Wall clock time and date at job start Fri Mar 5 2021 23:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 116.99893 * 2 1 4 4 C 1.38546 * 120.06749 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01302 * 179.97438 * 4 3 2 6 6 C 1.38203 * 120.15200 * 359.97438 * 5 4 3 7 7 C 1.50710 * 119.92829 * 180.02562 * 6 5 4 8 8 O 1.42905 * 109.46704 * 254.99787 * 7 6 5 9 9 Si 1.86292 * 109.47277 * 14.99386 * 7 6 5 10 10 C 1.38355 * 120.13942 * 359.97438 * 6 5 4 11 11 Br 1.89102 * 120.00812 * 180.02562 * 10 6 5 12 12 C 1.38598 * 119.98303 * 0.02562 * 10 6 5 13 13 O 1.36013 * 120.07511 * 180.02562 * 12 10 6 14 14 S 1.52204 * 113.99725 * 90.00335 * 13 12 10 15 15 O 1.42107 * 104.27520 * 191.07233 * 14 13 12 16 16 O 1.42097 * 104.27616 * 318.92403 * 14 13 12 17 17 C 1.81399 * 104.45151 * 75.00125 * 14 13 12 18 18 H 1.09005 * 112.84770 * 311.19210 * 17 14 13 19 19 C 1.53771 * 113.61832 * 82.50081 * 17 14 13 20 20 C 1.53780 * 87.08589 * 139.98013 * 19 17 14 21 21 H 1.08996 * 113.69127 * 220.01209 * 20 19 17 22 22 N 1.46502 * 113.61139 * 89.11404 * 20 19 17 23 23 C 1.34771 * 120.00028 * 107.50873 * 22 20 19 24 24 O 1.21521 * 119.99726 * 359.97438 * 23 22 20 25 25 O 1.34631 * 120.00433 * 179.97438 * 23 22 20 26 26 C 1.45198 * 117.00176 * 179.97438 * 25 23 22 27 27 C 1.52993 * 109.47479 * 60.00022 * 26 25 23 28 28 C 1.53004 * 109.47282 * 180.02562 * 26 25 23 29 29 C 1.53007 * 109.47215 * 299.99715 * 26 25 23 30 30 C 1.53785 * 87.07879 * 334.56697 * 20 19 17 31 31 H 1.08999 * 109.46651 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47059 * 299.99737 * 1 2 3 33 33 H 1.09000 * 109.47241 * 59.99953 * 1 2 3 34 34 H 1.07999 * 119.99240 * 0.24608 * 4 3 2 35 35 H 1.07999 * 119.91971 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46869 * 134.99640 * 7 6 5 37 37 H 0.96695 * 113.99579 * 180.02562 * 8 7 6 38 38 H 1.48496 * 110.00131 * 178.68184 * 9 7 6 39 39 H 1.48495 * 110.00345 * 300.00417 * 9 7 6 40 40 H 1.09000 * 113.61796 * 254.53067 * 19 17 14 41 41 H 1.09004 * 113.61595 * 25.43119 * 19 17 14 42 42 H 0.97005 * 120.00005 * 287.50484 * 22 20 19 43 43 H 1.09001 * 109.46934 * 59.99760 * 27 26 25 44 44 H 1.08996 * 109.47697 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.47321 * 300.00379 * 27 26 25 46 46 H 1.08996 * 109.47112 * 59.99575 * 28 26 25 47 47 H 1.08995 * 109.47445 * 179.97438 * 28 26 25 48 48 H 1.09001 * 109.46616 * 299.99925 * 28 26 25 49 49 H 1.09004 * 109.46420 * 60.00440 * 29 26 25 50 50 H 1.08996 * 109.46793 * 179.97438 * 29 26 25 51 51 H 1.08996 * 109.47308 * 300.00504 * 29 26 25 52 52 H 1.08991 * 113.61785 * 270.88572 * 30 20 19 53 53 H 1.08999 * 113.61333 * 139.97603 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3745 0.0005 5 6 1.9221 3.6061 0.0011 6 6 3.3021 3.6808 0.0016 7 6 3.9823 5.0256 0.0028 8 8 4.5089 5.2941 -1.2983 9 14 2.7485 6.3452 0.4576 10 6 4.0604 2.5236 0.0021 11 35 5.9485 2.6301 0.0036 12 6 3.4360 1.2862 0.0016 13 8 4.1797 0.1474 0.0027 14 16 4.5164 -0.3707 1.3936 15 8 5.4912 -1.3792 1.1654 16 8 4.8325 0.7989 2.1362 17 6 2.9686 -1.1047 1.9903 18 1 2.1096 -0.4470 1.8578 19 6 2.7325 -2.5384 1.4868 20 6 2.2015 -2.8610 2.8935 21 1 2.5114 -3.8377 3.2653 22 7 0.7640 -2.6239 3.0468 23 6 -0.0855 -3.6665 3.1338 24 8 0.3409 -4.8034 3.0846 25 8 -1.4066 -3.4486 3.2752 26 6 -2.2621 -4.6186 3.3618 27 6 -1.8528 -5.4613 4.5713 28 6 -3.7182 -4.1752 3.5177 29 6 -2.1171 -5.4520 2.0868 30 6 3.0748 -1.7024 3.4033 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 0.2146 2.3191 0.0050 35 1 1.3335 4.5116 0.0011 36 1 4.7944 5.0214 0.7298 37 1 4.9620 6.1452 -1.3712 38 1 3.4140 7.6722 0.4934 39 1 1.6361 6.3613 -0.5259 40 1 1.9739 -2.6081 0.7072 41 1 3.6504 -3.0693 1.2342 42 1 0.4236 -1.7163 3.0858 43 1 -1.9561 -4.8676 5.4795 44 1 -2.4953 -6.3394 4.6366 45 1 -0.8156 -5.7772 4.4598 46 1 -4.0095 -3.5750 2.6558 47 1 -4.3605 -5.0535 3.5823 48 1 -3.8218 -3.5813 4.4258 49 1 -1.0798 -5.7678 1.9754 50 1 -2.7590 -6.3304 2.1521 51 1 -2.4087 -4.8516 1.2252 52 1 4.0863 -2.0046 3.6746 53 1 2.5926 -1.0970 4.1708 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8767666_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:26:44 Heat of formation + Delta-G solvation = -165.490306 kcal Electronic energy + Delta-G solvation = -43510.550304 eV Core-core repulsion = 37912.265961 eV Total energy + Delta-G solvation = -5598.284343 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.063 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.69282 -41.95521 -40.57443 -40.21191 -39.37731 -38.44736 -37.85440 -37.35641 -37.32030 -35.34790 -33.98636 -33.48086 -32.21466 -30.64014 -28.64466 -28.34821 -28.27717 -27.27704 -27.06162 -26.37446 -24.87524 -23.90009 -22.85301 -21.75057 -21.27011 -20.78146 -19.77209 -19.62264 -19.13867 -18.79978 -18.61617 -18.55916 -17.98032 -17.55264 -17.18044 -16.96115 -16.71516 -16.65241 -16.12922 -15.96099 -15.72580 -15.59948 -15.42375 -15.33106 -15.18421 -14.57777 -14.51258 -14.36321 -14.23095 -14.10440 -14.05918 -13.90266 -13.78334 -13.61184 -13.47907 -13.32598 -13.30941 -13.16230 -13.12171 -12.90515 -12.84301 -12.64757 -12.54326 -12.51168 -12.39696 -12.31121 -12.06823 -11.96797 -11.79960 -11.71459 -11.47402 -11.38572 -11.33324 -11.12079 -10.48548 -10.30029 -10.12889 -9.61036 -4.89933 -1.17906 -0.36641 -0.26395 0.22419 0.85518 1.07143 1.25782 1.61801 1.71860 1.83669 1.93857 2.01729 2.44452 2.65855 2.90141 3.02274 3.12945 3.19611 3.47055 3.47640 3.50730 3.58374 3.76071 3.77368 3.81732 3.83406 3.88529 3.96438 4.19833 4.32624 4.34621 4.41123 4.41192 4.45563 4.49809 4.52378 4.60796 4.63280 4.63517 4.71932 4.73812 4.77857 4.79217 4.83847 4.85097 4.90616 4.91801 4.94034 5.11615 5.14505 5.28331 5.29604 5.38232 5.58176 5.94507 6.36970 6.56105 7.32648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.313 6.313 3 C 0.137 3.863 4 C -0.157 4.157 5 C -0.048 4.048 6 C -0.080 4.080 7 C -0.109 4.109 8 O -0.548 6.548 9 Si 0.788 3.212 10 C -0.037 4.037 11 Br -0.026 7.026 12 C 0.028 3.972 13 O -0.658 6.658 14 S 2.573 3.427 15 O -0.962 6.962 16 O -0.960 6.960 17 C -0.617 4.617 18 H 0.183 0.817 19 C -0.121 4.121 20 C 0.156 3.844 21 H 0.111 0.889 22 N -0.678 5.678 23 C 0.649 3.351 24 O -0.591 6.591 25 O -0.363 6.363 26 C 0.131 3.869 27 C -0.183 4.183 28 C -0.137 4.137 29 C -0.181 4.181 30 C -0.112 4.112 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.201 0.799 35 H 0.180 0.820 36 H 0.083 0.917 37 H 0.395 0.605 38 H -0.287 1.287 39 H -0.264 1.264 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.420 0.580 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.065 0.935 52 H 0.114 0.886 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 5.149 3.655 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.227 6.227 3 C 0.088 3.912 4 C -0.175 4.175 5 C -0.066 4.066 6 C -0.082 4.082 7 C -0.215 4.215 8 O -0.358 6.358 9 Si 0.689 3.311 10 C -0.119 4.119 11 Br 0.061 6.939 12 C -0.017 4.017 13 O -0.616 6.616 14 S 2.674 3.326 15 O -0.961 6.961 16 O -0.958 6.958 17 C -0.728 4.728 18 H 0.200 0.800 19 C -0.161 4.161 20 C 0.049 3.951 21 H 0.129 0.871 22 N -0.337 5.337 23 C 0.402 3.598 24 O -0.481 6.481 25 O -0.277 6.277 26 C 0.094 3.906 27 C -0.240 4.240 28 C -0.194 4.194 29 C -0.239 4.239 30 C -0.151 4.151 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.218 0.782 35 H 0.196 0.804 36 H 0.101 0.899 37 H 0.246 0.754 38 H -0.214 1.214 39 H -0.190 1.190 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.257 0.743 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.084 0.916 52 H 0.132 0.868 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.768 4.620 3.060 13.007 hybrid contribution 0.765 0.163 -1.065 1.321 sum -11.003 4.783 1.995 12.162 Atomic orbital electron populations 1.23739 0.74483 1.06596 1.04515 1.86225 1.24971 1.24307 1.87150 1.18966 0.88495 0.87789 0.95959 1.21750 1.03043 0.89093 1.03659 1.21516 0.91941 1.00128 0.93059 1.19363 0.94135 0.92246 1.02459 1.25376 1.06466 1.00962 0.88712 1.86561 1.76549 1.43444 1.29275 0.93924 0.76896 0.73239 0.87019 1.21926 0.92030 0.94139 1.03818 1.96776 1.01665 1.98672 1.96805 1.17138 0.87197 0.81419 1.15917 1.85718 1.72867 1.45416 1.57643 1.06160 0.78228 0.74818 0.73407 1.93592 1.57868 1.61515 1.83080 1.93646 1.83831 1.46083 1.72276 1.32224 1.21445 1.10000 1.09130 0.79973 1.23225 1.03964 0.89509 0.99403 1.21532 0.77986 1.00154 0.95382 0.87070 1.44147 1.04883 1.08235 1.76466 1.18246 0.81264 0.84537 0.75713 1.90942 1.78448 1.22325 1.56386 1.86296 1.15953 1.39851 1.85604 1.22319 0.89534 0.82574 0.96151 1.22492 1.03612 1.00833 0.97051 1.21887 0.90365 1.03478 1.03711 1.22486 1.03939 1.00862 0.96571 1.23189 1.02805 0.96571 0.92516 0.86503 0.88618 0.90249 0.78232 0.80358 0.89941 0.75405 1.21398 1.19041 0.87974 0.87615 0.74282 0.91830 0.89766 0.91764 0.90792 0.88691 0.91080 0.91811 0.89837 0.91553 0.86759 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 1.77 7.27 -79.61 -0.58 1.19 16 3 C 0.14 -0.29 5.91 22.57 0.13 -0.16 16 4 C -0.16 1.31 9.04 22.35 0.20 1.51 16 5 C -0.05 0.27 8.65 22.27 0.19 0.46 16 6 C -0.08 -0.13 5.30 -19.84 -0.11 -0.24 16 7 C -0.11 0.05 2.01 71.24 0.14 0.19 16 8 O -0.55 -1.10 12.67 -148.98 -1.89 -2.99 16 9 Si 0.79 -5.02 30.19 68.60 2.07 -2.94 16 10 C -0.04 -0.28 5.57 22.38 0.12 -0.16 16 11 Br -0.03 -0.30 29.90 -20.37 -0.61 -0.91 16 12 C 0.03 0.18 4.80 22.58 0.11 0.29 16 13 O -0.66 -6.57 9.19 -60.71 -0.56 -7.13 16 14 S 2.57 21.42 5.07 -56.49 -0.29 21.13 16 15 O -0.96 -14.90 17.27 -118.57 -2.05 -16.95 16 16 O -0.96 -10.47 14.93 -118.57 -1.77 -12.24 16 17 C -0.62 1.35 3.15 31.12 0.10 1.45 16 18 H 0.18 -1.35 5.27 -2.38 -0.01 -1.36 16 19 C -0.12 0.16 7.44 31.12 0.23 0.39 16 20 C 0.16 -0.45 4.32 45.52 0.20 -0.26 16 21 H 0.11 -0.02 7.46 -2.39 -0.02 -0.04 16 22 N -0.68 2.97 5.27 -567.61 -2.99 -0.02 16 23 C 0.65 1.29 8.06 129.79 1.05 2.34 16 24 O -0.59 -5.01 11.48 19.77 0.23 -4.78 16 25 O -0.36 -0.04 9.94 -55.40 -0.55 -0.59 16 26 C 0.13 -0.11 1.13 -10.79 -0.01 -0.12 16 27 C -0.18 -0.10 8.37 71.98 0.60 0.50 16 28 C -0.14 0.80 8.85 71.98 0.64 1.44 16 29 C -0.18 0.01 8.37 71.98 0.60 0.61 16 30 C -0.11 0.58 7.42 31.12 0.23 0.81 16 31 H 0.12 -1.74 8.14 -2.39 -0.02 -1.76 16 32 H 0.10 -1.87 7.66 -2.39 -0.02 -1.89 16 33 H 0.08 -1.25 7.67 -2.39 -0.02 -1.27 16 34 H 0.20 -3.50 6.30 -2.91 -0.02 -3.52 16 35 H 0.18 -2.06 4.88 -2.91 -0.01 -2.07 16 36 H 0.08 -0.03 7.22 -2.39 -0.02 -0.05 16 37 H 0.40 -2.20 8.74 -74.06 -0.65 -2.85 16 38 H -0.29 0.29 7.11 99.48 0.71 1.00 16 39 H -0.26 1.04 6.74 99.48 0.67 1.71 16 40 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.11 0.11 7.43 -2.39 -0.02 0.09 16 42 H 0.42 -4.28 8.81 -92.70 -0.82 -5.10 16 43 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.06 0.39 5.88 -2.39 -0.01 0.37 16 46 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 49 H 0.06 0.36 5.88 -2.38 -0.01 0.34 16 50 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 51 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 52 H 0.11 -0.62 8.10 -2.39 -0.02 -0.64 16 53 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 Total: 0.00 -33.10 447.95 -3.90 -37.00 By element: Atomic # 1 Polarization: -20.47 SS G_CDS: -0.46 Total: -20.93 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.55 Total: 10.17 kcal Atomic # 7 Polarization: 2.97 SS G_CDS: -2.99 Total: -0.02 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -7.17 Total: -43.49 kcal Atomic # 14 Polarization: -5.02 SS G_CDS: 2.07 Total: -2.94 kcal Atomic # 16 Polarization: 21.42 SS G_CDS: -0.29 Total: 21.13 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -0.61 Total: -0.91 kcal Total: -33.10 -3.90 -37.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8767666_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.492 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds