Wall clock time and date at job start Sat Mar 6 2021 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38702 * 120.02959 * 2 1 4 4 O 1.35917 * 120.04258 * 359.97438 * 3 2 1 5 5 S 1.52201 * 114.00225 * 262.71635 * 4 3 2 6 6 O 1.42101 * 104.27855 * 193.84133 * 5 4 3 7 7 O 1.42104 * 104.27454 * 321.69882 * 5 4 3 8 8 C 1.81400 * 104.44911 * 77.76867 * 5 4 3 9 9 H 1.08999 * 112.84855 * 311.27981 * 8 5 4 10 10 C 1.53780 * 113.61326 * 82.59262 * 8 5 4 11 11 C 1.53784 * 87.08021 * 139.97951 * 10 8 5 12 12 H 1.08998 * 113.61166 * 220.01602 * 11 10 8 13 13 N 1.46507 * 113.69018 * 89.12520 * 11 10 8 14 14 C 1.34774 * 119.99727 * 107.46245 * 13 11 10 15 15 O 1.21511 * 120.00518 * 0.02562 * 14 13 11 16 16 O 1.34643 * 119.99827 * 179.97438 * 14 13 11 17 17 C 1.45199 * 117.00172 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47100 * 59.99684 * 17 16 14 19 19 C 1.52997 * 109.47202 * 180.02562 * 17 16 14 20 20 C 1.53010 * 109.46755 * 300.00041 * 17 16 14 21 21 C 1.53775 * 87.08357 * 334.56671 * 11 10 8 22 22 C 1.38745 * 119.91067 * 180.02562 * 3 2 1 23 23 C 1.50706 * 120.02071 * 179.97438 * 22 3 2 24 24 O 1.42901 * 109.47078 * 75.44065 * 23 22 3 25 25 Si 1.86301 * 109.46887 * 195.43818 * 23 22 3 26 26 C 1.38113 * 119.95469 * 359.97438 * 22 3 2 27 27 C 1.38362 * 120.04536 * 0.02562 * 26 22 3 28 28 Br 1.89108 * 119.95421 * 180.28118 * 27 26 22 29 29 C 1.38170 * 120.01651 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47232 * 263.12427 * 1 2 3 31 31 H 1.09006 * 109.46797 * 23.11821 * 1 2 3 32 32 H 1.08996 * 109.47738 * 143.11584 * 1 2 3 33 33 H 1.09002 * 113.61292 * 254.52648 * 10 8 5 34 34 H 1.08996 * 113.61818 * 25.43125 * 10 8 5 35 35 H 0.96994 * 120.00285 * 287.46751 * 13 11 10 36 36 H 1.08996 * 109.46894 * 60.00326 * 18 17 16 37 37 H 1.09007 * 109.47239 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47406 * 299.99821 * 18 17 16 39 39 H 1.09002 * 109.47070 * 60.00081 * 19 17 16 40 40 H 1.09007 * 109.46817 * 179.97438 * 19 17 16 41 41 H 1.08996 * 109.47129 * 299.99880 * 19 17 16 42 42 H 1.08998 * 109.46885 * 60.00095 * 20 17 16 43 43 H 1.08999 * 109.46848 * 179.97438 * 20 17 16 44 44 H 1.08996 * 109.46982 * 299.99359 * 20 17 16 45 45 H 1.08998 * 113.61128 * 270.88748 * 21 11 10 46 46 H 1.08994 * 113.61510 * 139.97755 * 21 11 10 47 47 H 1.08994 * 109.47257 * 315.44039 * 23 22 3 48 48 H 0.96700 * 113.99994 * 175.00326 * 24 23 22 49 49 H 1.48503 * 109.99953 * 299.99971 * 25 23 22 50 50 H 1.48500 * 110.00036 * 61.32103 * 25 23 22 51 51 H 1.08003 * 119.97577 * 180.02562 * 26 22 3 52 52 H 1.07991 * 119.98059 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2011 1.2008 0.0000 4 8 1.5230 2.3788 -0.0005 5 16 1.3674 3.0030 -1.3799 6 8 0.9454 4.3341 -1.1167 7 8 2.6064 2.7412 -2.0247 8 6 0.0317 2.0538 -2.1582 9 1 0.1711 0.9764 -2.0699 10 6 -1.3752 2.5298 -1.7596 11 6 -1.7814 2.3036 -3.2255 12 1 -2.4425 3.0754 -3.6194 13 7 -2.2628 0.9474 -3.5004 14 6 -3.5740 0.7304 -3.7242 15 8 -4.3568 1.6593 -3.6984 16 8 -4.0164 -0.5159 -3.9773 17 6 -5.4408 -0.6753 -4.2094 18 6 -5.8572 0.1626 -5.4199 19 6 -5.7521 -2.1491 -4.4772 20 6 -6.2142 -0.2073 -2.9748 21 6 -0.3018 2.5169 -3.5863 22 6 3.5885 1.1980 -0.0005 23 6 4.3453 2.5013 -0.0011 24 8 4.2920 3.0835 1.3028 25 14 6.1211 2.1880 -0.4693 26 6 4.2757 -0.0001 -0.0005 27 6 3.5814 -1.1969 -0.0005 28 35 4.5248 -2.8358 0.0075 29 6 2.1982 -1.1964 -0.0005 30 1 -0.3633 -0.1230 1.0203 31 1 -0.3633 0.9452 -0.4035 32 1 -0.3634 -0.8219 -0.6168 33 1 -1.8793 1.8638 -1.0592 34 1 -1.4120 3.5749 -1.4527 35 1 -1.6380 0.2059 -3.5213 36 1 -5.3063 -0.1707 -6.2993 37 1 -6.9267 0.0433 -5.5938 38 1 -5.6356 1.2126 -5.2286 39 1 -5.4556 -2.7457 -3.6145 40 1 -6.8216 -2.2688 -4.6509 41 1 -5.2012 -2.4829 -5.3564 42 1 -5.9924 0.8426 -2.7836 43 1 -7.2835 -0.3266 -3.1492 44 1 -5.9175 -0.8043 -2.1125 45 1 -0.0451 3.5586 -3.7786 46 1 0.0607 1.8406 -4.3603 47 1 3.8942 3.1829 -0.7221 48 1 4.8221 3.8869 1.3967 49 1 6.7474 1.2599 0.5062 50 1 6.1919 1.6119 -1.8362 51 1 5.3557 -0.0028 -0.0005 52 1 1.6582 -2.1316 -0.0005 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8227984_17701012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:09:38 Heat of formation + Delta-G solvation = -132.820930 kcal Electronic energy + Delta-G solvation = -40645.442929 eV Core-core repulsion = 35367.257428 eV Total energy + Delta-G solvation = -5278.185500 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 478.063 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.82016 -42.00477 -40.54565 -39.74612 -38.62601 -38.01828 -37.90363 -37.43895 -35.39943 -34.71864 -33.99061 -33.54520 -30.66957 -28.88480 -28.37051 -28.30884 -27.55989 -27.08590 -27.03179 -24.12745 -23.86402 -22.57340 -21.86479 -21.32247 -20.89670 -19.92191 -19.46601 -19.09720 -18.86660 -18.43181 -17.85921 -17.53281 -17.22088 -17.18726 -16.75822 -16.43150 -16.04479 -15.93298 -15.52305 -15.48496 -15.38233 -15.19091 -15.12958 -14.84474 -14.50069 -14.31473 -14.16654 -14.09781 -14.01589 -13.99159 -13.75553 -13.62045 -13.47939 -13.45985 -13.35904 -13.26560 -13.15148 -12.93180 -12.87483 -12.78564 -12.56380 -12.37746 -12.26995 -12.19753 -12.09056 -12.05053 -11.91685 -11.58693 -11.42974 -11.39482 -11.15299 -10.45797 -10.35488 -10.29224 -10.03827 -5.10888 -1.36039 -0.49839 -0.36751 0.19072 0.73681 1.04377 1.09986 1.52431 1.67791 1.79246 1.81480 2.29836 2.49447 2.73661 2.91473 2.98403 3.07335 3.13381 3.40237 3.42452 3.58778 3.62793 3.64389 3.73161 3.78809 3.78987 3.93617 3.96487 4.05317 4.26529 4.32632 4.34949 4.39112 4.41940 4.46309 4.53076 4.59777 4.60524 4.61073 4.67579 4.68532 4.72307 4.76605 4.80600 4.84188 4.87545 4.88390 4.92222 5.10833 5.24205 5.25903 5.27018 5.34851 5.55226 6.31822 6.67208 7.28373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C 0.078 3.922 4 O -0.655 6.655 5 S 2.583 3.417 6 O -0.949 6.949 7 O -0.965 6.965 8 C -0.638 4.638 9 H 0.185 0.815 10 C -0.128 4.128 11 C 0.153 3.847 12 H 0.114 0.886 13 N -0.681 5.681 14 C 0.648 3.352 15 O -0.588 6.588 16 O -0.366 6.366 17 C 0.130 3.870 18 C -0.182 4.182 19 C -0.139 4.139 20 C -0.181 4.181 21 C -0.109 4.109 22 C -0.054 4.054 23 C -0.124 4.124 24 O -0.558 6.558 25 Si 0.772 3.228 26 C -0.107 4.107 27 C -0.072 4.072 28 Br -0.020 7.020 29 C -0.068 4.068 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.092 0.908 48 H 0.404 0.596 49 H -0.264 1.264 50 H -0.275 1.275 51 H 0.142 0.858 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 -4.463 -2.276 5.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C 0.036 3.964 4 O -0.614 6.614 5 S 2.683 3.317 6 O -0.947 6.947 7 O -0.964 6.964 8 C -0.749 4.749 9 H 0.202 0.798 10 C -0.168 4.168 11 C 0.047 3.953 12 H 0.132 0.868 13 N -0.341 5.341 14 C 0.402 3.598 15 O -0.479 6.479 16 O -0.280 6.280 17 C 0.093 3.907 18 C -0.239 4.239 19 C -0.196 4.196 20 C -0.238 4.238 21 C -0.148 4.148 22 C -0.057 4.057 23 C -0.232 4.232 24 O -0.368 6.368 25 Si 0.674 3.326 26 C -0.126 4.126 27 C -0.153 4.153 28 Br 0.066 6.934 29 C -0.088 4.088 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.257 0.743 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.109 0.891 48 H 0.255 0.745 49 H -0.190 1.190 50 H -0.201 1.201 51 H 0.159 0.841 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.867 -5.153 -2.121 5.640 hybrid contribution -0.631 0.057 0.053 0.636 sum -1.498 -5.096 -2.068 5.700 Atomic orbital electron populations 1.21523 0.86750 1.05590 1.06388 1.20356 0.98949 0.89715 0.97852 1.17975 0.89178 0.81468 1.07775 1.85664 1.75951 1.42370 1.57376 1.05834 0.76653 0.75687 0.73497 1.93629 1.84348 1.34391 1.82318 1.93579 1.40936 1.85556 1.76303 1.32457 1.14608 1.16700 1.11102 0.79773 1.23462 0.89366 1.04577 0.99362 1.21563 0.95265 0.83417 0.95030 0.86764 1.44211 1.04987 1.10720 1.74189 1.18262 0.83844 0.81811 0.75873 1.90935 1.55254 1.44260 1.57420 1.86310 1.29805 1.28629 1.83277 1.22333 0.74468 0.98031 0.95833 1.22490 1.03233 1.01305 0.96878 1.21895 1.03482 0.90886 1.03288 1.22485 1.01454 1.02920 0.96967 1.23176 0.94801 1.04976 0.91882 1.19676 0.92547 0.95233 0.98246 1.25461 1.13905 0.94233 0.89642 1.86435 1.74848 1.47137 1.28374 0.93935 0.74783 0.86439 0.77480 1.20965 1.00519 0.90467 1.00692 1.22073 0.95893 0.92287 1.05041 1.96858 1.75170 1.24072 1.97325 1.21345 0.91064 0.99329 0.97025 0.87885 0.90347 0.86318 0.87187 0.86425 0.74288 0.91925 0.89663 0.91599 0.91007 0.88530 0.91197 0.91584 0.89722 0.91700 0.86169 0.85925 0.89064 0.74485 1.19001 1.20075 0.84069 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.23 8.50 71.24 0.61 1.83 16 2 C -0.07 0.11 5.45 -19.77 -0.11 0.00 16 3 C 0.08 0.40 4.87 22.50 0.11 0.51 16 4 O -0.66 -3.80 8.73 -61.71 -0.54 -4.34 16 5 S 2.58 9.67 4.80 -56.49 -0.27 9.40 16 6 O -0.95 -9.40 17.27 -118.57 -2.05 -11.45 16 7 O -0.97 -6.85 13.30 -118.57 -1.58 -8.43 16 8 C -0.64 3.64 2.68 31.12 0.08 3.72 16 9 H 0.19 -1.99 5.61 -2.39 -0.01 -2.01 16 10 C -0.13 0.69 6.83 31.12 0.21 0.91 16 11 C 0.15 -0.79 4.32 45.52 0.20 -0.59 16 12 H 0.11 -0.29 7.46 -2.39 -0.02 -0.31 16 13 N -0.68 3.33 5.27 -567.60 -2.99 0.34 16 14 C 0.65 1.34 8.06 129.79 1.05 2.39 16 15 O -0.59 -4.65 11.48 19.81 0.23 -4.42 16 16 O -0.37 -0.46 9.94 -55.52 -0.55 -1.01 16 17 C 0.13 -0.01 1.13 -10.79 -0.01 -0.02 16 18 C -0.18 -0.16 8.37 71.98 0.60 0.45 16 19 C -0.14 0.63 8.85 71.98 0.64 1.27 16 20 C -0.18 -0.07 8.37 71.99 0.60 0.53 16 21 C -0.11 0.84 7.42 31.12 0.23 1.07 16 22 C -0.05 -0.42 4.57 -19.77 -0.09 -0.51 16 23 C -0.12 -0.82 2.13 71.24 0.15 -0.67 16 24 O -0.56 -3.14 12.93 -148.98 -1.93 -5.06 16 25 Si 0.77 1.44 30.14 68.60 2.07 3.51 16 26 C -0.11 -0.63 8.39 22.27 0.19 -0.44 16 27 C -0.07 -0.14 6.22 22.32 0.14 -0.01 16 28 Br -0.02 -0.02 33.70 -20.37 -0.69 -0.71 16 29 C -0.07 0.19 9.46 22.27 0.21 0.40 16 30 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H 0.08 -0.65 2.58 -2.38 -0.01 -0.65 16 32 H 0.12 -1.71 8.13 -2.39 -0.02 -1.73 16 33 H 0.11 -0.83 7.11 -2.39 -0.02 -0.85 16 34 H 0.12 -0.49 7.43 -2.39 -0.02 -0.50 16 35 H 0.42 -4.23 8.81 -92.71 -0.82 -5.05 16 36 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.07 0.39 5.88 -2.39 -0.01 0.37 16 39 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.10 -0.69 8.14 -2.38 -0.02 -0.71 16 41 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.07 0.36 5.88 -2.39 -0.01 0.35 16 43 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 46 H 0.12 -1.38 8.14 -2.39 -0.02 -1.40 16 47 H 0.09 0.68 4.68 -2.39 -0.01 0.67 16 48 H 0.40 -2.00 8.62 -74.06 -0.64 -2.64 16 49 H -0.26 -1.24 6.73 99.48 0.67 -0.57 16 50 H -0.27 -1.88 7.11 99.48 0.71 -1.17 16 51 H 0.14 0.77 4.90 -2.91 -0.01 0.76 16 52 H 0.19 -1.74 8.06 -2.92 -0.02 -1.77 16 Total: 0.00 -27.80 433.54 -3.93 -31.73 By element: Atomic # 1 Polarization: -19.96 SS G_CDS: -0.44 Total: -20.40 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.81 Total: 10.85 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -2.99 Total: 0.34 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -6.41 Total: -34.71 kcal Atomic # 14 Polarization: 1.44 SS G_CDS: 2.07 Total: 3.51 kcal Atomic # 16 Polarization: 9.67 SS G_CDS: -0.27 Total: 9.40 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -27.80 -3.93 -31.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8227984_17701012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.093 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds