Wall clock time and date at job start Sat Mar 6 2021 00:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47427 * 2 1 4 4 C 1.52997 * 109.47117 * 239.99641 * 2 1 3 5 5 O 1.45206 * 109.47229 * 119.99678 * 2 1 3 6 6 C 1.34639 * 116.99609 * 60.00046 * 5 2 1 7 7 O 1.21513 * 119.99979 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99626 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99477 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.85384 * 23.80213 * 9 8 6 11 11 C 1.53786 * 113.61192 * 154.99969 * 9 8 6 12 12 C 1.53782 * 87.08392 * 89.11310 * 11 9 8 13 13 H 1.08997 * 113.61553 * 270.80348 * 12 11 9 14 14 S 1.81398 * 113.61541 * 139.98102 * 12 11 9 15 15 O 1.42093 * 110.54342 * 73.78453 * 14 12 11 16 16 O 1.42102 * 110.54033 * 297.03484 * 14 12 11 17 17 O 1.52197 * 104.44753 * 185.41017 * 14 12 11 18 18 C 1.36004 * 113.99954 * 285.31268 * 17 14 12 19 19 C 1.38882 * 120.03971 * 268.98279 * 18 17 14 20 20 F 1.35100 * 120.03840 * 0.02562 * 19 18 17 21 21 C 1.38336 * 119.92614 * 180.27635 * 19 18 17 22 22 C 1.50700 * 119.99598 * 179.74707 * 21 19 18 23 23 O 1.42905 * 109.47435 * 113.41832 * 22 21 19 24 24 Si 1.86299 * 109.47142 * 233.42314 * 22 21 19 25 25 C 1.38442 * 120.01040 * 359.72517 * 21 19 18 26 26 F 1.35100 * 119.96470 * 179.97438 * 25 21 19 27 27 C 1.38455 * 120.07238 * 359.97438 * 25 21 19 28 28 C 1.38193 * 120.06879 * 0.02562 * 27 25 21 29 29 C 1.53785 * 87.17117 * 25.39006 * 12 11 9 30 30 H 1.09008 * 109.46749 * 300.00503 * 1 2 3 31 31 H 1.08997 * 109.46927 * 60.00112 * 1 2 3 32 32 H 1.08992 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47778 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47138 * 300.00057 * 3 2 1 35 35 H 1.09000 * 109.47117 * 59.99579 * 3 2 1 36 36 H 1.08995 * 109.47510 * 300.00221 * 4 2 1 37 37 H 1.08997 * 109.47020 * 60.00304 * 4 2 1 38 38 H 1.09003 * 109.47448 * 179.97438 * 4 2 1 39 39 H 0.96996 * 120.00464 * 359.97438 * 8 6 5 40 40 H 1.09008 * 113.61160 * 334.56547 * 11 9 8 41 41 H 1.08998 * 113.68986 * 203.67476 * 11 9 8 42 42 H 1.09007 * 109.47086 * 353.42264 * 22 21 19 43 43 H 0.96702 * 113.99560 * 59.99881 * 23 22 21 44 44 H 1.48499 * 110.00383 * 63.73242 * 24 22 21 45 45 H 1.48509 * 109.99831 * 185.05382 * 24 22 21 46 46 H 1.07999 * 119.96532 * 180.02562 * 27 25 21 47 47 H 1.07994 * 120.00297 * 179.97438 * 28 27 25 48 48 H 1.09002 * 113.61187 * 89.15589 * 29 12 11 49 49 H 1.09000 * 113.61351 * 220.05934 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0672 -2.6653 2.4173 9 6 1.6731 -4.0665 2.5837 10 1 1.4207 -4.5502 1.6402 11 6 2.6460 -4.8810 3.4527 12 6 1.8052 -4.4449 4.6643 13 1 2.1353 -3.5067 5.1100 14 16 1.5607 -5.7595 5.8901 15 8 2.7566 -5.9864 6.6231 16 8 0.8324 -6.8403 5.3237 17 8 0.6048 -5.1557 6.9089 18 6 1.1820 -4.2436 7.7363 19 6 1.7316 -4.6510 8.9449 20 9 1.6939 -5.9539 9.2999 21 6 2.3130 -3.7203 9.7872 22 6 2.9048 -4.1599 11.1017 23 8 4.3215 -3.9748 11.0720 24 14 2.1744 -3.1440 12.4821 25 6 2.3518 -2.3854 9.4227 26 9 2.9195 -1.4772 10.2463 27 6 1.8096 -1.9799 8.2150 28 6 1.2280 -2.9069 7.3711 29 6 0.6255 -4.2830 3.6910 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1391 38 1 3.1300 -0.7209 -1.2495 39 1 2.6268 -2.2365 3.0834 40 1 3.6613 -4.4843 3.4604 41 1 2.6119 -5.9534 3.2608 42 1 2.6794 -5.2134 11.2674 43 1 4.5954 -3.0587 10.9279 44 1 0.7145 -3.3969 12.5814 45 1 2.8371 -3.4826 13.7673 46 1 1.8412 -0.9381 7.9322 47 1 0.8050 -2.5894 6.4296 48 1 0.0369 -5.1915 3.5635 49 1 0.0120 -3.4045 3.8908 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_9576490_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:09:00 Heat of formation + Delta-G solvation = -233.866099 kcal Electronic energy + Delta-G solvation = -40649.426973 eV Core-core repulsion = 34923.307496 eV Total energy + Delta-G solvation = -5726.119477 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.118 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.54737 -50.42751 -42.25488 -41.94886 -40.41792 -39.68712 -38.57719 -37.87864 -37.76152 -37.44608 -35.34327 -33.99734 -32.99755 -31.18824 -28.34019 -28.27124 -27.74924 -27.12385 -27.06618 -24.92938 -24.04369 -23.61190 -21.98977 -21.29009 -20.90788 -19.78692 -19.64361 -19.55140 -19.25952 -18.93196 -18.36963 -18.15594 -17.57911 -17.34686 -17.19497 -17.09899 -16.78660 -16.64024 -16.56355 -16.14133 -15.90205 -15.67879 -15.63645 -15.43273 -15.36509 -15.22140 -14.59294 -14.38774 -14.36970 -14.26021 -14.20261 -14.03612 -13.89951 -13.65866 -13.58552 -13.50149 -13.39339 -13.31972 -13.12104 -13.08170 -12.89846 -12.83659 -12.61032 -12.52525 -12.33663 -12.21184 -12.14610 -12.00373 -11.43490 -11.36717 -11.11668 -10.96122 -10.30192 -10.20512 -10.07605 -5.08243 -1.34482 -0.57302 -0.46570 0.70951 1.01693 1.08225 1.49256 1.72190 1.75290 1.87597 2.34508 2.37645 2.56541 2.71527 2.84860 2.95538 2.98596 3.12779 3.31858 3.40917 3.45266 3.54056 3.57924 3.73922 3.76737 3.82445 3.97166 3.98856 4.33600 4.35474 4.39626 4.40154 4.45378 4.50170 4.50948 4.56214 4.63705 4.64436 4.72033 4.76281 4.78935 4.80060 4.84796 4.91202 4.92420 5.14793 5.28488 5.30205 5.32663 5.38615 5.59888 6.37809 6.49242 7.33550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.648 3.352 7 O -0.591 6.591 8 N -0.679 5.679 9 C 0.152 3.848 10 H 0.110 0.890 11 C -0.114 4.114 12 C -0.619 4.619 13 H 0.196 0.804 14 S 2.579 3.421 15 O -0.978 6.978 16 O -0.958 6.958 17 O -0.660 6.660 18 C 0.005 3.995 19 C 0.131 3.869 20 F -0.134 7.134 21 C -0.187 4.187 22 C -0.088 4.088 23 O -0.544 6.544 24 Si 0.780 3.220 25 C 0.155 3.845 26 F -0.088 7.088 27 C -0.108 4.108 28 C -0.062 4.062 29 C -0.124 4.124 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.422 0.578 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.395 0.605 44 H -0.281 1.281 45 H -0.277 1.277 46 H 0.217 0.783 47 H 0.209 0.791 48 H 0.111 0.889 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 13.510 -2.436 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.094 3.906 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.339 5.339 9 C 0.045 3.955 10 H 0.128 0.872 11 C -0.153 4.153 12 C -0.730 4.730 13 H 0.214 0.786 14 S 2.680 3.320 15 O -0.977 6.977 16 O -0.956 6.956 17 O -0.618 6.618 18 C -0.038 4.038 19 C 0.109 3.891 20 F -0.112 7.112 21 C -0.189 4.189 22 C -0.196 4.196 23 O -0.352 6.352 24 Si 0.681 3.319 25 C 0.135 3.865 26 F -0.066 7.066 27 C -0.126 4.126 28 C -0.081 4.081 29 C -0.164 4.164 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.260 0.740 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.245 0.755 44 H -0.207 1.207 45 H -0.203 1.203 46 H 0.234 0.766 47 H 0.226 0.774 48 H 0.129 0.871 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.463 11.909 -1.634 12.030 hybrid contribution 0.222 -1.316 -0.003 1.335 sum 0.685 10.593 -1.636 10.741 Atomic orbital electron populations 1.22481 0.93953 1.03789 1.03588 1.22318 0.94445 0.92474 0.81370 1.21892 1.02467 0.90880 1.04289 1.22494 1.01674 1.02316 0.97495 1.86308 1.71430 1.23014 1.47099 1.18290 0.78524 0.80861 0.82206 1.90941 1.41976 1.70881 1.44299 1.44178 1.55129 1.11298 1.23329 1.21592 0.94738 0.79795 0.99335 0.87241 1.23191 1.00536 1.02438 0.89183 1.32214 1.09352 1.19348 1.12109 0.78633 1.05937 0.72834 0.77279 0.75924 1.93638 1.50254 1.85535 1.68252 1.93612 1.71626 1.51384 1.79026 1.85761 1.59327 1.61669 1.55071 1.18441 1.04790 0.89563 0.91013 1.17629 0.99222 0.78569 0.93674 1.91513 1.94095 1.33979 1.91649 1.20389 1.05303 0.93488 0.99749 1.25269 0.86512 1.07504 1.00286 1.86575 1.18261 1.34914 1.95418 0.94001 0.76302 0.87582 0.73993 1.17306 0.95174 0.83780 0.90261 1.91421 1.81514 1.64312 1.69368 1.21665 0.96723 1.03895 0.90335 1.21750 0.96040 0.86991 1.03329 1.23398 0.94586 1.06181 0.92237 0.91511 0.89863 0.91652 0.91183 0.88671 0.90814 0.91694 0.89776 0.91929 0.73967 0.85708 0.86769 0.87780 0.75465 1.20750 1.20346 0.76645 0.77438 0.87054 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.17 8.37 71.98 0.60 0.77 16 2 C 0.13 -0.18 1.13 -10.80 -0.01 -0.20 16 3 C -0.14 0.83 8.85 71.98 0.64 1.47 16 4 C -0.18 0.01 8.37 71.98 0.60 0.61 16 5 O -0.36 0.21 9.94 -55.49 -0.55 -0.34 16 6 C 0.65 0.22 8.06 129.79 1.05 1.27 16 7 O -0.59 -3.99 11.48 19.80 0.23 -3.76 16 8 N -0.68 4.92 5.27 -567.30 -2.99 1.93 16 9 C 0.15 -1.04 4.33 45.58 0.20 -0.84 16 10 H 0.11 -0.35 7.46 -2.39 -0.02 -0.37 16 11 C -0.11 1.03 7.42 31.12 0.23 1.26 16 12 C -0.62 5.57 3.69 31.12 0.11 5.69 16 13 H 0.20 -3.44 6.30 -2.39 -0.02 -3.45 16 14 S 2.58 8.75 5.09 -56.49 -0.29 8.46 16 15 O -0.98 -9.63 16.07 -118.57 -1.91 -11.54 16 16 O -0.96 -10.67 17.42 -118.57 -2.07 -12.73 16 17 O -0.66 -2.21 9.92 -62.69 -0.62 -2.83 16 18 C 0.00 0.00 4.80 22.52 0.11 0.11 16 19 C 0.13 0.74 6.46 22.45 0.15 0.89 16 20 F -0.13 -1.72 15.75 44.97 0.71 -1.02 16 21 C -0.19 -0.08 4.65 -19.79 -0.09 -0.17 16 22 C -0.09 -0.22 2.78 71.24 0.20 -0.02 16 23 O -0.54 -1.39 12.88 -148.98 -1.92 -3.31 16 24 Si 0.78 -0.70 30.28 68.60 2.08 1.38 16 25 C 0.16 -1.25 6.52 22.37 0.15 -1.10 16 26 F -0.09 0.98 13.52 44.97 0.61 1.59 16 27 C -0.11 1.55 10.02 22.31 0.22 1.77 16 28 C -0.06 0.71 8.47 22.35 0.19 0.90 16 29 C -0.12 1.01 7.45 31.18 0.23 1.25 16 30 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.29 16 32 H 0.06 0.28 5.88 -2.39 -0.01 0.26 16 33 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 35 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.06 0.33 5.88 -2.39 -0.01 0.32 16 37 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.42 -5.66 8.81 -92.71 -0.82 -6.48 16 40 H 0.12 -1.61 8.14 -2.38 -0.02 -1.63 16 41 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16 42 H 0.10 0.67 6.98 -2.38 -0.02 0.65 16 43 H 0.39 -2.63 7.59 -74.06 -0.56 -3.20 16 44 H -0.28 -1.17 7.11 99.48 0.71 -0.47 16 45 H -0.28 -1.43 7.11 99.48 0.71 -0.72 16 46 H 0.22 -5.07 8.06 -2.91 -0.02 -5.09 16 47 H 0.21 -4.32 7.23 -2.91 -0.02 -4.34 16 48 H 0.11 -0.64 7.54 -2.39 -0.02 -0.66 16 49 H 0.12 -1.38 8.14 -2.39 -0.02 -1.40 16 Total: 0.00 -36.18 416.31 -2.45 -38.63 By element: Atomic # 1 Polarization: -29.81 SS G_CDS: -0.30 Total: -30.10 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 4.57 Total: 13.65 kcal Atomic # 7 Polarization: 4.92 SS G_CDS: -2.99 Total: 1.93 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -6.84 Total: -34.52 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 1.32 Total: 0.57 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.08 Total: 1.38 kcal Atomic # 16 Polarization: 8.75 SS G_CDS: -0.29 Total: 8.46 kcal Total: -36.18 -2.45 -38.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_9576490_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.240 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds