Wall clock time and date at job start Sat Mar 6 2021 00:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 C 1.53000 * 109.46804 * 240.00349 * 2 1 3 5 5 O 1.45199 * 109.47316 * 120.00386 * 2 1 3 6 6 C 1.34644 * 116.99999 * 59.99640 * 5 2 1 7 7 O 1.21514 * 119.99948 * 0.02562 * 6 5 2 8 8 N 1.34769 * 119.99842 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00019 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.90584 * 23.75829 * 9 8 6 11 11 C 1.53785 * 113.61120 * 155.00105 * 9 8 6 12 12 C 1.53778 * 87.16975 * 89.16494 * 11 9 8 13 13 H 1.09009 * 113.61366 * 270.83665 * 12 11 9 14 14 S 1.81403 * 113.61515 * 139.93816 * 12 11 9 15 15 O 1.42103 * 110.54070 * 297.03838 * 14 12 11 16 16 O 1.42098 * 110.54418 * 73.79208 * 14 12 11 17 17 O 1.52204 * 104.45085 * 185.41416 * 14 12 11 18 18 C 1.35960 * 113.99963 * 285.34191 * 17 14 12 19 19 C 1.38905 * 120.05952 * 268.52995 * 18 17 14 20 20 F 1.35096 * 120.04875 * 0.02562 * 19 18 17 21 21 C 1.38335 * 119.90232 * 179.77492 * 19 18 17 22 22 C 1.38258 * 120.02882 * 0.47204 * 21 19 18 23 23 C 1.50703 * 119.93484 * 179.76815 * 22 21 19 24 24 O 1.42899 * 109.47165 * 245.02738 * 23 22 21 25 25 Si 1.86291 * 109.47079 * 5.03106 * 23 22 21 26 26 C 1.38258 * 120.12742 * 359.80137 * 22 21 19 27 27 C 1.38183 * 120.09562 * 359.95109 * 26 22 21 28 28 C 1.53773 * 87.08493 * 25.38869 * 12 11 9 29 29 H 1.08994 * 109.47071 * 299.99563 * 1 2 3 30 30 H 1.09002 * 109.47069 * 59.99952 * 1 2 3 31 31 H 1.09003 * 109.46802 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46778 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46860 * 300.00582 * 3 2 1 34 34 H 1.09001 * 109.46565 * 60.00531 * 3 2 1 35 35 H 1.09001 * 109.47632 * 299.99695 * 4 2 1 36 36 H 1.09002 * 109.47553 * 59.99995 * 4 2 1 37 37 H 1.09009 * 109.47198 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00147 * 0.02562 * 8 6 5 39 39 H 1.08992 * 113.61967 * 334.57206 * 11 9 8 40 40 H 1.08997 * 113.61259 * 203.75112 * 11 9 8 41 41 H 1.07994 * 119.98474 * 180.22933 * 21 19 18 42 42 H 1.09001 * 109.46739 * 125.02900 * 23 22 21 43 43 H 0.96701 * 113.99734 * 180.02562 * 24 23 22 44 44 H 1.48501 * 110.00109 * 299.99518 * 25 23 22 45 45 H 1.48500 * 110.00262 * 61.31611 * 25 23 22 46 46 H 1.07996 * 119.95549 * 179.97438 * 26 22 21 47 47 H 1.07991 * 120.01746 * 180.02562 * 27 26 22 48 48 H 1.08998 * 113.61940 * 89.11782 * 28 12 11 49 49 H 1.09004 * 113.61654 * 220.02252 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0681 -2.6658 2.4164 9 6 1.6740 -4.0670 2.5830 10 1 1.4198 -4.5511 1.6400 11 6 2.6476 -4.8817 3.4509 12 6 1.8086 -4.4482 4.6645 13 1 2.1386 -3.5101 5.1109 14 16 1.5659 -5.7654 5.8879 15 8 0.8368 -6.8450 5.3203 16 8 2.7629 -5.9937 6.6189 17 8 0.6113 -5.1638 6.9094 18 6 1.1893 -4.2532 7.7372 19 6 1.7328 -4.6607 8.9488 20 9 1.6884 -5.9628 9.3063 21 6 2.3243 -3.7322 9.7865 22 6 2.3654 -2.3990 9.4223 23 6 3.0056 -1.3885 10.3388 24 8 2.0130 -0.4726 10.8055 25 14 3.7729 -2.2663 11.7917 26 6 1.8197 -1.9912 8.2192 27 6 1.2322 -2.9151 7.3761 28 6 0.6287 -4.2861 3.6917 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2496 38 1 2.6278 -2.2370 3.0826 39 1 3.6629 -4.4853 3.4579 40 1 2.6132 -5.9537 3.2568 41 1 2.7506 -4.0481 10.7271 42 1 3.7769 -0.8426 9.7954 43 1 2.3549 0.2078 11.4015 44 1 2.7317 -3.0145 12.5409 45 1 4.8291 -3.1986 11.3220 46 1 1.8530 -0.9491 7.9376 47 1 0.8068 -2.5952 6.4365 48 1 0.0411 -5.1950 3.5626 49 1 0.0141 -3.4086 3.8932 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_7834718_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:17:32 Heat of formation + Delta-G solvation = -192.964062 kcal Electronic energy + Delta-G solvation = -37671.625633 eV Core-core repulsion = 32416.733777 eV Total energy + Delta-G solvation = -5254.891856 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.48359 -42.32428 -41.97795 -40.45617 -40.00310 -38.61434 -37.89462 -37.52543 -37.36953 -35.37018 -34.03089 -32.80569 -31.99179 -28.35920 -28.29126 -27.46498 -27.25420 -27.04341 -24.71090 -23.94035 -23.52943 -22.05062 -21.31857 -20.94257 -19.80382 -19.55059 -19.10223 -19.01230 -18.48352 -18.40374 -17.95824 -17.58224 -17.20018 -17.03062 -16.90006 -16.69195 -16.16779 -15.99561 -15.73483 -15.64767 -15.45410 -15.31326 -15.13523 -14.67551 -14.45626 -14.35447 -14.29827 -14.16917 -14.06881 -13.93499 -13.64799 -13.62636 -13.53958 -13.40607 -13.34036 -13.14215 -12.92856 -12.91638 -12.85839 -12.55229 -12.39198 -12.36568 -12.19489 -12.07622 -12.03312 -11.46855 -11.39100 -11.14249 -10.57703 -10.36986 -10.33443 -10.08016 -5.00882 -1.35727 -0.48888 -0.35946 0.68471 1.05363 1.23533 1.59526 1.69035 1.89637 1.94342 2.30821 2.51396 2.55268 2.78039 2.94190 2.99613 3.09427 3.30258 3.41305 3.54310 3.61345 3.66375 3.74586 3.76035 3.80379 3.83612 3.95101 4.28005 4.30194 4.36323 4.37617 4.41236 4.47922 4.49942 4.55274 4.61304 4.62262 4.68904 4.72640 4.76842 4.78044 4.82400 4.89234 4.89848 4.93901 5.12387 5.25942 5.28178 5.33631 5.36018 5.57025 6.34207 6.91117 7.30221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.364 6.364 6 C 0.648 3.352 7 O -0.590 6.590 8 N -0.680 5.680 9 C 0.153 3.847 10 H 0.112 0.888 11 C -0.112 4.112 12 C -0.620 4.620 13 H 0.193 0.807 14 S 2.582 3.418 15 O -0.957 6.957 16 O -0.979 6.979 17 O -0.663 6.663 18 C 0.017 3.983 19 C 0.099 3.901 20 F -0.140 7.140 21 C -0.162 4.162 22 C -0.036 4.036 23 C -0.065 4.065 24 O -0.556 6.556 25 Si 0.752 3.248 26 C -0.066 4.066 27 C -0.089 4.089 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.422 0.578 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.410 0.590 44 H -0.303 1.303 45 H -0.291 1.291 46 H 0.196 0.804 47 H 0.198 0.802 48 H 0.112 0.888 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 13.917 0.337 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.340 5.340 9 C 0.046 3.954 10 H 0.130 0.870 11 C -0.152 4.152 12 C -0.732 4.732 13 H 0.210 0.790 14 S 2.683 3.317 15 O -0.955 6.955 16 O -0.978 6.978 17 O -0.622 6.622 18 C -0.026 4.026 19 C 0.077 3.923 20 F -0.119 7.119 21 C -0.181 4.181 22 C -0.037 4.037 23 C -0.176 4.176 24 O -0.366 6.366 25 Si 0.660 3.340 26 C -0.083 4.083 27 C -0.108 4.108 28 C -0.165 4.165 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.263 0.737 44 H -0.232 1.232 45 H -0.219 1.219 46 H 0.213 0.787 47 H 0.215 0.785 48 H 0.131 0.869 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.147 11.816 0.281 12.526 hybrid contribution -0.214 -0.955 -0.102 0.984 sum 3.933 10.861 0.179 11.553 Atomic orbital electron populations 1.22486 0.94011 1.03773 1.03579 1.22333 0.94419 0.92516 0.81388 1.21893 1.02493 0.90837 1.04284 1.22495 1.01698 1.02307 0.97447 1.86309 1.71418 1.22983 1.47168 1.18280 0.78510 0.80877 0.82187 1.90939 1.41983 1.70875 1.44237 1.44187 1.55087 1.11327 1.23411 1.21586 0.94661 0.79806 0.99312 0.87003 1.23190 1.00499 1.02534 0.88929 1.32210 1.09485 1.19300 1.12167 0.78988 1.05849 0.72805 0.77215 0.75846 1.93610 1.71560 1.51356 1.78949 1.93621 1.50218 1.85559 1.68363 1.85719 1.59558 1.61808 1.55095 1.18433 1.03964 0.89363 0.90827 1.18045 1.00654 0.78893 0.94661 1.91513 1.94377 1.34276 1.91700 1.21068 1.02807 0.94009 1.00186 1.19845 0.96159 0.91485 0.96177 1.24529 0.94865 0.95201 1.03022 1.86427 1.35588 1.45367 1.69266 0.94468 0.77315 0.82296 0.79898 1.21505 0.93823 1.02053 0.90947 1.21887 0.97702 0.87603 1.03597 1.23395 0.94640 1.06076 0.92390 0.91624 0.89759 0.91686 0.91127 0.88594 0.90892 0.91703 0.89701 0.91877 0.74046 0.85651 0.86564 0.84639 0.85447 0.73695 1.23178 1.21875 0.78719 0.78535 0.86938 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.02 8.37 71.98 0.60 0.58 16 2 C 0.13 -0.06 1.13 -10.79 -0.01 -0.08 16 3 C -0.14 0.72 8.85 71.98 0.64 1.36 16 4 C -0.18 -0.11 8.37 71.98 0.60 0.49 16 5 O -0.36 -0.23 9.94 -55.53 -0.55 -0.78 16 6 C 0.65 1.10 8.06 129.79 1.05 2.15 16 7 O -0.59 -4.67 11.48 19.79 0.23 -4.44 16 8 N -0.68 3.77 5.27 -567.32 -2.99 0.78 16 9 C 0.15 -0.80 4.33 45.58 0.20 -0.60 16 10 H 0.11 -0.23 7.46 -2.39 -0.02 -0.25 16 11 C -0.11 0.85 7.41 31.12 0.23 1.08 16 12 C -0.62 4.05 3.71 31.12 0.12 4.16 16 13 H 0.19 -2.73 6.32 -2.38 -0.02 -2.74 16 14 S 2.58 14.87 5.09 -56.49 -0.29 14.58 16 15 O -0.96 -12.34 17.42 -118.57 -2.07 -14.41 16 16 O -0.98 -11.54 16.12 -118.57 -1.91 -13.45 16 17 O -0.66 -4.62 9.92 -62.19 -0.62 -5.24 16 18 C 0.02 0.08 4.78 22.53 0.11 0.19 16 19 C 0.10 0.98 6.53 22.45 0.15 1.13 16 20 F -0.14 -2.24 16.85 44.97 0.76 -1.48 16 21 C -0.16 -0.86 8.64 22.30 0.19 -0.66 16 22 C -0.04 0.07 5.38 -19.85 -0.11 -0.03 16 23 C -0.06 0.53 2.79 71.24 0.20 0.73 16 24 O -0.56 4.70 12.81 -148.98 -1.91 2.79 16 25 Si 0.75 -3.63 29.85 68.60 2.05 -1.59 16 26 C -0.07 0.48 9.68 22.26 0.22 0.70 16 27 C -0.09 0.50 8.47 22.36 0.19 0.68 16 28 C -0.13 0.73 7.45 31.18 0.23 0.97 16 29 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.06 0.35 5.88 -2.39 -0.01 0.33 16 32 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.06 0.38 5.88 -2.39 -0.01 0.37 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 38 H 0.42 -4.83 8.81 -92.71 -0.82 -5.65 16 39 H 0.13 -1.46 8.14 -2.39 -0.02 -1.48 16 40 H 0.12 -0.86 8.10 -2.39 -0.02 -0.88 16 41 H 0.14 0.79 4.86 -2.91 -0.01 0.78 16 42 H 0.13 -1.94 7.96 -2.39 -0.02 -1.96 16 43 H 0.41 -7.54 8.74 -74.06 -0.65 -8.19 16 44 H -0.30 -1.35 7.05 99.48 0.70 -0.65 16 45 H -0.29 -0.61 7.11 99.48 0.71 0.09 16 46 H 0.20 -2.97 8.06 -2.91 -0.02 -3.00 16 47 H 0.20 -2.87 7.24 -2.92 -0.02 -2.89 16 48 H 0.11 -0.43 7.54 -2.39 -0.02 -0.45 16 49 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 Total: 0.00 -37.00 413.00 -3.11 -40.12 By element: Atomic # 1 Polarization: -29.31 SS G_CDS: -0.41 Total: -29.72 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 4.60 Total: 12.83 kcal Atomic # 7 Polarization: 3.77 SS G_CDS: -2.99 Total: 0.78 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -6.83 Total: -35.52 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.76 Total: -1.48 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.05 Total: -1.59 kcal Atomic # 16 Polarization: 14.87 SS G_CDS: -0.29 Total: 14.58 kcal Total: -37.00 -3.11 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_7834718_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.849 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds