Wall clock time and date at job start Fri Mar 5 2021 23:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35997 * 116.99858 * 2 1 4 4 C 1.38549 * 120.06513 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01147 * 179.97438 * 4 3 2 6 6 C 1.38205 * 120.15277 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.92984 * 180.02562 * 6 5 4 8 8 O 1.42905 * 109.46957 * 105.00007 * 7 6 5 9 9 Si 1.86300 * 109.47223 * 344.99790 * 7 6 5 10 10 C 1.38356 * 120.13846 * 359.78461 * 6 5 4 11 11 Br 1.89099 * 120.01089 * 180.23558 * 10 6 5 12 12 C 1.38611 * 119.98129 * 0.46604 * 10 6 5 13 13 O 1.36010 * 120.07240 * 179.78954 * 12 10 6 14 14 S 1.52198 * 114.00466 * 275.34919 * 13 12 10 15 15 O 1.42101 * 104.27973 * 168.06919 * 14 13 12 16 16 O 1.42109 * 104.27157 * 40.21283 * 14 13 12 17 17 C 1.81393 * 104.45149 * 284.14667 * 14 13 12 18 18 H 1.08998 * 112.85020 * 315.68087 * 17 14 13 19 19 C 1.53782 * 113.69558 * 86.94922 * 17 14 13 20 20 C 1.53779 * 87.08380 * 139.99080 * 19 17 14 21 21 H 1.08999 * 113.68693 * 89.12913 * 20 19 17 22 22 N 1.46496 * 113.61747 * 220.02041 * 20 19 17 23 23 C 1.34778 * 119.99955 * 252.50072 * 22 20 19 24 24 O 1.21508 * 119.99942 * 0.27155 * 23 22 20 25 25 O 1.34636 * 119.99736 * 179.97438 * 23 22 20 26 26 C 1.45206 * 116.99957 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.46960 * 59.99834 * 26 25 23 28 28 C 1.52995 * 109.47044 * 180.02562 * 26 25 23 29 29 C 1.53000 * 109.46784 * 300.00050 * 26 25 23 30 30 C 1.53781 * 113.61666 * 184.48895 * 17 14 13 31 31 H 1.08997 * 109.46552 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46802 * 299.99867 * 1 2 3 33 33 H 1.08993 * 109.46858 * 60.00574 * 1 2 3 34 34 H 1.08001 * 119.99685 * 359.95959 * 4 3 2 35 35 H 1.08000 * 119.92001 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47218 * 224.99823 * 7 6 5 37 37 H 0.96699 * 113.99866 * 180.02562 * 8 7 6 38 38 H 1.48494 * 110.00188 * 298.68091 * 9 7 6 39 39 H 1.48499 * 109.99960 * 60.00186 * 9 7 6 40 40 H 1.09003 * 113.61294 * 25.44164 * 19 17 14 41 41 H 1.08996 * 113.61328 * 254.54590 * 19 17 14 42 42 H 0.97005 * 119.99983 * 72.49516 * 22 20 19 43 43 H 1.08995 * 109.47122 * 60.00261 * 27 26 25 44 44 H 1.09005 * 109.46537 * 180.02562 * 27 26 25 45 45 H 1.09002 * 109.47284 * 300.00046 * 27 26 25 46 46 H 1.08996 * 109.47386 * 59.99983 * 28 26 25 47 47 H 1.09004 * 109.47011 * 180.02562 * 28 26 25 48 48 H 1.09003 * 109.46873 * 299.99535 * 28 26 25 49 49 H 1.09002 * 109.47349 * 60.00021 * 29 26 25 50 50 H 1.09005 * 109.47176 * 180.02562 * 29 26 25 51 51 H 1.09001 * 109.46870 * 300.00017 * 29 26 25 52 52 H 1.08996 * 113.61604 * 105.38298 * 30 17 14 53 53 H 1.09006 * 113.68696 * 334.48839 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3746 0.0005 5 6 1.9221 3.6061 0.0011 6 6 3.3021 3.6809 0.0016 7 6 3.9822 5.0256 0.0028 8 8 4.5079 5.2924 1.3046 9 14 2.7487 6.3458 -0.4514 10 6 4.0605 2.5237 0.0061 11 35 5.9484 2.6302 0.0136 12 6 3.4360 1.2862 0.0003 13 8 4.1797 0.1475 0.0004 14 16 4.6325 -0.2964 -1.3832 15 8 5.6019 -1.3036 -1.1284 16 8 4.9873 0.9126 -2.0403 17 6 3.1478 -1.0176 -2.1356 18 1 2.6033 -1.6717 -1.4546 19 6 2.2540 0.0111 -2.8480 20 6 2.0459 -1.0462 -3.9450 21 1 1.2004 -1.7087 -3.7600 22 7 2.0490 -0.4930 -5.3015 23 6 0.8974 -0.4059 -5.9963 24 8 -0.1441 -0.7816 -5.4957 25 8 0.9001 0.1031 -7.2428 26 6 -0.3766 0.1670 -7.9315 27 6 -1.3439 1.0423 -7.1322 28 6 -0.1754 0.7684 -9.3238 29 6 -0.9555 -1.2430 -8.0644 30 6 3.3988 -1.6405 -3.5190 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 0.2145 2.3192 0.0003 35 1 1.3334 4.5116 0.0019 36 1 4.7950 5.0224 -0.7236 37 1 4.9603 6.1438 1.3792 38 1 2.2183 6.0975 -1.8160 39 1 1.6356 6.3606 0.5314 40 1 2.7926 0.8950 -3.1899 41 1 1.3449 0.2547 -2.2981 42 1 2.8798 -0.1893 -5.6996 43 1 -0.9315 2.0468 -7.0375 44 1 -2.3025 1.0899 -7.6490 45 1 -1.4872 0.6134 -6.1404 46 1 0.5137 0.1445 -9.8931 47 1 -1.1338 0.8169 -9.8407 48 1 0.2373 1.7729 -9.2295 49 1 -1.0988 -1.6719 -7.0726 50 1 -1.9137 -1.1951 -8.5818 51 1 -0.2663 -1.8665 -8.6338 52 1 3.4139 -2.7304 -3.5109 53 1 4.2503 -1.2093 -4.0455 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8767666_14316444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:22:26 Heat of formation + Delta-G solvation = -165.216757 kcal Electronic energy + Delta-G solvation = -43825.907483 eV Core-core repulsion = 38227.635002 eV Total energy + Delta-G solvation = -5598.272481 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.063 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.79309 -41.95990 -40.60905 -40.26791 -39.41082 -38.51113 -37.93958 -37.39743 -37.21692 -35.43695 -34.20872 -33.55224 -32.29132 -30.72166 -28.71005 -28.38404 -28.32787 -27.30177 -27.11112 -26.39292 -25.02152 -23.71570 -22.87062 -21.86527 -21.49462 -20.88004 -19.90107 -19.57244 -19.23919 -18.94928 -18.63133 -18.41427 -18.18991 -17.45523 -17.40410 -17.20970 -16.77283 -16.40201 -16.26146 -16.09696 -15.82849 -15.60912 -15.42675 -15.38476 -15.28954 -14.68150 -14.49738 -14.43912 -14.27570 -14.11668 -14.04295 -13.93539 -13.74774 -13.56168 -13.44763 -13.37951 -13.29434 -13.15445 -13.14340 -12.93653 -12.89323 -12.88186 -12.65408 -12.57940 -12.54660 -12.32171 -12.29899 -12.10677 -11.97675 -11.79551 -11.52718 -11.42259 -11.38782 -11.15459 -10.34409 -10.30804 -10.18618 -9.68702 -4.92231 -1.27717 -0.48452 -0.36061 0.15385 0.78084 1.10124 1.25650 1.65212 1.66766 1.77746 1.90279 1.91377 2.29564 2.53845 2.88263 3.05010 3.10956 3.14564 3.32645 3.35931 3.37007 3.51399 3.64174 3.69034 3.71629 3.77535 3.92170 3.92787 4.13332 4.17031 4.21305 4.27992 4.30119 4.34890 4.41728 4.48743 4.50996 4.55279 4.59621 4.60862 4.65659 4.66685 4.73994 4.74845 4.80343 4.81528 4.85449 4.88039 4.96807 5.09069 5.22205 5.25206 5.32937 5.52812 5.85597 6.29467 6.88809 7.25340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.310 6.310 3 C 0.151 3.849 4 C -0.168 4.168 5 C -0.061 4.061 6 C -0.087 4.087 7 C -0.099 4.099 8 O -0.554 6.554 9 Si 0.783 3.217 10 C -0.031 4.031 11 Br -0.008 7.008 12 C 0.032 3.968 13 O -0.655 6.655 14 S 2.579 3.421 15 O -0.963 6.963 16 O -0.951 6.951 17 C -0.617 4.617 18 H 0.185 0.815 19 C -0.127 4.127 20 C 0.163 3.837 21 H 0.132 0.868 22 N -0.696 5.696 23 C 0.648 3.352 24 O -0.587 6.587 25 O -0.370 6.370 26 C 0.127 3.873 27 C -0.180 4.180 28 C -0.139 4.139 29 C -0.180 4.180 30 C -0.115 4.115 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.191 0.809 35 H 0.160 0.840 36 H 0.083 0.917 37 H 0.404 0.596 38 H -0.278 1.278 39 H -0.267 1.267 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.418 0.582 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.060 0.940 52 H 0.122 0.878 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 5.538 -3.183 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.222 6.222 3 C 0.101 3.899 4 C -0.187 4.187 5 C -0.080 4.080 6 C -0.090 4.090 7 C -0.207 4.207 8 O -0.364 6.364 9 Si 0.684 3.316 10 C -0.113 4.113 11 Br 0.079 6.921 12 C -0.013 4.013 13 O -0.613 6.613 14 S 2.678 3.322 15 O -0.962 6.962 16 O -0.950 6.950 17 C -0.728 4.728 18 H 0.203 0.797 19 C -0.166 4.166 20 C 0.058 3.942 21 H 0.149 0.851 22 N -0.355 5.355 23 C 0.401 3.599 24 O -0.477 6.477 25 O -0.285 6.285 26 C 0.091 3.909 27 C -0.237 4.237 28 C -0.196 4.196 29 C -0.237 4.237 30 C -0.155 4.155 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.208 0.792 35 H 0.177 0.823 36 H 0.101 0.899 37 H 0.255 0.745 38 H -0.204 1.204 39 H -0.194 1.194 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.255 0.745 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.117 0.883 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.079 0.921 52 H 0.140 0.860 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.266 4.872 -2.837 9.196 hybrid contribution 0.017 -1.077 0.040 1.078 sum -7.249 3.794 -2.797 8.647 Atomic orbital electron populations 1.23717 0.74642 1.07078 1.03645 1.86188 1.24705 1.24158 1.87195 1.18837 0.88682 0.87394 0.94962 1.21645 1.02813 0.89511 1.04696 1.21317 0.92675 0.99319 0.94687 1.19507 0.93627 0.93359 1.02476 1.25128 1.06485 0.99010 0.90056 1.86464 1.77642 1.44666 1.27641 0.93620 0.76441 0.84606 0.76884 1.21948 0.92785 0.93679 1.02935 1.96780 1.00183 1.98635 1.96548 1.17069 0.87046 0.81348 1.15822 1.85704 1.72026 1.45966 1.57629 1.06019 0.77437 0.75044 0.73663 1.93594 1.58213 1.61670 1.82684 1.93694 1.82359 1.43148 1.75752 1.31882 1.19030 1.12497 1.09370 0.79720 1.23455 1.00080 0.96734 0.96377 1.22377 0.99147 0.94941 0.77711 0.85058 1.44791 1.08581 1.66248 1.15857 1.18319 0.84532 0.76631 0.80385 1.90893 1.31379 1.54325 1.71125 1.86330 1.38605 1.76713 1.26840 1.22363 0.79375 0.96834 0.92330 1.22477 0.99886 0.99393 1.01950 1.21902 1.04299 1.01512 0.91930 1.22480 1.02287 0.95332 1.03636 1.23237 0.98616 1.04495 0.89136 0.85412 0.90297 0.90132 0.79170 0.82290 0.89872 0.74500 1.20433 1.19377 0.87670 0.87956 0.74510 0.92043 0.89498 0.91330 0.91292 0.88300 0.91269 0.91449 0.89487 0.92072 0.85998 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.38 113.37 1.06 1.04 16 2 O -0.31 0.75 7.41 -79.65 -0.59 0.16 16 3 C 0.15 0.19 4.90 22.56 0.11 0.30 16 4 C -0.17 0.50 9.04 22.36 0.20 0.70 16 5 C -0.06 0.01 8.65 22.27 0.19 0.20 16 6 C -0.09 -0.39 5.29 -19.84 -0.11 -0.50 16 7 C -0.10 0.00 2.01 71.24 0.14 0.14 16 8 O -0.55 0.06 12.66 -148.98 -1.89 -1.83 16 9 Si 0.78 -4.19 30.19 68.60 2.07 -2.12 16 10 C -0.03 -0.28 5.48 22.39 0.12 -0.16 16 11 Br -0.01 -0.09 29.19 -20.37 -0.59 -0.69 16 12 C 0.03 0.25 4.73 22.58 0.11 0.36 16 13 O -0.65 -6.81 9.26 -60.68 -0.56 -7.37 16 14 S 2.58 22.08 5.02 -56.49 -0.28 21.79 16 15 O -0.96 -15.42 18.09 -118.57 -2.15 -17.57 16 16 O -0.95 -9.81 13.20 -118.57 -1.57 -11.37 16 17 C -0.62 0.69 3.19 31.12 0.10 0.79 16 18 H 0.19 -0.89 7.57 -2.39 -0.02 -0.91 16 19 C -0.13 0.32 6.02 31.12 0.19 0.51 16 20 C 0.16 -0.49 4.24 45.52 0.19 -0.29 16 21 H 0.13 -0.34 7.47 -2.39 -0.02 -0.36 16 22 N -0.70 0.77 5.36 -567.61 -3.04 -2.27 16 23 C 0.65 2.72 8.06 129.79 1.05 3.76 16 24 O -0.59 -4.67 11.48 19.82 0.23 -4.44 16 25 O -0.37 -1.44 9.94 -55.45 -0.55 -1.99 16 26 C 0.13 0.16 1.13 -10.80 -0.01 0.15 16 27 C -0.18 -0.17 8.37 71.98 0.60 0.43 16 28 C -0.14 0.42 8.85 71.98 0.64 1.06 16 29 C -0.18 -0.24 8.37 71.98 0.60 0.36 16 30 C -0.12 0.47 7.42 31.12 0.23 0.70 16 31 H 0.13 -1.63 8.14 -2.39 -0.02 -1.65 16 32 H 0.08 -0.95 7.66 -2.39 -0.02 -0.97 16 33 H 0.08 -1.02 7.23 -2.39 -0.02 -1.04 16 34 H 0.19 -2.07 6.30 -2.91 -0.02 -2.09 16 35 H 0.16 -0.62 4.88 -2.91 -0.01 -0.63 16 36 H 0.08 -0.03 7.23 -2.39 -0.02 -0.05 16 37 H 0.40 -4.15 8.74 -74.06 -0.65 -4.80 16 38 H -0.28 0.19 7.11 99.48 0.71 0.90 16 39 H -0.27 0.52 6.74 99.48 0.67 1.19 16 40 H 0.10 -0.14 7.37 -2.39 -0.02 -0.15 16 41 H 0.10 -0.48 5.48 -2.39 -0.01 -0.49 16 42 H 0.42 -1.89 8.84 -92.70 -0.82 -2.71 16 43 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 45 H 0.07 0.36 5.87 -2.39 -0.01 0.34 16 46 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 49 H 0.07 0.39 5.89 -2.39 -0.01 0.38 16 50 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 51 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 52 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 53 H 0.11 -0.61 8.08 -2.38 -0.02 -0.63 16 Total: 0.00 -30.16 442.68 -3.96 -34.12 By element: Atomic # 1 Polarization: -15.51 SS G_CDS: -0.46 Total: -15.98 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.42 Total: 9.55 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -3.04 Total: -2.27 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -7.07 Total: -44.40 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.07 Total: -2.12 kcal Atomic # 16 Polarization: 22.08 SS G_CDS: -0.28 Total: 21.79 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -0.59 Total: -0.69 kcal Total: -30.16 -3.96 -34.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8767666_14316444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.100 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds