Wall clock time and date at job start Fri Mar 5 2021 23:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46939 * 2 1 4 4 C 1.52995 * 109.47373 * 240.00058 * 2 1 3 5 5 O 1.45201 * 109.47159 * 119.99860 * 2 1 3 6 6 C 1.34626 * 117.00108 * 60.00650 * 5 2 1 7 7 O 1.21513 * 119.99942 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99831 * 179.97438 * 8 6 5 10 10 H 1.08997 * 112.85420 * 23.80069 * 9 8 6 11 11 C 1.53781 * 113.61405 * 154.99784 * 9 8 6 12 12 C 1.53786 * 87.17350 * 140.02258 * 11 9 8 13 13 H 1.08993 * 113.61491 * 89.15923 * 12 11 9 14 14 S 1.81404 * 113.61427 * 220.06370 * 12 11 9 15 15 O 1.42106 * 110.53824 * 291.62436 * 14 12 11 16 16 O 1.42104 * 110.54409 * 68.36860 * 14 12 11 17 17 O 1.52194 * 104.45026 * 180.02562 * 14 12 11 18 18 C 1.35893 * 114.00412 * 74.99814 * 17 14 12 19 19 C 1.38708 * 120.05906 * 90.00164 * 18 17 14 20 20 C 1.50700 * 120.02590 * 0.02562 * 19 18 17 21 21 O 1.42901 * 109.47239 * 180.02562 * 20 19 18 22 22 C 1.38171 * 119.94407 * 180.02562 * 19 18 17 23 23 C 1.38240 * 120.05527 * 359.97438 * 22 19 18 24 24 C 1.50707 * 119.94059 * 180.02562 * 23 22 19 25 25 O 1.42902 * 109.46976 * 65.00248 * 24 23 22 26 26 Si 1.86293 * 109.46861 * 185.00178 * 24 23 22 27 27 C 1.38279 * 120.11415 * 0.02845 * 23 22 19 28 28 C 1.38128 * 120.05882 * 359.67392 * 27 23 22 29 29 C 1.53782 * 113.68817 * 252.53351 * 9 8 6 30 30 H 1.09005 * 109.47550 * 299.99843 * 1 2 3 31 31 H 1.08996 * 109.47695 * 60.00060 * 1 2 3 32 32 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47457 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47113 * 300.00297 * 3 2 1 35 35 H 1.09005 * 109.46871 * 59.99741 * 3 2 1 36 36 H 1.09002 * 109.46975 * 300.00100 * 4 2 1 37 37 H 1.09004 * 109.46806 * 59.99626 * 4 2 1 38 38 H 1.09005 * 109.47447 * 179.97438 * 4 2 1 39 39 H 0.96990 * 120.00286 * 359.97438 * 8 6 5 40 40 H 1.09002 * 113.61445 * 254.61257 * 11 9 8 41 41 H 1.09002 * 113.61408 * 25.42988 * 11 9 8 42 42 H 1.08998 * 109.47326 * 300.00295 * 20 19 18 43 43 H 1.08995 * 109.46682 * 60.00222 * 20 19 18 44 44 H 0.96692 * 114.00155 * 179.97438 * 21 20 19 45 45 H 1.08001 * 119.96568 * 180.02562 * 22 19 18 46 46 H 1.08996 * 109.47120 * 305.00031 * 24 23 22 47 47 H 0.96697 * 113.99909 * 60.00034 * 25 24 23 48 48 H 1.48500 * 110.00244 * 58.68016 * 26 24 23 49 49 H 1.48503 * 109.99930 * 179.97438 * 26 24 23 50 50 H 1.08002 * 119.97770 * 179.97438 * 27 23 22 51 51 H 1.07998 * 120.03145 * 180.32272 * 28 27 23 52 52 H 1.08997 * 113.61668 * 334.55345 * 29 9 8 53 53 H 1.08998 * 113.61674 * 105.37854 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0673 -2.6653 2.4172 9 6 1.6733 -4.0665 2.5836 10 1 1.4210 -4.5503 1.6401 11 6 2.6462 -4.8809 3.4526 12 6 1.4100 -5.5558 4.0700 13 1 1.0856 -6.4474 3.5336 14 16 1.5433 -5.8181 5.8601 15 8 2.5322 -6.7971 6.1482 16 8 1.5198 -4.5756 6.5493 17 8 0.2311 -6.4863 6.2447 18 6 0.1499 -7.7938 5.8836 19 6 0.5812 -8.7833 6.7547 20 6 1.1401 -8.4094 8.1034 21 8 1.5125 -9.5944 8.8099 22 6 0.4981 -10.1120 6.3849 23 6 -0.0150 -10.4556 5.1481 24 6 -0.1051 -11.9057 4.7476 25 8 -1.0293 -12.5798 5.6041 26 14 -0.6910 -12.0274 2.9834 27 6 -0.4457 -9.4711 4.2778 28 6 -0.3704 -8.1417 4.6451 29 6 0.6262 -4.2868 3.6881 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4427 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7208 -1.2494 39 1 2.6268 -2.2364 3.0834 40 1 3.2761 -5.5627 2.8811 41 1 3.2119 -4.2747 4.1602 42 1 2.0168 -7.7755 7.9704 43 1 0.3840 -7.8689 8.6728 44 1 1.8815 -9.4290 9.6883 45 1 0.8335 -10.8827 7.0631 46 1 0.8775 -12.3690 4.8369 47 1 -1.9263 -12.2198 5.5758 48 1 0.2448 -11.3029 2.0863 49 1 -0.7834 -13.4524 2.5761 50 1 -0.8458 -9.7420 3.3119 51 1 -0.7117 -7.3735 3.9671 52 1 0.6385 -3.5185 4.4611 53 1 -0.3750 -4.4876 3.3068 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8845266_14316444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:31:13 Heat of formation + Delta-G solvation = -204.589540 kcal Electronic energy + Delta-G solvation = -39357.850412 eV Core-core repulsion = 34097.688602 eV Total energy + Delta-G solvation = -5260.161810 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.152 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.49248 -41.93176 -40.34450 -39.94423 -38.54161 -38.09398 -37.92432 -37.46390 -37.17060 -35.41622 -34.19142 -33.06069 -32.18533 -28.36372 -28.30961 -27.65867 -27.23564 -27.09495 -26.89678 -24.04251 -23.45689 -22.91511 -21.73489 -21.34261 -20.83604 -19.75566 -19.23296 -19.12285 -18.92677 -18.41481 -18.16523 -17.55780 -17.22735 -17.01305 -16.79001 -16.68845 -16.35061 -16.13386 -15.97581 -15.85133 -15.52747 -15.44657 -15.36252 -15.07638 -14.65194 -14.47899 -14.36698 -14.30143 -14.16155 -13.87610 -13.78201 -13.56539 -13.43955 -13.41164 -13.27709 -13.24645 -13.13250 -12.94799 -12.91083 -12.87341 -12.86652 -12.55367 -12.33687 -12.29368 -12.17635 -12.06511 -11.85372 -11.51247 -11.40440 -11.35485 -11.13341 -10.49085 -10.28963 -10.10444 -9.90233 -4.98147 -1.22756 -0.19563 0.04140 0.84343 1.13521 1.29190 1.66465 1.68516 2.01641 2.22955 2.36592 2.57869 2.83850 2.93928 3.02498 3.15346 3.40689 3.43103 3.51946 3.63899 3.64916 3.69344 3.73541 3.79458 3.84305 3.94066 4.05077 4.14922 4.21243 4.29120 4.32464 4.35219 4.41961 4.43319 4.53180 4.61528 4.63967 4.66751 4.69050 4.76730 4.76920 4.79637 4.82853 4.87359 4.90249 4.90938 5.11489 5.15136 5.20706 5.25078 5.27277 5.35862 5.55566 5.59679 6.32171 6.67297 6.76204 7.28166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.587 6.587 8 N -0.696 5.696 9 C 0.153 3.847 10 H 0.133 0.867 11 C -0.116 4.116 12 C -0.625 4.625 13 H 0.191 0.809 14 S 2.592 3.408 15 O -0.971 6.971 16 O -0.955 6.955 17 O -0.662 6.662 18 C 0.051 3.949 19 C -0.081 4.081 20 C 0.093 3.907 21 O -0.577 6.577 22 C -0.071 4.071 23 C -0.100 4.100 24 C -0.085 4.085 25 O -0.555 6.555 26 Si 0.788 3.212 27 C -0.094 4.094 28 C -0.113 4.113 29 C -0.128 4.128 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.418 0.582 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.405 0.595 45 H 0.136 0.864 46 H 0.108 0.892 47 H 0.397 0.603 48 H -0.270 1.270 49 H -0.303 1.303 50 H 0.178 0.822 51 H 0.187 0.813 52 H 0.103 0.897 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 1.864 -4.305 5.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.400 3.600 7 O -0.478 6.478 8 N -0.356 5.356 9 C 0.049 3.951 10 H 0.151 0.849 11 C -0.155 4.155 12 C -0.735 4.735 13 H 0.209 0.791 14 S 2.692 3.308 15 O -0.969 6.969 16 O -0.954 6.954 17 O -0.621 6.621 18 C 0.010 3.990 19 C -0.083 4.083 20 C 0.015 3.985 21 O -0.386 6.386 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.194 4.194 25 O -0.363 6.363 26 Si 0.692 3.308 27 C -0.111 4.111 28 C -0.132 4.132 29 C -0.168 4.168 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.256 0.744 45 H 0.153 0.847 46 H 0.125 0.875 47 H 0.247 0.753 48 H -0.196 1.196 49 H -0.231 1.231 50 H 0.194 0.806 51 H 0.204 0.796 52 H 0.122 0.878 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.335 0.939 -5.142 5.725 hybrid contribution 1.037 0.526 1.295 1.741 sum -1.298 1.465 -3.847 4.316 Atomic orbital electron populations 1.22477 0.93874 1.03914 1.03481 1.22360 0.94571 0.92487 0.81499 1.21903 1.02429 0.91090 1.04206 1.22477 1.01603 1.02389 0.97233 1.86321 1.71519 1.23393 1.47329 1.18351 0.78561 0.80783 0.82301 1.90902 1.41891 1.70818 1.44183 1.44803 1.55212 1.12292 1.23261 1.22507 0.94675 0.78630 0.99332 0.84920 1.23224 0.94300 0.98614 0.99398 1.31992 1.08810 1.09413 1.23300 0.79146 1.05550 0.72804 0.73767 0.78658 1.93623 1.60779 1.59067 1.83466 1.93618 1.84808 1.45412 1.71526 1.85664 1.62716 1.30592 1.83105 1.18040 1.07763 0.76869 0.96345 1.20033 0.98405 0.93924 0.95956 1.21160 0.99324 0.87984 0.90012 1.86354 1.85561 1.31223 1.35459 1.20815 0.97037 0.94558 0.96486 1.20777 0.97902 0.97184 0.94288 1.25451 0.97191 0.88860 1.07891 1.86512 1.23989 1.58769 1.67029 0.93802 0.87538 0.78804 0.70613 1.21261 0.98643 0.90893 1.00339 1.21677 0.98402 0.99147 0.93987 1.23455 1.00939 0.92684 0.99704 0.92044 0.89512 0.91381 0.91264 0.88315 0.91297 0.91425 0.89519 0.92028 0.74523 0.85906 0.87567 0.90915 0.90799 0.74427 0.84657 0.87497 0.75300 1.19618 1.23134 0.80561 0.79552 0.87832 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 2 C 0.13 0.20 1.13 -10.80 -0.01 0.18 16 3 C -0.14 0.39 8.85 71.98 0.64 1.02 16 4 C -0.18 -0.26 8.37 71.98 0.60 0.34 16 5 O -0.37 -1.48 9.94 -55.35 -0.55 -2.03 16 6 C 0.65 2.64 8.06 129.79 1.05 3.69 16 7 O -0.59 -4.79 11.48 19.80 0.23 -4.57 16 8 N -0.70 1.36 5.36 -567.61 -3.04 -1.68 16 9 C 0.15 -0.79 4.24 45.52 0.19 -0.59 16 10 H 0.13 -0.64 7.46 -2.39 -0.02 -0.66 16 11 C -0.12 0.87 7.41 31.12 0.23 1.10 16 12 C -0.62 4.27 4.04 31.18 0.13 4.40 16 13 H 0.19 -2.47 6.13 -2.39 -0.01 -2.48 16 14 S 2.59 5.46 5.11 -56.49 -0.29 5.17 16 15 O -0.97 -6.77 14.13 -118.57 -1.68 -8.44 16 16 O -0.96 -8.09 17.27 -118.57 -2.05 -10.13 16 17 O -0.66 -1.49 9.50 -61.44 -0.58 -2.08 16 18 C 0.05 0.07 4.78 22.51 0.11 0.18 16 19 C -0.08 -0.42 5.30 -19.77 -0.10 -0.53 16 20 C 0.09 0.52 6.72 71.24 0.48 1.00 16 21 O -0.58 -2.53 12.14 -148.98 -1.81 -4.34 16 22 C -0.07 -0.28 9.01 22.25 0.20 -0.08 16 23 C -0.10 0.16 5.35 -19.85 -0.11 0.05 16 24 C -0.09 0.20 2.80 71.24 0.20 0.40 16 25 O -0.55 0.42 12.83 -148.98 -1.91 -1.50 16 26 Si 0.79 -4.78 29.80 68.60 2.04 -2.74 16 27 C -0.09 0.64 8.66 22.25 0.19 0.83 16 28 C -0.11 0.67 8.51 22.37 0.19 0.86 16 29 C -0.13 0.78 7.45 31.18 0.23 1.01 16 30 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 31 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.07 0.41 5.88 -2.39 -0.01 0.39 16 33 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.10 -0.59 8.14 -2.38 -0.02 -0.61 16 35 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 36 H 0.07 0.40 5.88 -2.39 -0.01 0.39 16 37 H 0.09 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.06 0.06 8.14 -2.38 -0.02 0.05 16 39 H 0.42 -2.26 8.84 -92.72 -0.82 -3.08 16 40 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 41 H 0.11 -0.89 8.08 -2.39 -0.02 -0.91 16 42 H 0.07 0.52 5.93 -2.39 -0.01 0.50 16 43 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.40 -1.87 9.12 -74.06 -0.68 -2.54 16 45 H 0.14 0.89 7.00 -2.91 -0.02 0.87 16 46 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 47 H 0.40 -3.74 8.70 -74.06 -0.64 -4.39 16 48 H -0.27 0.86 7.11 99.48 0.71 1.57 16 49 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 50 H 0.18 -2.43 4.90 -2.91 -0.01 -2.45 16 51 H 0.19 -2.66 7.28 -2.91 -0.02 -2.68 16 52 H 0.10 -0.42 7.43 -2.39 -0.02 -0.44 16 53 H 0.12 -1.07 8.14 -2.39 -0.02 -1.09 16 Total: 0.00 -31.75 432.84 -5.93 -37.68 By element: Atomic # 1 Polarization: -18.43 SS G_CDS: -1.11 Total: -19.53 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 4.82 Total: 14.20 kcal Atomic # 7 Polarization: 1.36 SS G_CDS: -3.04 Total: -1.68 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -8.35 Total: -33.09 kcal Atomic # 14 Polarization: -4.78 SS G_CDS: 2.04 Total: -2.74 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -0.29 Total: 5.17 kcal Total: -31.75 -5.93 -37.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8845266_14316444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.910 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds