Wall clock time and date at job start Sat Mar 6 2021 00:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47426 * 2 1 4 4 C 1.53001 * 109.47231 * 239.99447 * 2 1 3 5 5 O 1.45206 * 109.46965 * 119.99755 * 2 1 3 6 6 C 1.34638 * 116.99749 * 59.99847 * 5 2 1 7 7 O 1.21505 * 120.00379 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99542 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99712 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91190 * 336.25239 * 9 8 6 11 11 C 1.53788 * 113.61289 * 107.50563 * 9 8 6 12 12 C 1.53779 * 87.08270 * 89.11354 * 11 9 8 13 13 H 1.09003 * 113.69216 * 270.87180 * 12 11 9 14 14 S 1.81400 * 113.61088 * 139.97977 * 12 11 9 15 15 O 1.42097 * 110.54482 * 330.87778 * 14 12 11 16 16 O 1.42099 * 110.54158 * 194.12483 * 14 12 11 17 17 O 1.52206 * 104.44808 * 82.50563 * 14 12 11 18 18 C 1.35897 * 113.99911 * 74.99908 * 17 14 12 19 19 C 1.38738 * 120.05494 * 270.27325 * 18 17 14 20 20 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 21 21 C 1.38274 * 120.05552 * 359.44290 * 20 19 18 22 22 C 1.50696 * 119.94301 * 180.27916 * 21 20 19 23 23 O 1.42900 * 109.47297 * 300.00018 * 22 21 20 24 24 Si 1.86297 * 109.46975 * 180.02562 * 22 21 20 25 25 C 1.38261 * 120.10990 * 0.30244 * 21 20 19 26 26 C 1.38149 * 120.05703 * 359.97438 * 25 21 20 27 27 C 1.53778 * 87.08128 * 25.43383 * 12 11 9 28 28 H 1.09000 * 109.47135 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.46736 * 60.00197 * 1 2 3 30 30 H 1.08993 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47474 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47053 * 300.00193 * 3 2 1 33 33 H 1.08995 * 109.47134 * 59.99275 * 3 2 1 34 34 H 1.08993 * 109.47184 * 300.00440 * 4 2 1 35 35 H 1.09002 * 109.46971 * 60.00499 * 4 2 1 36 36 H 1.09005 * 109.46888 * 180.02562 * 4 2 1 37 37 H 0.96999 * 120.00140 * 0.02562 * 8 6 5 38 38 H 1.09001 * 113.60898 * 334.56294 * 11 9 8 39 39 H 1.09002 * 113.61316 * 203.66712 * 11 9 8 40 40 H 1.07998 * 120.02566 * 359.97438 * 19 18 17 41 41 H 1.08002 * 119.97550 * 179.72852 * 20 19 18 42 42 H 1.08998 * 109.47091 * 60.00335 * 22 21 20 43 43 H 0.96697 * 113.99797 * 300.00534 * 23 22 21 44 44 H 1.48504 * 109.99942 * 58.68038 * 24 22 21 45 45 H 1.48505 * 110.00265 * 180.02562 * 24 22 21 46 46 H 1.07996 * 119.97484 * 179.97438 * 25 21 20 47 47 H 1.07998 * 120.02878 * 180.02562 * 26 25 21 48 48 H 1.08998 * 113.61701 * 89.11438 * 27 12 11 49 49 H 1.09001 * 113.61660 * 219.93713 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0671 -2.6653 2.4173 9 6 1.6729 -4.0664 2.5839 10 1 0.7592 -4.3171 2.0451 11 6 2.8209 -5.0617 2.3463 12 6 3.1482 -4.9204 3.8422 13 1 3.8448 -4.1118 4.0637 14 16 3.6095 -6.4849 4.6360 15 8 2.9742 -7.5788 3.9887 16 8 3.5809 -6.3537 6.0506 17 8 5.0849 -6.6582 4.3048 18 6 5.9107 -5.8506 5.0209 19 6 6.2372 -4.5903 4.5415 20 6 7.0811 -3.7733 5.2686 21 6 7.5910 -4.2061 6.4788 22 6 8.5063 -3.3103 7.2730 23 8 9.6673 -3.0072 6.4969 24 14 9.0170 -4.1774 8.8408 25 6 7.2628 -5.4596 6.9613 26 6 6.4239 -6.2826 6.2352 27 6 1.6734 -4.5366 4.0481 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 2.6260 -2.2362 3.0838 38 1 3.6024 -4.6783 1.6902 39 1 2.4829 -6.0593 2.0655 40 1 5.8357 -4.2501 3.5984 41 1 7.3391 -2.7938 4.8938 42 1 7.9843 -2.3864 7.5219 43 1 10.1817 -3.7843 6.2390 44 1 9.7019 -5.4542 8.5150 45 1 9.9195 -3.3041 9.6334 46 1 7.6626 -5.7956 7.9066 47 1 6.1675 -7.2615 6.6126 48 1 1.0216 -5.3905 4.2326 49 1 1.5282 -3.7302 4.7670 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_79476_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:39:41 Heat of formation + Delta-G solvation = -151.348616 kcal Electronic energy + Delta-G solvation = -34750.305722 eV Core-core repulsion = 29966.672423 eV Total energy + Delta-G solvation = -4783.633299 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.25016 -41.98015 -40.41715 -39.85483 -38.45774 -37.89534 -37.50255 -37.32964 -35.37664 -34.02221 -32.44877 -32.11388 -28.37366 -28.31012 -27.35137 -27.12197 -26.87728 -24.34699 -23.88026 -23.43281 -21.73930 -21.27722 -20.78149 -19.70058 -19.36573 -18.96723 -18.60248 -18.37153 -17.63434 -17.28125 -17.18903 -16.78690 -16.52165 -16.39979 -16.20590 -15.74011 -15.54016 -15.43572 -15.27452 -14.84861 -14.64225 -14.49436 -14.36516 -14.31857 -14.13789 -14.04753 -13.84426 -13.57584 -13.46218 -13.38514 -13.35618 -13.22151 -13.14721 -12.93323 -12.87594 -12.55830 -12.40835 -12.36627 -12.30580 -12.15016 -11.99087 -11.74077 -11.41783 -11.36208 -11.15252 -10.69687 -10.32379 -10.23356 -9.97106 -4.91047 -1.14702 -0.12690 0.12235 0.92540 1.06137 1.28611 1.59585 1.68325 1.96400 2.31181 2.45232 2.63513 2.89159 3.02277 3.14168 3.37596 3.46028 3.51510 3.61684 3.66270 3.73074 3.75291 3.78852 3.93523 3.95178 4.12932 4.25761 4.33403 4.41752 4.45854 4.49178 4.55133 4.60863 4.61360 4.72408 4.76246 4.76436 4.77619 4.81912 4.82423 4.87374 4.89365 4.99434 5.07488 5.11462 5.24848 5.25668 5.26738 5.35630 5.55958 5.65110 6.33333 6.46704 7.29236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.129 3.871 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.681 5.681 9 C 0.149 3.851 10 H 0.110 0.890 11 C -0.126 4.126 12 C -0.628 4.628 13 H 0.184 0.816 14 S 2.598 3.402 15 O -0.961 6.961 16 O -0.970 6.970 17 O -0.669 6.669 18 C 0.046 3.954 19 C -0.127 4.127 20 C -0.073 4.073 21 C -0.099 4.099 22 C -0.075 4.075 23 O -0.543 6.543 24 Si 0.750 3.250 25 C -0.101 4.101 26 C -0.105 4.105 27 C -0.110 4.110 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.420 0.580 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.141 0.859 43 H 0.388 0.612 44 H -0.283 1.283 45 H -0.302 1.302 46 H 0.157 0.843 47 H 0.142 0.858 48 H 0.119 0.881 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 6.191 1.711 6.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.341 5.341 9 C 0.043 3.957 10 H 0.128 0.872 11 C -0.166 4.166 12 C -0.738 4.738 13 H 0.201 0.799 14 S 2.698 3.302 15 O -0.959 6.959 16 O -0.968 6.968 17 O -0.628 6.628 18 C 0.005 3.995 19 C -0.147 4.147 20 C -0.091 4.091 21 C -0.101 4.101 22 C -0.185 4.185 23 O -0.351 6.351 24 Si 0.657 3.343 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.186 0.814 41 H 0.180 0.820 42 H 0.158 0.842 43 H 0.237 0.763 44 H -0.210 1.210 45 H -0.230 1.230 46 H 0.174 0.826 47 H 0.160 0.840 48 H 0.137 0.863 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.390 5.501 2.026 6.024 hybrid contribution 0.869 -0.118 -1.042 1.362 sum 2.258 5.383 0.984 5.920 Atomic orbital electron populations 1.22485 0.94068 1.03775 1.03530 1.22340 0.94411 0.92519 0.81441 1.21893 1.02510 0.90893 1.04232 1.22484 1.01706 1.02307 0.97335 1.86311 1.71423 1.23086 1.47245 1.18285 0.78495 0.80770 0.82357 1.90929 1.42007 1.70997 1.44081 1.44223 1.55182 1.11332 1.23344 1.21617 0.98501 0.78460 0.97156 0.87164 1.23319 1.00389 1.02323 0.90573 1.32214 1.09396 1.22185 1.10038 0.79864 1.05333 0.73097 0.77449 0.74329 1.93609 1.73702 1.50887 1.77738 1.93620 1.84227 1.87675 1.31269 1.85702 1.39142 1.67129 1.70873 1.18434 0.98220 0.90378 0.92475 1.21679 0.99864 0.91362 1.01763 1.21176 0.94131 1.00673 0.93074 1.20651 0.98092 0.94761 0.96549 1.25132 0.86941 1.05083 1.01359 1.86598 1.38617 1.37560 1.72321 0.94144 0.87024 0.75746 0.77434 1.21150 0.97300 0.93204 1.00162 1.21478 0.96548 1.01684 0.92831 1.23149 0.89501 1.04490 0.97752 0.91847 0.89624 0.91662 0.91082 0.88490 0.91112 0.91654 0.89648 0.91821 0.74205 0.87896 0.86764 0.81447 0.82018 0.84182 0.76277 1.20975 1.23007 0.82629 0.83973 0.86325 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.24 8.37 71.98 0.60 0.36 16 2 C 0.13 0.08 1.13 -10.79 -0.01 0.07 16 3 C -0.14 0.56 8.85 71.98 0.64 1.19 16 4 C -0.18 -0.22 8.37 71.98 0.60 0.38 16 5 O -0.37 -0.78 9.94 -55.48 -0.55 -1.33 16 6 C 0.65 1.98 8.06 129.79 1.05 3.02 16 7 O -0.59 -5.27 11.48 19.82 0.23 -5.04 16 8 N -0.68 2.77 5.27 -567.60 -2.99 -0.22 16 9 C 0.15 -0.66 4.32 45.52 0.20 -0.46 16 10 H 0.11 -0.16 7.47 -2.39 -0.02 -0.18 16 11 C -0.13 0.63 7.44 31.12 0.23 0.86 16 12 C -0.63 4.24 3.90 31.12 0.12 4.36 16 13 H 0.18 -2.34 6.08 -2.39 -0.01 -2.36 16 14 S 2.60 5.64 5.14 -56.49 -0.29 5.35 16 15 O -0.96 -9.27 17.27 -118.57 -2.05 -11.32 16 16 O -0.97 -6.00 16.26 -118.57 -1.93 -7.93 16 17 O -0.67 -1.86 10.05 -61.48 -0.62 -2.48 16 18 C 0.05 0.02 4.80 22.51 0.11 0.12 16 19 C -0.13 0.70 8.50 22.37 0.19 0.89 16 20 C -0.07 0.48 9.60 22.26 0.21 0.69 16 21 C -0.10 0.52 5.39 -19.85 -0.11 0.42 16 22 C -0.08 0.46 2.82 71.23 0.20 0.66 16 23 O -0.54 1.60 12.77 -148.98 -1.90 -0.30 16 24 Si 0.75 -3.74 29.78 68.60 2.04 -1.70 16 25 C -0.10 0.37 8.66 22.25 0.19 0.56 16 26 C -0.11 -0.04 9.05 22.37 0.20 0.16 16 27 C -0.11 0.85 7.42 31.12 0.23 1.08 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.06 0.42 5.88 -2.39 -0.01 0.41 16 31 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.10 -0.66 8.14 -2.39 -0.02 -0.67 16 33 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.06 0.42 5.88 -2.39 -0.01 0.40 16 35 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 37 H 0.42 -4.00 8.81 -92.71 -0.82 -4.82 16 38 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.11 -0.40 7.43 -2.39 -0.02 -0.42 16 40 H 0.17 -1.92 7.22 -2.91 -0.02 -1.94 16 41 H 0.16 -1.64 8.06 -2.91 -0.02 -1.67 16 42 H 0.14 -1.24 7.96 -2.39 -0.02 -1.26 16 43 H 0.39 -3.05 8.70 -74.06 -0.64 -3.70 16 44 H -0.28 0.21 7.11 99.48 0.71 0.91 16 45 H -0.30 -0.99 7.11 99.48 0.71 -0.28 16 46 H 0.16 -1.16 4.87 -2.91 -0.01 -1.18 16 47 H 0.14 -0.01 8.06 -2.91 -0.02 -0.04 16 48 H 0.12 -1.02 8.10 -2.39 -0.02 -1.04 16 49 H 0.12 -1.42 8.14 -2.39 -0.02 -1.44 16 Total: 0.00 -27.66 406.64 -3.82 -31.48 By element: Atomic # 1 Polarization: -20.47 SS G_CDS: -0.42 Total: -20.89 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 4.66 Total: 14.37 kcal Atomic # 7 Polarization: 2.77 SS G_CDS: -2.99 Total: -0.22 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -6.82 Total: -28.39 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.04 Total: -1.70 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -0.29 Total: 5.35 kcal Total: -27.66 -3.82 -31.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79476_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.870 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds