Wall clock time and date at job start Sat Mar 6 2021 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 117.00413 * 2 1 4 4 C 1.39153 * 120.07144 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07296 * 359.97438 * 4 3 2 6 6 S 1.52196 * 113.99797 * 90.00451 * 5 4 3 7 7 O 1.42104 * 104.27695 * 191.07036 * 6 5 4 8 8 O 1.42095 * 104.27732 * 318.92394 * 6 5 4 9 9 C 1.81401 * 104.45114 * 74.99822 * 6 5 4 10 10 H 1.09001 * 112.85049 * 55.33522 * 9 6 5 11 11 C 1.53783 * 113.61423 * 186.52542 * 9 6 5 12 12 C 1.53783 * 87.07912 * 139.97983 * 11 9 6 13 13 H 1.09001 * 113.61720 * 220.02073 * 12 11 9 14 14 N 1.46500 * 113.61192 * 89.20239 * 12 11 9 15 15 C 1.34775 * 120.00026 * 154.99883 * 14 12 11 16 16 O 1.21507 * 119.99910 * 0.02562 * 15 14 12 17 17 O 1.34635 * 119.99786 * 180.02562 * 15 14 12 18 18 C 1.45207 * 116.99789 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47029 * 59.99819 * 18 17 15 20 20 C 1.52997 * 109.46977 * 179.97438 * 18 17 15 21 21 C 1.52994 * 109.46858 * 299.99739 * 18 17 15 22 22 C 1.53779 * 113.61367 * 284.13654 * 9 6 5 23 23 C 1.38563 * 119.85224 * 180.02562 * 4 3 2 24 24 C 1.38245 * 120.00301 * 359.72280 * 23 4 3 25 25 C 1.38261 * 120.14178 * 0.54753 * 24 23 4 26 26 C 1.50699 * 119.92538 * 179.72723 * 25 24 23 27 27 O 1.42892 * 109.47249 * 119.73101 * 26 25 24 28 28 Si 1.86298 * 109.47032 * 359.72486 * 26 25 24 29 29 C 1.38242 * 120.14400 * 359.45608 * 25 24 23 30 30 H 1.09000 * 109.46817 * 59.99582 * 1 2 3 31 31 H 1.08995 * 109.47739 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46938 * 300.00589 * 1 2 3 33 33 H 1.08994 * 113.61648 * 254.53280 * 11 9 6 34 34 H 1.09007 * 113.61249 * 25.43500 * 11 9 6 35 35 H 0.97002 * 120.00296 * 334.99941 * 14 12 11 36 36 H 1.08994 * 109.47200 * 60.00343 * 19 18 17 37 37 H 1.09005 * 109.46632 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47325 * 299.99949 * 19 18 17 39 39 H 1.09007 * 109.47094 * 60.00081 * 20 18 17 40 40 H 1.09005 * 109.47309 * 179.97438 * 20 18 17 41 41 H 1.08994 * 109.47451 * 299.99779 * 20 18 17 42 42 H 1.09004 * 109.47280 * 60.00163 * 21 18 17 43 43 H 1.09001 * 109.47312 * 180.02562 * 21 18 17 44 44 H 1.09000 * 109.47648 * 299.99794 * 21 18 17 45 45 H 1.09004 * 113.61569 * 334.56636 * 22 9 6 46 46 H 1.09002 * 113.61563 * 105.47177 * 22 9 6 47 47 H 1.08005 * 120.00453 * 179.97438 * 23 4 3 48 48 H 1.07999 * 119.93162 * 180.27366 * 24 23 4 49 49 H 1.09004 * 109.46453 * 239.73169 * 26 25 24 50 50 H 0.96703 * 114.00176 * 299.99748 * 27 26 25 51 51 H 1.48506 * 109.99834 * 58.68765 * 28 26 25 52 52 H 1.48502 * 110.00011 * 180.02562 * 28 26 25 53 53 H 1.07999 * 119.99645 * 180.29063 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4360 1.2861 0.0005 5 8 4.1795 0.1474 0.0016 6 16 4.5185 -0.3718 -1.3883 7 8 5.0499 -1.6694 -1.1578 8 8 3.3207 -0.1921 -2.1314 9 6 5.8131 0.7491 -1.9869 10 1 6.6663 0.8095 -1.3112 11 6 6.2055 0.5093 -3.4544 12 6 6.2794 2.0382 -3.6023 13 1 5.8779 2.4055 -4.5468 14 7 7.5980 2.5949 -3.2899 15 6 7.9776 3.7709 -3.8278 16 8 7.2260 4.3697 -4.5715 17 8 9.1896 4.2823 -3.5410 18 6 9.5313 5.5528 -4.1555 19 6 8.5224 6.6174 -3.7201 20 6 10.9355 5.9711 -3.7150 21 6 9.4956 5.4087 -5.6782 22 6 5.2818 2.1216 -2.4326 23 6 4.0604 2.5230 0.0011 24 6 3.3032 3.6796 -0.0047 25 6 1.9226 3.6056 0.0004 26 6 1.1020 4.8696 0.0002 27 8 0.2781 4.9025 -1.1668 28 14 2.2370 6.3469 0.0011 29 6 1.2934 2.3747 -0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 7.1680 0.0120 -3.5734 34 1 5.4147 0.0509 -4.0484 35 1 8.1978 2.1172 -2.6959 36 1 8.5478 6.7201 -2.6353 37 1 8.7791 7.5713 -4.1811 38 1 7.5218 6.3196 -4.0336 39 1 11.6545 5.2126 -4.0248 40 1 11.1921 6.9246 -4.1766 41 1 10.9605 6.0738 -2.6302 42 1 8.4950 5.1109 -5.9917 43 1 9.7525 6.3623 -6.1395 44 1 10.2144 4.6502 -5.9884 45 1 4.2382 2.1049 -2.7467 46 1 5.5000 2.9241 -1.7279 47 1 5.1388 2.5837 0.0019 48 1 3.7911 4.6431 -0.0088 49 1 0.4729 4.8943 0.8901 50 1 0.7722 4.8830 -1.9978 51 1 3.1221 6.3080 -1.1908 52 1 1.4399 7.5998 0.0016 53 1 0.2148 2.3197 -0.0008 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_79479_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:58:48 Heat of formation + Delta-G solvation = -181.682902 kcal Electronic energy + Delta-G solvation = -40840.432157 eV Core-core repulsion = 35581.263653 eV Total energy + Delta-G solvation = -5259.168504 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.152 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.52254 -41.95547 -40.42187 -40.30573 -39.21131 -38.40806 -37.87678 -37.37808 -37.21766 -35.35745 -34.01247 -32.31386 -31.57808 -28.65726 -28.35963 -28.29431 -27.32432 -27.09861 -26.86527 -23.97508 -23.66949 -23.42193 -21.89139 -21.27532 -20.82795 -19.87110 -19.36424 -19.10977 -18.74046 -18.58916 -18.12198 -17.59479 -17.29825 -17.14865 -16.98075 -16.78611 -16.44793 -16.19021 -15.97894 -15.81408 -15.51259 -15.46048 -15.36707 -15.09012 -14.76734 -14.50530 -14.31054 -14.21802 -14.11926 -14.02696 -13.87684 -13.53279 -13.41163 -13.37264 -13.33715 -13.24059 -13.13631 -12.91704 -12.86077 -12.82415 -12.66207 -12.53689 -12.35082 -12.27972 -12.24407 -12.10739 -11.93867 -11.70347 -11.39720 -11.33063 -11.13261 -10.72774 -10.35855 -10.04467 -9.47470 -4.90571 -1.10322 -0.16016 0.10862 0.97383 1.08102 1.27716 1.63038 1.70056 1.99665 2.07240 2.24428 2.42506 2.70773 2.93543 3.08425 3.20617 3.30570 3.42910 3.45313 3.54808 3.69991 3.74523 3.79933 3.80425 3.92715 3.95044 4.02801 4.21577 4.27805 4.29852 4.36515 4.40304 4.46933 4.50495 4.52264 4.61464 4.62300 4.62673 4.69497 4.73150 4.77096 4.77949 4.82784 4.83817 4.88699 4.90642 4.97195 5.12626 5.15759 5.26653 5.28187 5.36957 5.43084 5.57545 6.10919 6.35078 6.45661 7.30960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.139 3.861 4 C 0.008 3.992 5 O -0.659 6.659 6 S 2.591 3.409 7 O -0.976 6.976 8 O -0.967 6.967 9 C -0.626 4.626 10 H 0.192 0.808 11 C -0.115 4.115 12 C 0.154 3.846 13 H 0.109 0.891 14 N -0.681 5.681 15 C 0.648 3.352 16 O -0.589 6.589 17 O -0.366 6.366 18 C 0.129 3.871 19 C -0.181 4.181 20 C -0.139 4.139 21 C -0.182 4.182 22 C -0.133 4.133 23 C -0.072 4.072 24 C -0.137 4.137 25 C -0.052 4.052 26 C -0.087 4.087 27 O -0.545 6.545 28 Si 0.768 3.232 29 C -0.177 4.177 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.420 0.580 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.185 0.815 48 H 0.171 0.829 49 H 0.134 0.866 50 H 0.389 0.611 51 H -0.271 1.271 52 H -0.305 1.305 53 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 6.080 2.587 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.090 3.910 4 C -0.035 4.035 5 O -0.618 6.618 6 S 2.691 3.309 7 O -0.975 6.975 8 O -0.965 6.965 9 C -0.736 4.736 10 H 0.210 0.790 11 C -0.154 4.154 12 C 0.048 3.952 13 H 0.127 0.873 14 N -0.341 5.341 15 C 0.402 3.598 16 O -0.479 6.479 17 O -0.281 6.281 18 C 0.093 3.907 19 C -0.238 4.238 20 C -0.196 4.196 21 C -0.239 4.239 22 C -0.172 4.172 23 C -0.091 4.091 24 C -0.155 4.155 25 C -0.053 4.053 26 C -0.196 4.196 27 O -0.353 6.353 28 Si 0.672 3.328 29 C -0.196 4.196 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.258 0.742 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.202 0.798 48 H 0.188 0.812 49 H 0.152 0.848 50 H 0.238 0.762 51 H -0.197 1.197 52 H -0.233 1.233 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.001 6.243 2.445 7.346 hybrid contribution -0.208 -0.785 -0.987 1.279 sum 2.793 5.458 1.457 6.302 Atomic orbital electron populations 1.23460 0.75696 1.05922 1.02876 1.86137 1.24170 1.26554 1.87444 1.19410 0.91127 0.86141 0.94296 1.17698 0.86286 0.82910 1.16566 1.85691 1.72095 1.47033 1.56950 1.05601 0.76521 0.75550 0.73186 1.93575 1.82016 1.38558 1.83306 1.93606 1.43715 1.86557 1.72642 1.32228 1.19060 1.12790 1.09571 0.79018 1.23167 1.05970 0.96932 0.89376 1.21597 0.81433 0.92958 0.99247 0.87256 1.44241 1.18412 1.20201 1.51275 1.18258 0.80625 0.81906 0.79003 1.90928 1.55130 1.61463 1.40408 1.86318 1.32921 1.39787 1.69053 1.22328 0.96710 0.78951 0.92691 1.22483 1.00117 0.98893 1.02306 1.21896 0.91881 1.02745 1.03062 1.22493 1.03403 1.03698 0.94347 1.23691 1.01022 0.93123 0.99353 1.21545 1.03008 0.88364 0.96197 1.21094 0.92453 0.98902 1.03045 1.20448 0.94464 0.95022 0.95413 1.25383 1.00965 1.01462 0.91764 1.86597 1.36431 1.95696 1.16600 0.94139 0.78211 0.72738 0.87703 1.21186 1.01431 0.90209 1.06761 0.91341 0.86687 0.90468 0.86338 0.86607 0.74203 0.91457 0.89782 0.91536 0.91335 0.88530 0.90920 0.91602 0.89682 0.92057 0.86886 0.86310 0.79821 0.81231 0.84799 0.76178 1.19723 1.23347 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.33 -2.79 9.72 -72.54 -0.71 -3.50 16 3 C 0.14 0.72 5.93 22.57 0.13 0.85 16 4 C 0.01 0.02 4.63 22.57 0.10 0.13 16 5 O -0.66 -3.95 9.84 -60.48 -0.59 -4.54 16 6 S 2.59 13.60 5.15 -56.49 -0.29 13.31 16 7 O -0.98 -13.48 18.09 -118.57 -2.15 -15.63 16 8 O -0.97 -9.42 15.18 -117.13 -1.78 -11.20 16 9 C -0.63 3.84 3.90 31.12 0.12 3.97 16 10 H 0.19 -2.46 8.14 -2.39 -0.02 -2.48 16 11 C -0.12 0.78 7.42 31.12 0.23 1.01 16 12 C 0.15 -0.80 4.33 45.58 0.20 -0.60 16 13 H 0.11 -0.24 7.46 -2.39 -0.02 -0.25 16 14 N -0.68 3.30 5.27 -567.32 -2.99 0.31 16 15 C 0.65 1.23 8.06 129.79 1.05 2.28 16 16 O -0.59 -4.39 11.48 19.82 0.23 -4.16 16 17 O -0.37 -0.47 9.94 -55.45 -0.55 -1.02 16 18 C 0.13 -0.03 1.13 -10.80 -0.01 -0.04 16 19 C -0.18 0.05 8.37 71.98 0.60 0.66 16 20 C -0.14 0.63 8.85 71.98 0.64 1.27 16 21 C -0.18 -0.16 8.37 71.98 0.60 0.44 16 22 C -0.13 0.89 4.98 31.18 0.16 1.05 16 23 C -0.07 0.37 6.66 22.35 0.15 0.52 16 24 C -0.14 0.94 8.66 22.28 0.19 1.13 16 25 C -0.05 0.20 5.39 -19.86 -0.11 0.10 16 26 C -0.09 0.44 2.82 71.24 0.20 0.64 16 27 O -0.54 0.69 12.77 -148.98 -1.90 -1.21 16 28 Si 0.77 -4.82 29.78 68.60 2.04 -2.78 16 29 C -0.18 -0.02 8.60 22.35 0.19 0.18 16 30 H 0.07 -0.10 7.66 -2.39 -0.02 -0.11 16 31 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.08 -0.29 7.66 -2.39 -0.02 -0.31 16 33 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H 0.12 -0.80 8.10 -2.38 -0.02 -0.82 16 35 H 0.42 -4.08 8.81 -92.71 -0.82 -4.90 16 36 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 38 H 0.07 0.30 5.88 -2.39 -0.01 0.29 16 39 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 40 H 0.10 -0.70 8.14 -2.38 -0.02 -0.72 16 41 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.07 0.39 5.88 -2.38 -0.01 0.37 16 43 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.02 16 45 H 0.11 -0.60 7.57 -2.39 -0.02 -0.62 16 46 H 0.12 -1.26 5.88 -2.39 -0.01 -1.27 16 47 H 0.18 -2.30 6.45 -2.91 -0.02 -2.31 16 48 H 0.17 -2.11 4.87 -2.91 -0.01 -2.12 16 49 H 0.13 -0.93 7.96 -2.38 -0.02 -0.95 16 50 H 0.39 -2.51 8.70 -74.06 -0.64 -3.15 16 51 H -0.27 0.87 7.11 99.48 0.71 1.58 16 52 H -0.31 -0.79 7.11 99.48 0.71 -0.08 16 53 H 0.15 -0.29 6.30 -2.91 -0.02 -0.31 16 Total: 0.00 -33.09 429.96 -3.57 -36.66 By element: Atomic # 1 Polarization: -20.48 SS G_CDS: -0.45 Total: -20.92 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.56 Total: 14.69 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -2.99 Total: 0.31 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -7.45 Total: -41.27 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.04 Total: -2.78 kcal Atomic # 16 Polarization: 13.60 SS G_CDS: -0.29 Total: 13.31 kcal Total: -33.09 -3.57 -36.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79479_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.018 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds