Wall clock time and date at job start Sat Mar 6 2021 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35987 * 116.99845 * 2 1 4 4 C 1.39157 * 120.07215 * 180.02562 * 3 2 1 5 5 O 1.35997 * 120.07218 * 359.97438 * 4 3 2 6 6 S 1.52205 * 113.99832 * 90.00078 * 5 4 3 7 7 O 1.42102 * 104.27407 * 191.07291 * 6 5 4 8 8 O 1.42101 * 104.27569 * 318.92474 * 6 5 4 9 9 C 1.81393 * 104.45003 * 75.00138 * 6 5 4 10 10 H 1.09002 * 112.85276 * 53.79941 * 9 6 5 11 11 C 1.53786 * 113.61379 * 184.99768 * 9 6 5 12 12 C 1.53782 * 87.08005 * 139.97967 * 11 9 6 13 13 H 1.09000 * 113.61404 * 89.11661 * 12 11 9 14 14 N 1.46499 * 113.61477 * 220.01981 * 12 11 9 15 15 C 1.34781 * 120.00044 * 205.00048 * 14 12 11 16 16 O 1.21502 * 119.99989 * 359.97438 * 15 14 12 17 17 O 1.34641 * 120.00091 * 179.97438 * 15 14 12 18 18 C 1.45194 * 117.00274 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47046 * 60.00025 * 18 17 15 20 20 C 1.52992 * 109.47403 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.46899 * 300.00315 * 18 17 15 22 22 C 1.53781 * 113.61327 * 282.49513 * 9 6 5 23 23 C 1.38558 * 119.85607 * 179.97438 * 4 3 2 24 24 C 1.38250 * 120.00006 * 359.73238 * 23 4 3 25 25 C 1.38252 * 120.14127 * 0.54306 * 24 23 4 26 26 C 1.50705 * 119.92621 * 179.73018 * 25 24 23 27 27 O 1.42894 * 109.47171 * 119.72540 * 26 25 24 28 28 Si 1.86298 * 109.46780 * 359.71981 * 26 25 24 29 29 C 1.38245 * 120.14917 * 359.44836 * 25 24 23 30 30 H 1.08994 * 109.47391 * 300.00357 * 1 2 3 31 31 H 1.08997 * 109.46671 * 60.00837 * 1 2 3 32 32 H 1.09007 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.08991 * 113.61476 * 254.53000 * 11 9 6 34 34 H 1.09003 * 113.61104 * 25.34996 * 11 9 6 35 35 H 0.97006 * 120.00134 * 25.00151 * 14 12 11 36 36 H 1.08996 * 109.46958 * 59.99805 * 19 18 17 37 37 H 1.08998 * 109.47080 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47034 * 300.00089 * 19 18 17 39 39 H 1.09008 * 109.47228 * 60.00012 * 20 18 17 40 40 H 1.08994 * 109.47550 * 179.97438 * 20 18 17 41 41 H 1.09007 * 109.47266 * 300.00339 * 20 18 17 42 42 H 1.09006 * 109.47442 * 59.99751 * 21 18 17 43 43 H 1.08998 * 109.47182 * 179.97438 * 21 18 17 44 44 H 1.09002 * 109.47401 * 299.99615 * 21 18 17 45 45 H 1.09003 * 113.61518 * 334.56553 * 22 9 6 46 46 H 1.08994 * 113.61722 * 105.47269 * 22 9 6 47 47 H 1.07997 * 120.00240 * 179.97438 * 23 4 3 48 48 H 1.07993 * 119.93049 * 180.28735 * 24 23 4 49 49 H 1.09004 * 109.46779 * 239.72863 * 26 25 24 50 50 H 0.96709 * 113.99337 * 180.02562 * 27 26 25 51 51 H 1.48506 * 109.99834 * 60.00830 * 28 26 25 52 52 H 1.48502 * 110.00011 * 181.32094 * 28 26 25 53 53 H 1.07995 * 120.00214 * 180.24904 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 -0.0005 6 16 4.5175 -0.3710 -1.3910 7 8 5.0492 -1.6687 -1.1613 8 8 3.3190 -0.1912 -2.1330 9 6 5.8115 0.7501 -1.9902 10 1 6.6534 0.8309 -1.3025 11 6 6.2290 0.4867 -3.4466 12 6 6.2919 2.0132 -3.6220 13 1 7.2651 2.4406 -3.3807 14 7 5.7680 2.4781 -4.9087 15 6 6.1895 3.6500 -5.4241 16 8 7.0037 4.3210 -4.8214 17 8 5.7084 4.0771 -6.6069 18 6 6.2074 5.3478 -7.1014 19 6 7.7246 5.2651 -7.2805 20 6 5.5512 5.6647 -8.4466 21 6 5.8718 6.4528 -6.0979 22 6 5.2750 2.1083 -2.4722 23 6 4.0603 2.5232 -0.0011 24 6 3.3030 3.6798 -0.0067 25 6 1.9225 3.6057 -0.0004 26 6 1.1016 4.8696 -0.0004 27 8 0.2768 4.9019 -1.1668 28 14 2.2366 6.3470 -0.0010 29 6 1.2932 2.3747 0.0000 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 7.1976 -0.0040 -3.5413 34 1 5.4522 0.0089 -4.0438 35 1 5.1177 1.9426 -5.3897 36 1 7.9637 4.4778 -7.9953 37 1 8.0993 6.2191 -7.6513 38 1 8.1919 5.0395 -6.3218 39 1 4.4702 5.7238 -8.3187 40 1 5.9254 6.6188 -8.8177 41 1 5.7899 4.8775 -9.1618 42 1 6.3390 6.2272 -5.1392 43 1 6.2467 7.4067 -6.4689 44 1 4.7909 6.5118 -5.9703 45 1 4.2371 2.0751 -2.8035 46 1 5.4736 2.9267 -1.7804 47 1 5.1386 2.5839 -0.0011 48 1 3.7908 4.6433 -0.0118 49 1 0.4732 4.8946 0.8899 50 1 -0.2799 5.6899 -1.2330 51 1 3.0988 6.3245 -1.2099 52 1 1.4396 7.5996 0.0312 53 1 0.2147 2.3196 0.0008 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_79479_14316444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:54:16 Heat of formation + Delta-G solvation = -183.394171 kcal Electronic energy + Delta-G solvation = -40898.125149 eV Core-core repulsion = 35638.882439 eV Total energy + Delta-G solvation = -5259.242710 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.152 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.51329 -41.93644 -40.36595 -40.28886 -39.12082 -38.41884 -37.93286 -37.43090 -37.26142 -35.42630 -34.20175 -32.42741 -31.58471 -28.66818 -28.38980 -28.33647 -27.27422 -27.06128 -26.85940 -23.89977 -23.55735 -23.29844 -21.87526 -21.49327 -20.87681 -19.81480 -19.26827 -19.02050 -18.81495 -18.56800 -18.43329 -17.91233 -17.38304 -17.23841 -16.99468 -16.77335 -16.38149 -16.25416 -15.98750 -15.93414 -15.58688 -15.39892 -15.34645 -15.15440 -14.49774 -14.35913 -14.22377 -14.14824 -14.05450 -13.87466 -13.80507 -13.50893 -13.42474 -13.39420 -13.29239 -13.23902 -13.13482 -12.93913 -12.91950 -12.89605 -12.81858 -12.67154 -12.57399 -12.37212 -12.31794 -12.18502 -11.99516 -11.78884 -11.42611 -11.36347 -11.14503 -10.62347 -10.31886 -10.02770 -9.47530 -4.91696 -1.12575 -0.16686 0.10329 0.96389 1.12961 1.26216 1.62089 1.67698 1.97017 2.06444 2.22608 2.39905 2.68067 2.93772 3.13906 3.15431 3.24643 3.42396 3.50677 3.53741 3.69798 3.71307 3.73867 3.76907 3.91538 4.00402 4.01196 4.20594 4.22128 4.27370 4.33720 4.35636 4.40462 4.44351 4.51933 4.58948 4.60978 4.62949 4.66699 4.71750 4.73796 4.76170 4.80558 4.81897 4.84649 4.89148 4.95576 5.09257 5.17366 5.23584 5.24890 5.34810 5.42136 5.53705 6.09979 6.31397 6.55006 7.27152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.140 3.860 4 C 0.006 3.994 5 O -0.656 6.656 6 S 2.593 3.407 7 O -0.973 6.973 8 O -0.967 6.967 9 C -0.621 4.621 10 H 0.200 0.800 11 C -0.117 4.117 12 C 0.157 3.843 13 H 0.135 0.865 14 N -0.696 5.696 15 C 0.646 3.354 16 O -0.586 6.586 17 O -0.372 6.372 18 C 0.127 3.873 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.181 4.181 22 C -0.138 4.138 23 C -0.072 4.072 24 C -0.140 4.140 25 C -0.017 4.017 26 C -0.091 4.091 27 O -0.555 6.555 28 Si 0.764 3.236 29 C -0.178 4.178 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.416 0.584 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.122 0.878 47 H 0.189 0.811 48 H 0.169 0.831 49 H 0.107 0.893 50 H 0.398 0.602 51 H -0.289 1.289 52 H -0.287 1.287 53 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 7.154 1.362 7.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.091 3.909 4 C -0.036 4.036 5 O -0.615 6.615 6 S 2.692 3.308 7 O -0.972 6.972 8 O -0.965 6.965 9 C -0.732 4.732 10 H 0.217 0.783 11 C -0.157 4.157 12 C 0.052 3.948 13 H 0.153 0.847 14 N -0.355 5.355 15 C 0.400 3.600 16 O -0.477 6.477 17 O -0.287 6.287 18 C 0.091 3.909 19 C -0.237 4.237 20 C -0.196 4.196 21 C -0.238 4.238 22 C -0.177 4.177 23 C -0.091 4.091 24 C -0.157 4.157 25 C -0.018 4.018 26 C -0.199 4.199 27 O -0.366 6.366 28 Si 0.668 3.332 29 C -0.197 4.197 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.253 0.747 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.118 0.882 46 H 0.140 0.860 47 H 0.206 0.794 48 H 0.186 0.814 49 H 0.125 0.875 50 H 0.249 0.751 51 H -0.216 1.216 52 H -0.214 1.214 53 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.415 6.787 1.277 6.919 hybrid contribution -1.321 -0.193 -0.898 1.609 sum -1.736 6.594 0.378 6.829 Atomic orbital electron populations 1.23468 0.75690 1.05970 1.02842 1.86136 1.24204 1.26402 1.87455 1.19382 0.91118 0.86127 0.94290 1.17676 0.86289 0.82896 1.16751 1.85692 1.72062 1.46970 1.56792 1.05551 0.76422 0.75531 0.73255 1.93579 1.81988 1.38289 1.83304 1.93610 1.43622 1.86533 1.72745 1.31976 1.19282 1.12618 1.09291 0.78305 1.23226 1.05897 0.97149 0.89393 1.22516 0.98890 0.93452 0.79963 0.84750 1.44821 1.47386 1.20078 1.23228 1.18347 0.79399 0.82287 0.79970 1.90894 1.37006 1.56990 1.62788 1.86324 1.66159 1.41103 1.35072 1.22347 0.94703 0.78939 0.94894 1.22474 0.94071 1.03775 1.03355 1.21901 1.01440 1.03427 0.92867 1.22484 1.02066 0.98793 1.00442 1.23720 1.00971 0.93938 0.99100 1.21550 1.03172 0.88252 0.96133 1.21049 0.92356 0.99000 1.03322 1.19561 0.93877 0.93682 0.94694 1.25109 1.00164 1.03252 0.91414 1.86547 1.58437 1.48169 1.43435 0.94175 0.79773 0.72746 0.86504 1.21185 1.01460 0.90226 1.06796 0.90300 0.91560 0.86555 0.85890 0.87760 0.74669 0.91999 0.89472 0.91372 0.91437 0.88264 0.91214 0.91321 0.89417 0.92341 0.88171 0.86019 0.79420 0.81390 0.87547 0.75080 1.21642 1.21393 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.12 16 2 O -0.33 -3.11 9.73 -72.55 -0.71 -3.81 16 3 C 0.14 0.96 5.93 22.57 0.13 1.09 16 4 C 0.01 0.03 4.64 22.57 0.10 0.13 16 5 O -0.66 -4.77 9.84 -60.54 -0.60 -5.36 16 6 S 2.59 17.22 5.15 -56.49 -0.29 16.93 16 7 O -0.97 -14.36 18.09 -118.57 -2.15 -16.50 16 8 O -0.97 -10.83 15.13 -117.13 -1.77 -12.60 16 9 C -0.62 2.72 3.97 31.12 0.12 2.85 16 10 H 0.20 -2.24 8.14 -2.39 -0.02 -2.26 16 11 C -0.12 0.61 7.42 31.12 0.23 0.85 16 12 C 0.16 -0.55 4.24 45.52 0.19 -0.35 16 13 H 0.13 -0.47 7.47 -2.39 -0.02 -0.49 16 14 N -0.70 0.21 5.36 -567.60 -3.04 -2.83 16 15 C 0.65 3.47 8.06 129.79 1.05 4.52 16 16 O -0.59 -5.34 11.48 19.83 0.23 -5.11 16 17 O -0.37 -1.95 9.94 -55.50 -0.55 -2.50 16 18 C 0.13 0.32 1.13 -10.80 -0.01 0.31 16 19 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 20 C -0.14 0.26 8.85 71.98 0.64 0.89 16 21 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 22 C -0.14 0.58 5.11 31.12 0.16 0.74 16 23 C -0.07 0.21 6.70 22.35 0.15 0.36 16 24 C -0.14 0.56 8.66 22.28 0.19 0.75 16 25 C -0.02 0.02 5.42 -19.86 -0.11 -0.09 16 26 C -0.09 0.43 2.81 71.24 0.20 0.63 16 27 O -0.56 0.89 12.74 -148.98 -1.90 -1.01 16 28 Si 0.76 -4.54 29.78 68.60 2.04 -2.50 16 29 C -0.18 -0.39 8.60 22.35 0.19 -0.19 16 30 H 0.08 -0.29 7.66 -2.39 -0.02 -0.30 16 31 H 0.07 -0.03 7.66 -2.39 -0.02 -0.04 16 32 H 0.12 -0.24 8.14 -2.38 -0.02 -0.26 16 33 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.10 -0.59 8.08 -2.39 -0.02 -0.61 16 35 H 0.42 -1.37 8.84 -92.70 -0.82 -2.19 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.07 0.46 5.88 -2.38 -0.01 0.44 16 39 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 40 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 42 H 0.07 0.48 5.88 -2.38 -0.01 0.46 16 43 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.10 -0.15 7.53 -2.39 -0.02 -0.17 16 46 H 0.12 -1.02 5.95 -2.39 -0.01 -1.04 16 47 H 0.19 -2.05 6.56 -2.91 -0.02 -2.07 16 48 H 0.17 -1.60 4.87 -2.91 -0.01 -1.61 16 49 H 0.11 -0.97 7.96 -2.38 -0.02 -0.99 16 50 H 0.40 -3.71 8.74 -74.05 -0.65 -4.36 16 51 H -0.29 -0.25 7.11 99.48 0.71 0.46 16 52 H -0.29 0.31 7.11 99.48 0.71 1.02 16 53 H 0.15 -0.10 6.30 -2.91 -0.02 -0.12 16 Total: 0.00 -33.74 430.36 -3.62 -37.36 By element: Atomic # 1 Polarization: -15.55 SS G_CDS: -0.45 Total: -16.00 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.56 Total: 13.94 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: -3.04 Total: -2.83 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -7.44 Total: -46.90 kcal Atomic # 14 Polarization: -4.54 SS G_CDS: 2.04 Total: -2.50 kcal Atomic # 16 Polarization: 17.22 SS G_CDS: -0.29 Total: 16.93 kcal Total: -33.74 -3.62 -37.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79479_14316444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.038 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds