * 119.99687 * 2 1 3 6 6 C 1.34637 * 116.99885 * 60.00208 * 5 2 1 7 7 O 1.21514 * 120.00224 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00006 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00039 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.85078 * 23.80723 * 9 8 6 11 11 C 1.53784 * 113.61504 * 154.99904 * 9 8 6 12 12 C 1.53778 * 87.08530 * 89.19967 * 11 9 8 13 13 H 1.09004 * 113.61251 * 270.80416 * 12 11 9 14 14 S 1.81392 * 113.61579 * 139.97936 * 12 11 9 15 15 O 1.42103 * 110.54423 * 74.04820 * 14 12 11 16 16 O 1.42101 * 110.54341 * 297.29867 * 14 12 11 17 17 O 1.52201 * 104.45172 * 185.67434 * 14 12 11 18 18 C 1.35925 * 113.99934 * 284.64160 * 17 14 12 19 19 C 1.38809 * 120.05667 * 265.72164 * 18 17 14 20 20 Cl 1.73599 * 120.04118 * 359.95546 * 19 18 17 21 21 C 1.38260 * 119.92059 * 179.74703 * 19 18 17 22 22 C 1.38246 * 120.04084 * 0.48322 * 21 19 18 23 23 C 1.50706 * 119.93653 * 179.76668 * 22 21 19 24 24 O 1.42903 * 109.46583 * 119.72814 * 23 22 21 25 25 Si 1.86293 * 109.47480 * 359.72845 * 23 22 21 26 26 C 1.38270 * 120.12153 * 359.49725 * 22 21 19 27 27 C 1.38156 * 120.07544 * 0.26733 * 26 22 21 28 28 C 1.53786 * 87.16919 * 25.38934 * 12 11 9 29 29 H 1.08998 * 109.47283 * 300.00100 * 1 2 3 30 30 H 1.09000 * 109.47133 * 60.00477 * 1 2 3 31 31 H 1.09006 * 109.46898 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46824 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46783 * 299.99737 * 3 2 1 34 34 H 1.08998 * 109.47180 * 59.99837 * 3 2 1 35 35 H 1.09006 * 109.47068 * 299.99896 * 4 2 1 36 36 H 1.09000 * 109.47322 * 59.99661 * 4 2 1 37 37 H 1.08997 * 109.47837 * 179.97438 * 4 2 1 38 38 H 0.97004 * 120.00377 * 359.97438 * 8 6 5 39 39 H 1.09004 * 113.61324 * 334.65149 * 11 9 8 40 40 H 1.09005 * 113.68898 * 203.76684 * 11 9 8 41 41 H 1.08003 * 119.97967 * 180.22865 * 21 19 18 42 42 H 1.09004 * 109.47073 * 239.72172 * 23 22 21 43 43 H 0.96699 * 114.00145 * 299.99308 * 24 23 22 44 44 H 1.48494 * 110.00037 * 180.02562 * 25 23 22 45 45 H 1.48502 * 109.99905 * 301.31565 * 25 23 22 46 46 H 1.07998 * 119.96423 * 180.25626 * 26 22 21 47 47 H 1.07996 * 120.02291 * 179.97438 * 27 26 22 48 48 H 1.09003 * 113.61245 * 89.15724 * 28 12 11 49 49 H 1.08994 * 113.61597 * 220.05943 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5095 0.5041 8 7 2.0673 -2.6653 2.4172 9 6 1.6733 -4.0664 2.5838 10 1 1.4211 -4.5502 1.6402 11 6 2.6462 -4.8808 3.4527 12 6 1.8042 -4.4467 4.6640 13 1 2.1332 -3.5085 5.1108 14 16 1.5599 -5.7627 5.8883 15 8 2.7538 -5.9851 6.6263 16 8 0.8382 -6.8461 5.3187 17 8 0.5974 -5.1631 6.9035 18 6 1.1705 -4.2601 7.7424 19 6 1.6470 -4.6668 8.9811 20 17 1.5107 -6.3295 9.4615 21 6 2.2342 -3.7470 9.8301 22 6 2.3376 -2.4219 9.4499 23 6 2.9733 -1.4203 10.3794 24 8 4.1145 -0.8394 9.7450 25 14 3.5029 -2.2764 11.9469 26 6 1.8639 -2.0149 8.2163 27 6 1.2807 -2.9308 7.3621 28 6 0.6251 -4.2850 3.6900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 2.6270 -2.2364 3.0834 39 1 3.6612 -4.4834 3.4616 40 1 2.6133 -5.9532 3.2596 41 1 2.6086 -4.0632 10.7926 42 1 2.2529 -0.6379 10.6182 43 1 4.7985 -1.4789 9.5037 44 1 4.1308 -1.2992 12.8721 45 1 2.3301 -2.9118 12.5996 46 1 1.9498 -0.9799 7.9202 47 1 0.9106 -2.6119 6.3989 48 1 0.0374 -5.1939 3.5611 49 1 0.0107 -3.4072 3.8901 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_2163008_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:03:36 Heat of formation + Delta-G solvation = -153.614955 kcal Electronic energy + Delta-G solvation = -37412.001338 eV Core-core repulsion = 32268.469971 eV Total energy + Delta-G solvation = -5143.531368 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.098 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.41607 -41.96950 -40.42370 -40.00533 -38.48555 -37.98205 -37.88415 -37.38870 -37.21178 -35.36551 -34.01773 -32.60108 -32.00681 -28.36139 -28.29558 -27.40638 -27.18414 -26.98371 -24.54396 -23.90339 -23.53545 -21.90209 -21.29132 -20.87350 -19.72123 -19.45609 -19.02702 -18.74799 -18.42021 -17.67525 -17.44809 -17.19598 -16.82677 -16.76669 -16.47465 -16.12424 -15.85720 -15.69815 -15.51465 -15.38680 -15.26439 -14.84232 -14.67998 -14.50663 -14.37096 -14.24990 -14.06102 -13.90899 -13.78248 -13.72558 -13.48888 -13.34370 -13.32189 -13.14050 -12.92121 -12.86235 -12.84740 -12.69213 -12.54837 -12.46018 -12.35420 -12.15663 -12.07849 -12.01168 -11.98996 -11.41210 -11.37389 -11.13964 -10.59345 -10.31964 -10.30070 -9.98668 -5.02316 -1.24537 -0.32979 -0.20678 0.67827 0.91681 1.06510 1.24190 1.58941 1.69589 1.93630 2.06603 2.41063 2.61313 2.83601 2.98647 3.11438 3.24878 3.35113 3.44725 3.53779 3.58122 3.72367 3.74395 3.80174 3.87950 3.94816 3.95906 4.26364 4.32731 4.40216 4.41502 4.44856 4.49345 4.53893 4.62007 4.62093 4.65856 4.72291 4.75655 4.77725 4.82563 4.85844 4.88784 4.90194 5.05452 5.12527 5.26414 5.27968 5.36481 5.37767 5.57325 6.34839 6.75732 7.30741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.680 5.680 9 C 0.151 3.849 10 H 0.110 0.890 11 C -0.111 4.111 12 C -0.627 4.627 13 H 0.190 0.810 14 S 2.584 3.416 15 O -0.962 6.962 16 O -0.958 6.958 17 O -0.665 6.665 18 C 0.061 3.939 19 C -0.033 4.033 20 Cl -0.057 7.057 21 C -0.097 4.097 22 C -0.086 4.086 23 C -0.056 4.056 24 O -0.543 6.543 25 Si 0.741 3.259 26 C -0.058 4.058 27 C -0.115 4.115 28 C -0.127 4.127 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.421 0.579 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.159 0.841 42 H 0.131 0.869 43 H 0.399 0.601 44 H -0.291 1.291 45 H -0.287 1.287 46 H 0.179 0.821 47 H 0.185 0.815 48 H 0.112 0.888 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 7.828 -0.672 8.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.340 5.340 9 C 0.044 3.956 10 H 0.128 0.872 11 C -0.150 4.150 12 C -0.737 4.737 13 H 0.207 0.793 14 S 2.685 3.315 15 O -0.960 6.960 16 O -0.956 6.956 17 O -0.624 6.624 18 C 0.019 3.981 19 C -0.062 4.062 20 Cl -0.028 7.028 21 C -0.116 4.116 22 C -0.087 4.087 23 C -0.168 4.168 24 O -0.351 6.351 25 Si 0.648 3.352 26 C -0.076 4.076 27 C -0.134 4.134 28 C -0.167 4.167 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.259 0.741 39 H 0.144 0.856 40 H 0.135 0.865 41 H 0.176 0.824 42 H 0.149 0.851 43 H 0.250 0.750 44 H -0.219 1.219 45 H -0.213 1.213 46 H 0.197 0.803 47 H 0.202 0.798 48 H 0.130 0.870 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.225 7.240 0.215 7.929 hybrid contribution -0.589 -0.009 -0.099 0.597 sum 2.636 7.231 0.116 7.698 Atomic orbital electron populations 1.22485 0.94032 1.03784 1.03541 1.22330 0.94406 0.92503 0.81432 1.21894 1.02509 0.90889 1.04241 1.22489 1.01716 1.02310 0.97390 1.86309 1.71445 1.23034 1.47171 1.18288 0.78529 0.80856 0.82225 1.90936 1.41939 1.70866 1.44301 1.44200 1.55093 1.11410 1.23304 1.21615 0.94852 0.79760 0.99341 0.87186 1.23170 1.00412 1.02438 0.89028 1.32265 1.09024 1.19793 1.12659 0.79303 1.05777 0.73118 0.76894 0.75761 1.93642 1.49769 1.85217 1.67361 1.93613 1.72055 1.50922 1.79047 1.85726 1.59555 1.62257 1.54831 1.18135 1.01589 0.88586 0.89828 1.21236 1.02359 0.87478 0.95166 1.98424 1.96475 1.16631 1.91269 1.21096 0.98641 0.92013 0.99801 1.20662 0.98132 0.93044 0.96881 1.24929 0.90617 0.99099 1.02146 1.86512 1.29289 1.38378 1.80953 0.93951 0.83943 0.82001 0.75335 1.21367 0.93371 1.01473 0.91354 1.21806 0.99308 0.88565 1.03742 1.23370 0.94739 1.05843 0.92704 0.91725 0.89730 0.91643 0.91114 0.88570 0.90999 0.91662 0.89691 0.91848 0.74091 0.85629 0.86528 0.82407 0.85133 0.75044 1.21860 1.21345 0.80328 0.79821 0.87006 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.09 8.37 71.98 0.60 0.52 16 2 C 0.13 -0.01 1.13 -10.79 -0.01 -0.03 16 3 C -0.14 0.65 8.85 71.98 0.64 1.29 16 4 C -0.18 -0.15 8.37 71.98 0.60 0.45 16 5 O -0.37 -0.40 9.94 -55.46 -0.55 -0.95 16 6 C 0.65 1.30 8.06 129.79 1.05 2.35 16 7 O -0.59 -4.79 11.48 19.80 0.23 -4.56 16 8 N -0.68 3.62 5.27 -567.33 -2.99 0.63 16 9 C 0.15 -0.80 4.33 45.58 0.20 -0.60 16 10 H 0.11 -0.22 7.46 -2.39 -0.02 -0.24 16 11 C -0.11 0.92 7.42 31.12 0.23 1.15 16 12 C -0.63 4.71 3.64 31.12 0.11 4.82 16 13 H 0.19 -2.78 6.09 -2.38 -0.01 -2.79 16 14 S 2.58 7.78 5.09 -56.49 -0.29 7.49 16 15 O -0.96 -6.61 15.84 -118.57 -1.88 -8.49 16 16 O -0.96 -10.25 17.43 -118.57 -2.07 -12.32 16 17 O -0.66 -2.40 9.52 -61.79 -0.59 -2.99 16 18 C 0.06 0.04 4.72 22.52 0.11 0.14 16 19 C -0.03 -0.09 5.75 22.41 0.13 0.03 16 20 Cl -0.06 -0.42 27.85 -2.72 -0.08 -0.50 16 21 C -0.10 0.25 8.45 22.28 0.19 0.44 16 22 C -0.09 0.58 5.39 -19.85 -0.11 0.47 16 23 C -0.06 0.44 2.82 71.24 0.20 0.64 16 24 O -0.54 4.36 12.77 -148.98 -1.90 2.46 16 25 Si 0.74 -3.98 29.78 68.60 2.04 -1.93 16 26 C -0.06 0.54 9.60 22.26 0.21 0.76 16 27 C -0.11 0.88 8.50 22.36 0.19 1.07 16 28 C -0.13 0.76 7.46 31.18 0.23 0.99 16 29 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.06 0.37 5.88 -2.38 -0.01 0.35 16 32 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.06 0.39 5.88 -2.38 -0.01 0.37 16 36 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.42 -4.68 8.81 -92.71 -0.82 -5.50 16 39 H 0.13 -1.56 8.14 -2.39 -0.02 -1.58 16 40 H 0.12 -0.97 8.10 -2.38 -0.02 -0.99 16 41 H 0.16 -0.81 4.87 -2.91 -0.01 -0.82 16 42 H 0.13 -1.12 7.96 -2.39 -0.02 -1.14 16 43 H 0.40 -6.08 8.70 -74.06 -0.64 -6.73 16 44 H -0.29 -0.62 7.11 99.48 0.71 0.09 16 45 H -0.29 -0.10 7.11 99.48 0.71 0.61 16 46 H 0.18 -2.59 8.06 -2.91 -0.02 -2.61 16 47 H 0.18 -2.72 6.90 -2.91 -0.02 -2.74 16 48 H 0.11 -0.45 7.55 -2.39 -0.02 -0.47 16 49 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 Total: 0.00 -29.81 421.58 -3.89 -33.71 By element: Atomic # 1 Polarization: -26.66 SS G_CDS: -0.40 Total: -27.06 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 4.57 Total: 14.50 kcal Atomic # 7 Polarization: 3.62 SS G_CDS: -2.99 Total: 0.63 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -6.76 Total: -26.84 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 2.04 Total: -1.93 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -0.29 Total: 7.49 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -29.81 -3.89 -33.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_2163008_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.908 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds