Wall clock time and date at job start Sat Mar 6 2021 00:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47426 * 2 1 4 4 C 1.53001 * 109.47231 * 239.99447 * 2 1 3 5 5 O 1.45206 * 109.46965 * 119.99755 * 2 1 3 6 6 C 1.34638 * 116.99749 * 59.99847 * 5 2 1 7 7 O 1.21505 * 120.00379 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99542 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99712 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91190 * 336.25239 * 9 8 6 11 11 C 1.53788 * 113.61289 * 107.50563 * 9 8 6 12 12 C 1.53779 * 87.08270 * 89.11354 * 11 9 8 13 13 H 1.09003 * 113.69216 * 270.87180 * 12 11 9 14 14 S 1.81400 * 113.61088 * 139.97977 * 12 11 9 15 15 O 1.42097 * 110.54482 * 330.87778 * 14 12 11 16 16 O 1.42099 * 110.54158 * 194.12483 * 14 12 11 17 17 O 1.52206 * 104.44808 * 82.50563 * 14 12 11 18 18 C 1.35897 * 113.99911 * 74.99908 * 17 14 12 19 19 C 1.38738 * 120.05494 * 270.27325 * 18 17 14 20 20 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 21 21 C 1.38274 * 120.05552 * 359.44290 * 20 19 18 22 22 C 1.50696 * 119.94301 * 180.27916 * 21 20 19 23 23 O 1.42900 * 109.47297 * 300.00018 * 22 21 20 24 24 Si 1.86297 * 109.46975 * 180.02562 * 22 21 20 25 25 C 1.38261 * 120.10990 * 0.30244 * 21 20 19 26 26 C 1.38149 * 120.05703 * 359.97438 * 25 21 20 27 27 C 1.53778 * 87.08128 * 25.43383 * 12 11 9 28 28 H 1.09000 * 109.47135 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.46736 * 60.00197 * 1 2 3 30 30 H 1.08993 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47474 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47053 * 300.00193 * 3 2 1 33 33 H 1.08995 * 109.47134 * 59.99275 * 3 2 1 34 34 H 1.08993 * 109.47184 * 300.00440 * 4 2 1 35 35 H 1.09002 * 109.46971 * 60.00499 * 4 2 1 36 36 H 1.09005 * 109.46888 * 180.02562 * 4 2 1 37 37 H 0.96999 * 120.00140 * 0.02562 * 8 6 5 38 38 H 1.09001 * 113.60898 * 334.56294 * 11 9 8 39 39 H 1.09002 * 113.61316 * 203.66712 * 11 9 8 40 40 H 1.07998 * 120.02566 * 359.97438 * 19 18 17 41 41 H 1.08002 * 119.97550 * 179.72852 * 20 19 18 42 42 H 1.08998 * 109.47091 * 60.00335 * 22 21 20 43 43 H 0.96697 * 113.99797 * 300.00534 * 23 22 21 44 44 H 1.48504 * 109.99942 * 58.68038 * 24 22 21 45 45 H 1.48505 * 110.00265 * 180.02562 * 24 22 21 46 46 H 1.07996 * 119.97484 * 179.97438 * 25 21 20 47 47 H 1.07998 * 120.02878 * 180.02562 * 26 25 21 48 48 H 1.08998 * 113.61701 * 89.11438 * 27 12 11 49 49 H 1.09001 * 113.61660 * 219.93713 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0671 -2.6653 2.4173 9 6 1.6729 -4.0664 2.5839 10 1 0.7592 -4.3171 2.0451 11 6 2.8209 -5.0617 2.3463 12 6 3.1482 -4.9204 3.8422 13 1 3.8448 -4.1118 4.0637 14 16 3.6095 -6.4849 4.6360 15 8 2.9742 -7.5788 3.9887 16 8 3.5809 -6.3537 6.0506 17 8 5.0849 -6.6582 4.3048 18 6 5.9107 -5.8506 5.0209 19 6 6.2372 -4.5903 4.5415 20 6 7.0811 -3.7733 5.2686 21 6 7.5910 -4.2061 6.4788 22 6 8.5063 -3.3103 7.2730 23 8 9.6673 -3.0072 6.4969 24 14 9.0170 -4.1774 8.8408 25 6 7.2628 -5.4596 6.9613 26 6 6.4239 -6.2826 6.2352 27 6 1.6734 -4.5366 4.0481 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 2.6260 -2.2362 3.0838 38 1 3.6024 -4.6783 1.6902 39 1 2.4829 -6.0593 2.0655 40 1 5.8357 -4.2501 3.5984 41 1 7.3391 -2.7938 4.8938 42 1 7.9843 -2.3864 7.5219 43 1 10.1817 -3.7843 6.2390 44 1 9.7019 -5.4542 8.5150 45 1 9.9195 -3.3041 9.6334 46 1 7.6626 -5.7956 7.9066 47 1 6.1675 -7.2615 6.6126 48 1 1.0216 -5.3905 4.2326 49 1 1.5282 -3.7302 4.7670 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_79476_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:39:42 Heat of formation + Delta-G solvation = -148.082182 kcal Electronic energy + Delta-G solvation = -34750.164079 eV Core-core repulsion = 29966.672423 eV Total energy + Delta-G solvation = -4783.491656 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.31882 -41.96506 -40.51753 -39.97544 -38.34825 -37.85645 -37.62117 -37.22374 -35.34574 -34.06827 -32.61734 -32.25051 -28.38381 -28.34097 -27.46617 -27.30140 -27.03303 -24.48958 -23.92432 -23.52915 -21.80473 -21.28117 -20.89982 -19.71654 -19.38817 -18.99529 -18.62727 -18.45833 -17.67205 -17.35647 -17.16429 -16.91107 -16.65102 -16.45833 -16.32666 -15.76062 -15.65260 -15.47881 -15.32911 -14.98776 -14.71716 -14.58698 -14.41077 -14.37217 -14.18070 -14.14046 -13.99750 -13.66916 -13.46287 -13.38085 -13.32582 -13.18758 -13.15010 -12.92350 -12.88671 -12.58071 -12.51962 -12.40872 -12.38964 -12.27011 -12.16776 -11.83494 -11.46137 -11.36444 -11.06432 -10.84399 -10.40410 -10.38698 -10.09626 -5.08009 -1.17121 -0.23943 -0.03931 0.89731 1.02329 1.10636 1.46736 1.74657 1.84240 2.16134 2.39462 2.55710 2.75146 2.95161 3.03039 3.15500 3.29754 3.33687 3.42742 3.47088 3.53352 3.71605 3.77431 3.83237 3.91355 3.91458 4.08679 4.14699 4.17124 4.28547 4.32485 4.36918 4.50133 4.51948 4.56307 4.58171 4.58267 4.66972 4.72080 4.73274 4.83506 4.84320 4.87836 4.92533 5.03241 5.06892 5.15751 5.31385 5.38433 5.48626 5.50606 6.20888 6.26339 7.30155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.654 3.346 7 O -0.560 6.560 8 N -0.696 5.696 9 C 0.153 3.847 10 H 0.122 0.878 11 C -0.123 4.123 12 C -0.655 4.655 13 H 0.155 0.845 14 S 2.599 3.401 15 O -0.918 6.918 16 O -0.944 6.944 17 O -0.661 6.661 18 C 0.070 3.930 19 C -0.130 4.130 20 C -0.075 4.075 21 C -0.101 4.101 22 C -0.078 4.078 23 O -0.527 6.527 24 Si 0.684 3.316 25 C -0.098 4.098 26 C -0.083 4.083 27 C -0.111 4.111 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.407 0.593 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.378 0.622 44 H -0.257 1.257 45 H -0.253 1.253 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.112 0.888 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 4.097 1.856 4.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.449 6.449 8 N -0.355 5.355 9 C 0.047 3.953 10 H 0.140 0.860 11 C -0.163 4.163 12 C -0.761 4.761 13 H 0.173 0.827 14 S 2.694 3.306 15 O -0.916 6.916 16 O -0.943 6.943 17 O -0.620 6.620 18 C 0.029 3.971 19 C -0.150 4.150 20 C -0.093 4.093 21 C -0.102 4.102 22 C -0.187 4.187 23 O -0.333 6.333 24 Si 0.585 3.415 25 C -0.115 4.115 26 C -0.103 4.103 27 C -0.150 4.150 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.143 0.857 43 H 0.226 0.774 44 H -0.181 1.181 45 H -0.178 1.178 46 H 0.161 0.839 47 H 0.164 0.836 48 H 0.131 0.869 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.063 3.453 2.135 4.196 hybrid contribution 0.897 0.496 -1.091 1.497 sum 1.960 3.949 1.044 4.530 Atomic orbital electron populations 1.22528 0.93733 1.05100 1.02821 1.22151 0.94523 0.91548 0.81717 1.21883 1.02331 0.92290 1.03422 1.22529 1.01603 1.03481 0.96571 1.86307 1.71431 1.23222 1.46901 1.18039 0.78589 0.80656 0.81996 1.90937 1.40630 1.70465 1.42836 1.44289 1.55711 1.11437 1.24019 1.21614 0.98805 0.78686 0.96235 0.85990 1.23264 1.00221 1.02554 0.90210 1.32363 1.08342 1.24329 1.11105 0.82750 1.05484 0.73512 0.76718 0.74897 1.93668 1.72725 1.47931 1.77287 1.93662 1.83931 1.87037 1.29627 1.85736 1.39050 1.66312 1.70853 1.18089 0.97577 0.89406 0.92009 1.21410 1.00233 0.92433 1.00973 1.20928 0.94801 1.00075 0.93471 1.20577 0.98309 0.95037 0.96273 1.25084 0.87200 1.04463 1.01988 1.86623 1.38089 1.36465 1.72163 0.94911 0.88598 0.78754 0.79268 1.20995 0.97640 0.93161 0.99746 1.21298 0.95589 1.01216 0.92190 1.23007 0.90077 1.03630 0.98285 0.92063 0.90835 0.89396 0.91393 0.89847 0.91356 0.89386 0.90830 0.92120 0.75764 0.88793 0.86264 0.83969 0.83848 0.85702 0.77399 1.18139 1.17795 0.83942 0.83587 0.86931 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 2 C 0.14 0.07 1.13 -90.62 -0.10 -0.03 16 3 C -0.14 0.19 8.85 37.16 0.33 0.52 16 4 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 5 O -0.36 -0.49 9.94 -40.32 -0.40 -0.89 16 6 C 0.65 1.04 8.06 54.05 0.44 1.47 16 7 O -0.56 -2.24 11.48 -19.28 -0.22 -2.46 16 8 N -0.70 1.05 5.27 -57.93 -0.31 0.74 16 9 C 0.15 -0.30 4.32 -67.11 -0.29 -0.59 16 10 H 0.12 -0.13 7.47 -51.93 -0.39 -0.51 16 11 C -0.12 0.28 7.44 -25.92 -0.19 0.09 16 12 C -0.65 1.88 3.90 -25.92 -0.10 1.78 16 13 H 0.15 -0.79 6.08 -51.93 -0.32 -1.10 16 14 S 2.60 1.80 5.14 -107.50 -0.55 1.24 16 15 O -0.92 -3.58 17.27 -67.04 -1.16 -4.73 16 16 O -0.94 -2.47 16.26 -67.04 -1.09 -3.56 16 17 O -0.66 -0.65 10.05 -51.74 -0.52 -1.17 16 18 C 0.07 0.01 4.80 -39.21 -0.19 -0.18 16 19 C -0.13 0.26 8.50 -39.43 -0.34 -0.08 16 20 C -0.07 0.17 9.60 -39.60 -0.38 -0.21 16 21 C -0.10 0.20 5.39 -104.60 -0.56 -0.36 16 22 C -0.08 0.19 2.82 36.00 0.10 0.29 16 23 O -0.53 0.48 12.77 -35.23 -0.45 0.03 16 24 Si 0.68 -1.72 29.78 -169.99 -5.06 -6.78 16 25 C -0.10 0.17 8.66 -39.61 -0.34 -0.17 16 26 C -0.08 0.01 9.05 -39.43 -0.36 -0.35 16 27 C -0.11 0.37 7.42 -25.92 -0.19 0.18 16 28 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 30 H 0.09 0.23 5.88 -51.93 -0.31 -0.07 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.09 0.24 5.88 -51.93 -0.31 -0.07 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 36 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.41 -1.51 8.81 -40.82 -0.36 -1.87 16 38 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 39 H 0.12 -0.25 7.43 -51.93 -0.39 -0.64 16 40 H 0.14 -0.63 7.22 -52.49 -0.38 -1.01 16 41 H 0.14 -0.52 8.06 -52.49 -0.42 -0.94 16 42 H 0.13 -0.43 7.96 -51.93 -0.41 -0.84 16 43 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 44 H -0.26 0.16 7.11 56.52 0.40 0.56 16 45 H -0.25 -0.25 7.11 56.52 0.40 0.16 16 46 H 0.14 -0.53 4.87 -52.49 -0.26 -0.78 16 47 H 0.15 -0.15 8.06 -52.49 -0.42 -0.57 16 48 H 0.11 -0.47 8.10 -51.93 -0.42 -0.89 16 49 H 0.10 -0.47 8.14 -51.93 -0.42 -0.90 16 LS Contribution 406.64 15.07 6.13 6.13 Total: 0.00 -11.03 406.64 -12.17 -23.20 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: -6.98 Total: -14.51 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.56 Total: 2.76 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -0.31 Total: 0.74 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -3.84 Total: -12.79 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: -5.06 Total: -6.78 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -0.55 Total: 1.24 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -11.03 -12.17 -23.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79476_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.879 kcal (2) G-P(sol) polarization free energy of solvation -11.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds