Wall clock time and date at job start Sat Mar 6 2021 00:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00206 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.84865 * 23.80487 * 9 8 6 11 11 C 1.53779 * 113.61241 * 155.00040 * 9 8 6 12 12 C 1.53782 * 87.07952 * 139.98216 * 11 9 8 13 13 H 1.08999 * 113.61337 * 89.11699 * 12 11 9 14 14 S 1.81404 * 113.61639 * 220.01731 * 12 11 9 15 15 O 1.42100 * 110.54296 * 291.62797 * 14 12 11 16 16 O 1.42100 * 110.53955 * 68.37782 * 14 12 11 17 17 O 1.52195 * 104.44878 * 180.02562 * 14 12 11 18 18 C 1.35953 * 114.00464 * 75.00068 * 17 14 12 19 19 C 1.38915 * 120.06259 * 89.99604 * 18 17 14 20 20 F 1.35102 * 120.04206 * 0.02562 * 19 18 17 21 21 C 1.38325 * 119.90556 * 179.97438 * 19 18 17 22 22 C 1.38259 * 120.03146 * 0.02562 * 21 19 18 23 23 C 1.50695 * 119.93850 * 179.97438 * 22 21 19 24 24 O 1.42906 * 109.47013 * 65.00352 * 23 22 21 25 25 Si 1.86302 * 109.47193 * 185.00123 * 23 22 21 26 26 C 1.38262 * 120.12232 * 359.97438 * 22 21 19 27 27 C 1.38177 * 120.09972 * 359.74590 * 26 22 21 28 28 C 1.53782 * 113.61440 * 252.50147 * 9 8 6 29 29 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 30 30 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 34 34 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 35 35 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 36 36 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 37 37 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 38 38 H 0.97003 * 119.99726 * 0.02562 * 8 6 5 39 39 H 1.08999 * 113.61783 * 254.52636 * 11 9 8 40 40 H 1.08995 * 113.61541 * 25.35465 * 11 9 8 41 41 H 1.08004 * 119.98778 * 180.02562 * 21 19 18 42 42 H 1.08995 * 109.47595 * 305.00250 * 23 22 21 43 43 H 0.96702 * 113.99631 * 180.02562 * 24 23 22 44 44 H 1.48500 * 109.99993 * 300.00066 * 25 23 22 45 45 H 1.48496 * 109.99696 * 61.31868 * 25 23 22 46 46 H 1.08006 * 119.95033 * 180.02562 * 26 22 21 47 47 H 1.08002 * 120.02245 * 180.25818 * 27 26 22 48 48 H 1.08997 * 113.61709 * 334.56072 * 28 9 8 49 49 H 1.08994 * 113.61835 * 105.47378 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6741 -4.0668 2.5832 10 1 1.4210 -4.5503 1.6396 11 6 2.6476 -4.8815 3.4512 12 6 1.4103 -5.5542 4.0688 13 1 1.0840 -6.4449 3.5321 14 16 1.5438 -5.8176 5.8587 15 8 2.5308 -6.7986 6.1461 16 8 1.5228 -4.5753 6.5483 17 8 0.2304 -6.4833 6.2435 18 6 0.1464 -7.7911 5.8817 19 6 0.5768 -8.7833 6.7534 20 9 1.0791 -8.4501 7.9625 21 6 0.4894 -10.1130 6.3822 22 6 -0.0252 -10.4536 5.1450 23 6 -0.1190 -11.9027 4.7424 24 8 -1.0444 -12.5759 5.5983 25 14 -0.7060 -12.0205 2.9783 26 6 -0.4540 -9.4670 4.2763 27 6 -0.3744 -8.1374 4.6441 28 6 0.6285 -4.2854 3.6894 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.6277 -2.2368 3.0829 39 1 3.2760 -5.5643 2.8793 40 1 3.2149 -4.2753 4.1574 41 1 0.8232 -10.8855 7.0591 42 1 0.8624 -12.3686 4.8306 43 1 -1.1549 -13.5152 5.3968 44 1 -2.0434 -11.3889 2.8448 45 1 0.2640 -11.3517 2.0745 46 1 -0.8559 -9.7362 3.3107 47 1 -0.7135 -7.3680 3.9663 48 1 0.6428 -3.5165 4.4619 49 1 -0.3732 -4.4870 3.3099 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_7834718_14316444.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:13:41 Heat of formation + Delta-G solvation = -194.045915 kcal Electronic energy + Delta-G solvation = -37192.337736 eV Core-core repulsion = 31937.398967 eV Total energy + Delta-G solvation = -5254.938769 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.40280 -42.34360 -41.97144 -40.42221 -40.00830 -38.62999 -37.96633 -37.54728 -37.39302 -35.45118 -34.23218 -32.59874 -32.21799 -28.39021 -28.33248 -27.42771 -27.22149 -27.06969 -24.70107 -23.83676 -23.44408 -22.06504 -21.59113 -20.97007 -19.84311 -19.33951 -19.29402 -18.97313 -18.56155 -18.29282 -18.14860 -17.47399 -17.26668 -17.01247 -16.96953 -16.67749 -16.38519 -16.04855 -15.68131 -15.55219 -15.51608 -15.40017 -15.10707 -14.51519 -14.47915 -14.39384 -14.27572 -14.06894 -14.01035 -13.90616 -13.63228 -13.57041 -13.47171 -13.39000 -13.31463 -13.16928 -12.96557 -12.92793 -12.89825 -12.62851 -12.58745 -12.44273 -12.33109 -12.12848 -11.96842 -11.52870 -11.42877 -11.16719 -10.54714 -10.33845 -10.32079 -10.13625 -4.86636 -1.38775 -0.50276 -0.35194 0.66148 1.09763 1.28552 1.64627 1.71491 1.87759 1.97931 2.28077 2.47187 2.57959 2.77507 2.93928 3.10177 3.11066 3.23020 3.36452 3.48744 3.53378 3.62359 3.70983 3.75736 3.76931 3.91601 3.92533 4.14045 4.23424 4.29737 4.35624 4.41281 4.48261 4.49478 4.55282 4.58911 4.59191 4.60203 4.63773 4.71466 4.74273 4.79531 4.84956 4.87302 4.89074 5.08391 5.21562 5.24720 5.29284 5.32353 5.52404 6.28294 6.88537 7.24429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.588 6.588 8 N -0.696 5.696 9 C 0.156 3.844 10 H 0.135 0.865 11 C -0.114 4.114 12 C -0.620 4.620 13 H 0.192 0.808 14 S 2.587 3.413 15 O -0.973 6.973 16 O -0.953 6.953 17 O -0.661 6.661 18 C 0.012 3.988 19 C 0.104 3.896 20 F -0.135 7.135 21 C -0.115 4.115 22 C -0.033 4.033 23 C -0.092 4.092 24 O -0.563 6.563 25 Si 0.773 3.227 26 C -0.119 4.119 27 C -0.085 4.085 28 C -0.131 4.131 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.418 0.582 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.107 0.893 43 H 0.408 0.592 44 H -0.284 1.284 45 H -0.272 1.272 46 H 0.161 0.839 47 H 0.194 0.806 48 H 0.104 0.896 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -5.767 -7.815 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.478 6.478 8 N -0.356 5.356 9 C 0.051 3.949 10 H 0.152 0.848 11 C -0.153 4.153 12 C -0.732 4.732 13 H 0.209 0.791 14 S 2.687 3.313 15 O -0.971 6.971 16 O -0.951 6.951 17 O -0.620 6.620 18 C -0.030 4.030 19 C 0.082 3.918 20 F -0.113 7.113 21 C -0.133 4.133 22 C -0.034 4.034 23 C -0.200 4.200 24 O -0.374 6.374 25 Si 0.676 3.324 26 C -0.137 4.137 27 C -0.104 4.104 28 C -0.171 4.171 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.185 0.815 42 H 0.125 0.875 43 H 0.261 0.739 44 H -0.211 1.211 45 H -0.199 1.199 46 H 0.178 0.822 47 H 0.211 0.789 48 H 0.123 0.877 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.782 -4.783 -7.850 9.225 hybrid contribution 0.446 0.887 1.095 1.479 sum -0.335 -3.896 -6.754 7.804 Atomic orbital electron populations 1.22481 0.93948 1.03859 1.03479 1.22373 0.94521 0.92533 0.81515 1.21901 1.02468 0.91037 1.04207 1.22473 1.01648 1.02350 0.97195 1.86327 1.71491 1.23338 1.47360 1.18346 0.78533 0.80805 0.82272 1.90902 1.41894 1.70842 1.44185 1.44793 1.55191 1.12227 1.23348 1.22486 0.94478 0.78757 0.99221 0.84754 1.23247 0.94109 0.98636 0.99331 1.31946 1.09310 1.09528 1.22375 0.79102 1.05680 0.72704 0.73848 0.79041 1.93628 1.60427 1.59137 1.83918 1.93611 1.84601 1.45244 1.71668 1.85714 1.63208 1.29815 1.83271 1.18358 1.10275 0.77490 0.96886 1.18230 0.97850 0.94092 0.81587 1.91534 1.84685 1.93295 1.41788 1.21234 1.00633 0.93104 0.98347 1.19898 0.94481 0.96398 0.92648 1.25040 0.98686 0.88842 1.07458 1.86443 1.63258 1.29150 1.58549 0.93713 0.77224 0.89692 0.71765 1.21192 1.00069 0.91565 1.00870 1.21581 0.96469 0.99059 0.93311 1.23462 1.01018 0.92669 0.99915 0.92110 0.89452 0.91461 0.91199 0.88268 0.91342 0.91470 0.89475 0.91948 0.74468 0.85435 0.87421 0.81511 0.87528 0.73948 1.21060 1.19857 0.82238 0.78926 0.87749 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.41 8.37 71.98 0.60 0.19 16 2 C 0.13 0.27 1.13 -10.79 -0.01 0.26 16 3 C -0.14 0.32 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.34 8.37 71.98 0.60 0.27 16 5 O -0.37 -1.73 9.94 -55.45 -0.55 -2.28 16 6 C 0.65 3.14 8.06 129.79 1.05 4.19 16 7 O -0.59 -5.25 11.48 19.80 0.23 -5.02 16 8 N -0.70 0.75 5.36 -567.61 -3.04 -2.29 16 9 C 0.16 -0.64 4.24 45.52 0.19 -0.45 16 10 H 0.13 -0.55 7.46 -2.39 -0.02 -0.57 16 11 C -0.11 0.74 7.42 31.12 0.23 0.97 16 12 C -0.62 3.09 4.03 31.12 0.13 3.22 16 13 H 0.19 -2.20 6.13 -2.39 -0.01 -2.21 16 14 S 2.59 15.26 5.14 -56.49 -0.29 14.97 16 15 O -0.97 -10.90 15.95 -118.57 -1.89 -12.79 16 16 O -0.95 -11.82 17.27 -118.57 -2.05 -13.87 16 17 O -0.66 -4.74 9.92 -62.12 -0.62 -5.36 16 18 C 0.01 0.07 4.80 22.53 0.11 0.17 16 19 C 0.10 0.87 6.48 22.45 0.15 1.01 16 20 F -0.13 -1.81 16.73 44.97 0.75 -1.06 16 21 C -0.11 -0.34 9.66 22.30 0.22 -0.12 16 22 C -0.03 0.03 5.38 -19.86 -0.11 -0.08 16 23 C -0.09 0.61 2.79 71.23 0.20 0.81 16 24 O -0.56 3.04 12.81 -148.98 -1.91 1.13 16 25 Si 0.77 -7.05 29.85 68.60 2.05 -5.00 16 26 C -0.12 0.32 8.66 22.26 0.19 0.52 16 27 C -0.08 0.21 8.51 22.36 0.19 0.40 16 28 C -0.13 0.57 7.44 31.12 0.23 0.80 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.07 0.46 5.88 -2.38 -0.01 0.44 16 32 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.07 0.43 5.88 -2.38 -0.01 0.42 16 36 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.42 -1.89 8.84 -92.71 -0.82 -2.71 16 39 H 0.13 -1.31 8.14 -2.39 -0.02 -1.33 16 40 H 0.11 -0.79 8.08 -2.39 -0.02 -0.81 16 41 H 0.17 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.11 -1.16 7.96 -2.39 -0.02 -1.18 16 43 H 0.41 -6.38 8.74 -74.06 -0.65 -7.03 16 44 H -0.28 0.79 7.05 99.48 0.70 1.49 16 45 H -0.27 1.41 7.11 99.48 0.71 2.12 16 46 H 0.16 -1.05 4.86 -2.91 -0.01 -1.07 16 47 H 0.19 -2.12 7.28 -2.91 -0.02 -2.14 16 48 H 0.10 -0.22 7.43 -2.39 -0.02 -0.24 16 49 H 0.11 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: 0.00 -32.05 412.65 -3.13 -35.18 By element: Atomic # 1 Polarization: -16.30 SS G_CDS: -0.41 Total: -16.71 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 4.60 Total: 13.10 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -3.04 Total: -2.29 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -6.79 Total: -38.19 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.75 Total: -1.06 kcal Atomic # 14 Polarization: -7.05 SS G_CDS: 2.05 Total: -5.00 kcal Atomic # 16 Polarization: 15.26 SS G_CDS: -0.29 Total: 14.97 kcal Total: -32.05 -3.13 -35.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_7834718_14316444.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.871 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds