Wall clock time and date at job start Fri Mar 5 2021 23:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 C 1.53006 * 109.46808 * 240.00189 * 2 1 3 5 5 O 1.45200 * 109.46979 * 120.00182 * 2 1 3 6 6 C 1.34635 * 116.99990 * 59.99827 * 5 2 1 7 7 O 1.21507 * 120.00168 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99739 * 179.97438 * 6 5 2 9 9 C 1.46495 * 119.99849 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.85205 * 336.18919 * 9 8 6 11 11 C 1.53959 * 113.54179 * 107.50643 * 9 8 6 12 12 C 1.53779 * 87.02057 * 89.18381 * 11 9 8 13 13 H 1.09000 * 113.61694 * 270.77242 * 12 11 9 14 14 S 1.81403 * 113.61149 * 139.95505 * 12 11 9 15 15 O 1.42103 * 110.54161 * 329.23612 * 14 12 11 16 16 O 1.42101 * 110.54056 * 192.49088 * 14 12 11 17 17 O 1.52196 * 104.44807 * 80.86131 * 14 12 11 18 18 C 1.35899 * 113.99853 * 75.00428 * 17 14 12 19 19 C 1.38706 * 120.05966 * 89.99618 * 18 17 14 20 20 C 1.50706 * 120.02786 * 0.02562 * 19 18 17 21 21 O 1.42895 * 109.47147 * 179.72522 * 20 19 18 22 22 C 1.38169 * 119.94804 * 179.72298 * 19 18 17 23 23 C 1.38243 * 120.05216 * 0.23163 * 22 19 18 24 24 C 1.50701 * 119.94367 * 180.02562 * 23 22 19 25 25 O 1.42896 * 109.46971 * 299.99856 * 24 23 22 26 26 Si 1.86303 * 109.47081 * 180.02562 * 24 23 22 27 27 C 1.38293 * 120.11217 * 0.02562 * 23 22 19 28 28 C 1.38121 * 120.05566 * 0.02562 * 27 23 22 29 29 C 1.53778 * 87.17398 * 25.36498 * 12 11 9 30 30 H 1.08996 * 109.46810 * 300.00148 * 1 2 3 31 31 H 1.08996 * 109.46956 * 59.99855 * 1 2 3 32 32 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47296 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47013 * 299.99660 * 3 2 1 35 35 H 1.08996 * 109.47409 * 60.00219 * 3 2 1 36 36 H 1.08999 * 109.46954 * 299.99618 * 4 2 1 37 37 H 1.09000 * 109.47051 * 59.99882 * 4 2 1 38 38 H 1.08998 * 109.46691 * 180.02562 * 4 2 1 39 39 H 0.97000 * 119.99699 * 359.97438 * 8 6 5 40 40 H 1.09007 * 113.66071 * 334.65461 * 11 9 8 41 41 H 1.08998 * 113.61073 * 203.71356 * 11 9 8 42 42 H 1.09001 * 109.46953 * 299.72037 * 20 19 18 43 43 H 1.09000 * 109.47318 * 59.71635 * 20 19 18 44 44 H 0.96700 * 113.99916 * 179.97438 * 21 20 19 45 45 H 1.07994 * 119.97482 * 180.25173 * 22 19 18 46 46 H 1.08993 * 109.46971 * 59.99972 * 24 23 22 47 47 H 0.96699 * 114.00101 * 299.99984 * 25 24 23 48 48 H 1.48497 * 109.99716 * 179.97438 * 26 24 23 49 49 H 1.48498 * 109.99687 * 301.31800 * 26 24 23 50 50 H 1.07998 * 119.97059 * 179.97438 * 27 23 22 51 51 H 1.08000 * 120.02612 * 179.97438 * 28 27 23 52 52 H 1.09000 * 113.61659 * 89.15623 * 29 12 11 53 53 H 1.08998 * 113.61594 * 219.97718 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6657 2.4166 9 6 1.6748 -4.0671 2.5826 10 1 0.7603 -4.3168 2.0445 11 6 2.8259 -5.0612 2.3433 12 6 3.1511 -4.9210 3.8398 13 1 3.8474 -4.1121 4.0614 14 16 3.6137 -6.4856 4.6325 15 8 2.9513 -7.5764 4.0073 16 8 3.6198 -6.3454 6.0466 17 8 5.0789 -6.6774 4.2680 18 6 5.9301 -5.8747 4.9593 19 6 6.4669 -6.3050 6.1637 20 6 6.1072 -7.6639 6.7071 21 8 6.7866 -7.8765 7.9461 22 6 7.3366 -5.4893 6.8618 23 6 7.6682 -4.2433 6.3632 24 6 8.6175 -3.3559 7.1263 25 8 8.0749 -3.0781 8.4188 26 14 8.8568 -1.7587 6.1976 27 6 7.1301 -3.8098 5.1652 28 6 6.2594 -4.6211 4.4641 29 6 1.6762 -4.5381 4.0465 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2491 39 1 2.6283 -2.2370 3.0824 40 1 3.6076 -4.6760 1.6886 41 1 2.4895 -6.0589 2.0611 42 1 5.0307 -7.7170 6.8694 43 1 6.4052 -8.4314 5.9928 44 1 6.6012 -8.7333 8.3543 45 1 7.7580 -5.8256 7.7976 46 1 9.5774 -3.8602 7.2360 47 1 7.2189 -2.6289 8.3977 48 1 9.7905 -0.8745 6.9403 49 1 9.3905 -2.0358 4.8399 50 1 7.3904 -2.8358 4.7780 51 1 5.8392 -4.2819 3.5288 52 1 1.0250 -5.3925 4.2309 53 1 1.5310 -3.7322 4.7659 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8845266_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:38:51 Heat of formation + Delta-G solvation = -202.002559 kcal Electronic energy + Delta-G solvation = -39950.671894 eV Core-core repulsion = 34690.622264 eV Total energy + Delta-G solvation = -5260.049630 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.152 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.48107 -41.93836 -40.38483 -39.93984 -38.50183 -38.08653 -37.85618 -37.41989 -37.16344 -35.33618 -33.98414 -33.06934 -32.17033 -28.34075 -28.27070 -27.67989 -27.24726 -27.10677 -26.87987 -24.08362 -23.58491 -22.91262 -21.59988 -21.23958 -20.77756 -19.74289 -19.33717 -19.00183 -18.87956 -18.31462 -18.10986 -17.57497 -17.19043 -16.97183 -16.78940 -16.65186 -16.31776 -16.18216 -15.87777 -15.74077 -15.48146 -15.41715 -15.27330 -15.01301 -14.72487 -14.55740 -14.39177 -14.31753 -14.14507 -14.02080 -13.84784 -13.70907 -13.50166 -13.38674 -13.31729 -13.22482 -13.11678 -12.94486 -12.89722 -12.83552 -12.52182 -12.35788 -12.33160 -12.19051 -12.10502 -11.96768 -11.83184 -11.47069 -11.37338 -11.31642 -11.11335 -10.51379 -10.28411 -10.09377 -9.88607 -4.99017 -1.17876 -0.18490 0.03670 0.87529 1.09720 1.29383 1.66153 1.72818 2.01370 2.22713 2.41475 2.63036 2.87677 2.94006 3.03156 3.15645 3.40782 3.48283 3.51413 3.64185 3.70876 3.73037 3.76810 3.82508 3.86394 3.97223 4.05552 4.14678 4.28098 4.33099 4.36425 4.42473 4.43805 4.48126 4.52521 4.64067 4.64866 4.67781 4.74609 4.77720 4.79977 4.80989 4.85333 4.89886 4.91250 4.92910 5.15124 5.15970 5.20507 5.29358 5.30096 5.39260 5.59657 5.60423 6.38798 6.67153 6.77332 7.34216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.364 6.364 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.680 5.680 9 C 0.150 3.850 10 H 0.109 0.891 11 C -0.126 4.126 12 C -0.626 4.626 13 H 0.190 0.810 14 S 2.588 3.412 15 O -0.959 6.959 16 O -0.969 6.969 17 O -0.666 6.666 18 C 0.053 3.947 19 C -0.081 4.081 20 C 0.093 3.907 21 O -0.576 6.576 22 C -0.070 4.070 23 C -0.100 4.100 24 C -0.086 4.086 25 O -0.555 6.555 26 Si 0.793 3.207 27 C -0.095 4.095 28 C -0.114 4.114 29 C -0.111 4.111 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.422 0.578 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.405 0.595 45 H 0.136 0.864 46 H 0.108 0.892 47 H 0.397 0.603 48 H -0.303 1.303 49 H -0.272 1.272 50 H 0.176 0.824 51 H 0.184 0.816 52 H 0.116 0.884 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 7.574 -1.394 7.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.094 3.906 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.278 6.278 6 C 0.401 3.599 7 O -0.482 6.482 8 N -0.340 5.340 9 C 0.044 3.956 10 H 0.127 0.873 11 C -0.166 4.166 12 C -0.737 4.737 13 H 0.207 0.793 14 S 2.689 3.311 15 O -0.958 6.958 16 O -0.967 6.967 17 O -0.625 6.625 18 C 0.012 3.988 19 C -0.083 4.083 20 C 0.015 3.985 21 O -0.386 6.386 22 C -0.088 4.088 23 C -0.101 4.101 24 C -0.194 4.194 25 O -0.363 6.363 26 Si 0.697 3.303 27 C -0.112 4.112 28 C -0.133 4.133 29 C -0.150 4.150 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.260 0.740 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.256 0.744 45 H 0.154 0.846 46 H 0.125 0.875 47 H 0.247 0.753 48 H -0.231 1.231 49 H -0.198 1.198 50 H 0.193 0.807 51 H 0.201 0.799 52 H 0.134 0.866 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.731 7.401 -1.946 7.687 hybrid contribution 0.134 -1.351 0.357 1.403 sum 0.865 6.050 -1.589 6.315 Atomic orbital electron populations 1.22492 0.94220 1.03738 1.03479 1.22321 0.94291 0.92545 0.81476 1.21890 1.02606 0.90845 1.04177 1.22487 1.01788 1.02279 0.97308 1.86307 1.71359 1.23024 1.47138 1.18292 0.78480 0.80783 0.82348 1.90934 1.42064 1.71035 1.44134 1.44196 1.55131 1.11203 1.23445 1.21624 0.98458 0.78558 0.96962 0.87278 1.23364 1.00508 1.02290 0.90453 1.32216 1.09536 1.21898 1.10055 0.79260 1.05677 0.73120 0.77831 0.74477 1.93617 1.72601 1.51197 1.78352 1.93619 1.84063 1.87633 1.31418 1.85675 1.38312 1.67179 1.71295 1.18025 0.98038 0.90959 0.91813 1.20027 0.97605 0.97176 0.93539 1.21156 0.97142 0.93441 0.86745 1.86354 1.71872 1.43706 1.36629 1.20803 0.95583 0.92661 0.99755 1.20778 0.98121 0.95138 0.96068 1.25464 0.97104 1.07305 0.89561 1.86507 1.41826 1.81886 1.26100 0.93751 0.86768 0.74596 0.75181 1.21258 0.95623 1.00855 0.93481 1.21630 0.99273 0.90665 1.01755 1.23156 0.89402 1.04472 0.97967 0.91830 0.89764 0.91691 0.90915 0.88673 0.91058 0.91677 0.89811 0.91679 0.73991 0.87417 0.86983 0.90693 0.91160 0.74436 0.84627 0.87452 0.75271 1.23087 1.19844 0.80726 0.79852 0.86600 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.07 8.37 71.98 0.60 0.53 16 2 C 0.13 -0.09 1.13 -10.79 -0.01 -0.10 16 3 C -0.14 0.74 8.85 71.98 0.64 1.37 16 4 C -0.18 -0.01 8.37 71.98 0.60 0.59 16 5 O -0.36 -0.12 9.94 -55.44 -0.55 -0.68 16 6 C 0.65 0.90 8.06 129.79 1.05 1.94 16 7 O -0.59 -4.52 11.48 19.82 0.23 -4.29 16 8 N -0.68 4.09 5.26 -567.31 -2.99 1.10 16 9 C 0.15 -0.89 4.33 45.58 0.20 -0.69 16 10 H 0.11 -0.29 7.46 -2.39 -0.02 -0.30 16 11 C -0.13 0.84 7.45 31.18 0.23 1.07 16 12 C -0.63 5.12 3.85 31.12 0.12 5.24 16 13 H 0.19 -2.87 6.17 -2.39 -0.01 -2.88 16 14 S 2.59 3.90 5.09 -56.49 -0.29 3.61 16 15 O -0.96 -8.37 17.31 -118.57 -2.05 -10.42 16 16 O -0.97 -5.64 14.14 -118.57 -1.68 -7.31 16 17 O -0.67 -1.52 9.50 -61.51 -0.58 -2.10 16 18 C 0.05 0.06 4.79 22.51 0.11 0.17 16 19 C -0.08 -0.40 5.30 -19.77 -0.10 -0.51 16 20 C 0.09 0.52 6.72 71.24 0.48 1.00 16 21 O -0.58 -2.46 12.14 -148.98 -1.81 -4.27 16 22 C -0.07 -0.25 8.94 22.25 0.20 -0.05 16 23 C -0.10 0.22 5.39 -19.85 -0.11 0.11 16 24 C -0.09 0.26 2.82 71.24 0.20 0.46 16 25 O -0.56 0.68 12.76 -148.98 -1.90 -1.22 16 26 Si 0.79 -5.43 29.78 68.60 2.04 -3.39 16 27 C -0.09 0.69 8.66 22.26 0.19 0.88 16 28 C -0.11 0.72 8.50 22.37 0.19 0.91 16 29 C -0.11 0.99 7.42 31.12 0.23 1.23 16 30 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.06 0.36 5.88 -2.39 -0.01 0.35 16 33 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.06 0.34 5.88 -2.39 -0.01 0.33 16 37 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.42 -5.07 8.81 -92.71 -0.82 -5.89 16 40 H 0.11 -0.94 8.14 -2.38 -0.02 -0.96 16 41 H 0.11 -0.53 7.46 -2.39 -0.02 -0.55 16 42 H 0.08 0.51 5.93 -2.39 -0.01 0.50 16 43 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.40 -1.88 9.12 -74.06 -0.68 -2.56 16 45 H 0.14 0.85 7.00 -2.91 -0.02 0.83 16 46 H 0.11 -0.12 7.96 -2.39 -0.02 -0.14 16 47 H 0.40 -3.92 8.70 -74.06 -0.64 -4.56 16 48 H -0.30 -0.57 7.11 99.48 0.71 0.14 16 49 H -0.27 1.04 7.11 99.48 0.71 1.74 16 50 H 0.18 -2.45 4.87 -2.91 -0.01 -2.46 16 51 H 0.18 -2.65 7.26 -2.91 -0.02 -2.67 16 52 H 0.12 -1.07 8.10 -2.39 -0.02 -1.09 16 53 H 0.12 -1.62 8.14 -2.39 -0.02 -1.64 16 Total: 0.00 -32.73 432.59 -5.87 -38.60 By element: Atomic # 1 Polarization: -22.68 SS G_CDS: -1.10 Total: -23.79 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 4.81 Total: 14.16 kcal Atomic # 7 Polarization: 4.09 SS G_CDS: -2.99 Total: 1.10 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -8.35 Total: -30.29 kcal Atomic # 14 Polarization: -5.43 SS G_CDS: 2.04 Total: -3.39 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -0.29 Total: 3.61 kcal Total: -32.73 -5.87 -38.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8845266_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.402 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds