Wall clock time and date at job start Sat Mar 6 2021 00:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35965 * 117.00220 * 2 1 4 4 C 1.38904 * 120.06275 * 179.97438 * 3 2 1 5 5 F 1.35103 * 120.04832 * 0.02562 * 4 3 2 6 6 C 1.38338 * 119.90065 * 179.97438 * 4 3 2 7 7 C 1.38253 * 120.03068 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.93624 * 179.97438 * 7 6 4 9 9 H 1.09002 * 112.84772 * 348.81355 * 8 7 6 10 10 C 1.53788 * 113.61119 * 120.00081 * 8 7 6 11 11 C 1.53785 * 87.07877 * 139.98474 * 10 8 7 12 12 H 1.08996 * 113.61557 * 219.93866 * 11 10 8 13 13 N 1.46498 * 113.61330 * 89.11723 * 11 10 8 14 14 S 1.65602 * 119.99711 * 145.00259 * 13 11 10 15 15 O 1.42101 * 106.40161 * 311.45547 * 14 13 11 16 16 O 1.42101 * 106.40003 * 178.53852 * 14 13 11 17 17 C 1.76200 * 107.22180 * 64.99709 * 14 13 11 18 18 C 1.38233 * 119.99834 * 89.99827 * 17 14 13 19 19 C 1.38234 * 120.00312 * 179.97438 * 18 17 14 20 20 C 1.38234 * 119.99400 * 359.97438 * 19 18 17 21 21 C 1.50707 * 119.99907 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.46442 * 65.00146 * 21 20 19 23 23 Si 1.86293 * 109.47256 * 184.99713 * 21 20 19 24 24 C 1.38236 * 120.00404 * 0.27380 * 20 19 18 25 25 C 1.38229 * 119.99922 * 269.98076 * 17 14 13 26 26 C 1.53783 * 113.61761 * 217.49883 * 8 7 6 27 27 C 1.38258 * 120.12531 * 0.23878 * 7 6 4 28 28 C 1.38182 * 120.09644 * 359.47821 * 27 7 6 29 29 H 1.08999 * 109.47347 * 300.00074 * 1 2 3 30 30 H 1.08997 * 109.47418 * 60.00171 * 1 2 3 31 31 H 1.08995 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.97794 * 180.02562 * 6 4 3 33 33 H 1.09000 * 113.60960 * 25.43527 * 10 8 7 34 34 H 1.09000 * 113.61512 * 254.53192 * 10 8 7 35 35 H 0.97001 * 119.99928 * 324.99743 * 13 11 10 36 36 H 1.08010 * 120.00188 * 359.97438 * 18 17 14 37 37 H 1.07999 * 120.00412 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.47345 * 305.00217 * 21 20 19 39 39 H 0.96700 * 114.00311 * 60.00230 * 22 21 20 40 40 H 1.48506 * 109.99973 * 180.02562 * 23 21 20 41 41 H 1.48493 * 110.00375 * 301.32185 * 23 21 20 42 42 H 1.07997 * 119.99933 * 179.72390 * 24 20 19 43 43 H 1.08000 * 120.00236 * 359.97438 * 25 17 14 44 44 H 1.09001 * 113.61087 * 105.47298 * 26 8 7 45 45 H 1.08998 * 113.61041 * 334.57462 * 26 8 7 46 46 H 1.08003 * 119.95276 * 179.72720 * 27 7 6 47 47 H 1.08004 * 120.01763 * 180.23153 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4333 1.2856 0.0005 5 9 4.1713 0.1539 0.0005 6 6 4.0579 2.5199 0.0000 7 6 3.3023 3.6777 -0.0005 8 6 3.9849 5.0212 -0.0005 9 1 5.0551 4.9522 0.1948 10 6 3.6363 5.8893 -1.2212 11 6 3.5895 7.0868 -0.2575 12 1 2.7773 7.7833 -0.4656 13 7 4.8823 7.7546 -0.0881 14 16 4.9450 9.3960 0.1224 15 8 4.1271 9.9622 -0.8924 16 8 6.3168 9.7270 0.2897 17 6 4.1557 9.7558 1.6560 18 6 4.8949 9.7843 2.8238 19 6 4.2758 10.0671 4.0270 20 6 2.9176 10.3220 4.0622 21 6 2.2425 10.6297 5.3740 22 8 2.7469 11.8626 5.8914 23 14 0.4044 10.7737 5.1077 24 6 2.1775 10.2885 2.8952 25 6 2.7975 10.0100 1.6914 26 6 3.2671 6.0770 0.8567 27 6 1.9216 3.6053 0.0044 28 6 1.2923 2.3751 -0.0009 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 5.1363 2.5791 0.0000 33 1 2.6708 5.6490 -1.6663 34 1 4.4387 5.9515 -1.9563 35 1 5.7016 7.2354 -0.0992 36 1 5.9562 9.5855 2.7962 37 1 4.8534 10.0897 4.9393 38 1 2.4451 9.8278 6.0839 39 1 2.6013 12.6219 5.3105 40 1 -0.2729 11.0777 6.3938 41 1 0.1167 11.8425 4.1177 42 1 1.1156 10.4832 2.9234 43 1 2.2201 9.9885 0.7789 44 1 3.7715 6.2908 1.7990 45 1 2.2007 5.8880 0.9796 46 1 1.3341 4.5115 0.0085 47 1 0.2137 2.3200 -0.0008 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_9824368_13421422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:21:22 Heat of formation + Delta-G solvation = -99.518748 kcal Electronic energy + Delta-G solvation = -34044.086234 eV Core-core repulsion = 29201.470053 eV Total energy + Delta-G solvation = -4842.616182 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.113 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.84232 -41.36760 -40.66415 -40.26982 -38.40889 -38.04072 -37.83910 -37.00583 -33.99692 -33.00965 -32.16249 -31.77468 -30.93212 -28.30293 -27.22804 -26.50351 -25.69691 -24.06830 -23.79983 -22.97326 -22.65004 -20.87422 -20.23524 -19.43737 -19.17259 -18.70944 -18.22929 -17.93822 -17.51107 -17.21099 -17.15143 -16.70865 -16.47786 -16.26243 -16.13024 -16.05856 -15.81199 -15.69282 -15.53631 -15.22124 -14.99229 -14.75810 -14.50720 -14.25799 -14.02961 -13.82673 -13.73110 -13.66950 -13.40620 -13.27213 -13.20981 -13.17787 -13.01770 -12.78035 -12.65041 -12.53381 -12.26283 -12.23917 -11.87985 -11.74044 -11.63843 -11.39031 -11.14618 -10.72266 -10.47533 -10.32080 -10.10302 -9.90959 -9.05955 -4.95897 -0.71536 -0.34049 0.14422 0.23200 0.23496 1.24158 1.57936 1.91936 1.95217 2.23009 2.36344 2.53447 2.74771 3.22901 3.24218 3.32493 3.52023 3.58490 3.65328 3.76456 3.80013 3.84852 3.86690 4.05804 4.09385 4.20130 4.22974 4.29187 4.31064 4.37974 4.38279 4.38992 4.46411 4.56818 4.64767 4.71811 4.81034 4.87983 4.94772 4.95338 4.97065 4.99325 5.02567 5.10777 5.18338 5.22471 5.26653 5.28552 5.50359 5.66837 5.70669 5.73775 6.08282 6.31179 6.39236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.072 3.928 4 C 0.031 3.969 5 F -0.155 7.155 6 C -0.118 4.118 7 C -0.076 4.076 8 C -0.071 4.071 9 H 0.104 0.896 10 C -0.133 4.133 11 C 0.116 3.884 12 H 0.120 0.880 13 N -1.088 6.088 14 S 2.714 3.286 15 O -0.981 6.981 16 O -0.992 6.992 17 C -0.673 4.673 18 C -0.027 4.027 19 C -0.123 4.123 20 C -0.062 4.062 21 C -0.093 4.093 22 O -0.546 6.546 23 Si 0.774 3.226 24 C -0.139 4.139 25 C -0.019 4.019 26 C -0.141 4.141 27 C -0.078 4.078 28 C -0.176 4.176 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.428 0.572 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.387 0.613 40 H -0.305 1.305 41 H -0.279 1.279 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.168 0.832 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 -1.374 0.917 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.026 3.974 4 C 0.011 3.989 5 F -0.134 7.134 6 C -0.137 4.137 7 C -0.076 4.076 8 C -0.090 4.090 9 H 0.122 0.878 10 C -0.172 4.172 11 C 0.008 3.992 12 H 0.138 0.862 13 N -0.849 5.849 14 S 2.805 3.195 15 O -0.971 6.971 16 O -0.982 6.982 17 C -0.762 4.762 18 C -0.046 4.046 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.202 4.202 22 O -0.355 6.355 23 Si 0.680 3.320 24 C -0.157 4.157 25 C -0.038 4.038 26 C -0.179 4.179 27 C -0.096 4.096 28 C -0.195 4.195 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.265 0.735 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.237 0.763 40 H -0.233 1.233 41 H -0.205 1.205 42 H 0.173 0.827 43 H 0.179 0.821 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.185 0.815 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.458 -0.775 0.866 7.548 hybrid contribution 1.035 0.229 0.712 1.277 sum -6.424 -0.546 1.578 6.637 Atomic orbital electron populations 1.23392 0.75767 1.05630 1.02819 1.86109 1.24074 1.26639 1.88867 1.19342 0.90872 0.86623 1.00568 1.17489 0.86783 0.83202 1.11419 1.91446 1.76951 1.50312 1.94691 1.21117 1.01658 0.89590 1.01310 1.19659 0.93605 0.94071 1.00314 1.21586 1.00155 0.89007 0.98229 0.87788 1.23477 1.04203 0.93355 0.96148 1.21886 0.84299 0.95135 0.97831 0.86176 1.55080 1.14898 1.26159 1.88724 1.01069 0.72247 0.72584 0.73595 1.93576 1.70774 1.76887 1.55863 1.93572 1.34413 1.82917 1.87284 1.30807 1.06189 1.19007 1.20154 1.21107 1.00202 0.92138 0.91157 1.21310 0.94622 0.99633 0.98584 1.20740 0.94725 0.95013 0.95740 1.25440 1.10412 0.89256 0.95059 1.86607 1.81574 1.17993 1.49284 0.94049 0.72004 0.88484 0.77511 1.21413 1.00991 1.01483 0.91862 1.21160 0.91995 0.91002 0.99611 1.23677 1.02837 0.93679 0.97756 1.21272 0.93871 0.98047 0.96391 1.21468 1.01491 0.90801 1.05731 0.90929 0.91012 0.87013 0.83478 0.87110 0.90476 0.73520 0.83659 0.84281 0.84955 0.76316 1.23321 1.20531 0.82652 0.82101 0.90077 0.86453 0.81480 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.89 10.36 -93.15 -0.97 -2.85 16 3 C 0.07 0.28 6.69 22.53 0.15 0.43 16 4 C 0.03 0.19 7.31 22.45 0.16 0.36 16 5 F -0.16 -1.80 17.11 44.97 0.77 -1.03 16 6 C -0.12 -0.05 9.68 22.30 0.22 0.17 16 7 C -0.08 0.37 5.29 -19.86 -0.11 0.26 16 8 C -0.07 0.64 3.80 -11.01 -0.04 0.60 16 9 H 0.10 -0.97 8.06 -2.39 -0.02 -0.99 16 10 C -0.13 1.26 7.33 31.12 0.23 1.49 16 11 C 0.12 -1.13 4.51 45.52 0.21 -0.92 16 12 H 0.12 -1.40 7.77 -2.39 -0.02 -1.42 16 13 N -1.09 7.51 5.73 -167.19 -0.96 6.55 16 14 S 2.71 -0.24 5.71 -56.49 -0.32 -0.57 16 15 O -0.98 -5.29 16.80 -128.00 -2.15 -7.44 16 16 O -0.99 -7.05 17.28 -128.00 -2.21 -9.26 16 17 C -0.67 1.44 5.95 22.27 0.13 1.57 16 18 C -0.03 0.04 9.52 22.27 0.21 0.25 16 19 C -0.12 0.27 9.69 22.27 0.22 0.49 16 20 C -0.06 0.24 5.35 -19.86 -0.11 0.13 16 21 C -0.09 0.41 2.80 71.24 0.20 0.61 16 22 O -0.55 0.14 12.83 -148.98 -1.91 -1.78 16 23 Si 0.77 -4.54 29.87 68.60 2.05 -2.49 16 24 C -0.14 0.79 8.67 22.27 0.19 0.98 16 25 C -0.02 0.09 9.52 22.27 0.21 0.30 16 26 C -0.14 1.63 7.25 31.12 0.23 1.85 16 27 C -0.08 0.54 8.61 22.26 0.19 0.73 16 28 C -0.18 0.62 9.04 22.36 0.20 0.83 16 29 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 30 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 31 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.15 -0.31 8.05 -2.91 -0.02 -0.33 16 33 H 0.11 -1.27 7.73 -2.39 -0.02 -1.29 16 34 H 0.08 -0.62 8.14 -2.39 -0.02 -0.63 16 35 H 0.43 -4.06 8.79 -96.74 -0.85 -4.91 16 36 H 0.15 -0.41 7.62 -2.91 -0.02 -0.43 16 37 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 39 H 0.39 -2.14 8.70 -74.06 -0.64 -2.78 16 40 H -0.30 -0.85 7.11 99.48 0.71 -0.14 16 41 H -0.28 0.64 7.01 99.48 0.70 1.34 16 42 H 0.16 -1.56 4.85 -2.91 -0.01 -1.57 16 43 H 0.16 -1.34 7.62 -2.91 -0.02 -1.36 16 44 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.12 -1.76 6.29 -2.39 -0.02 -1.78 16 46 H 0.17 -2.30 6.63 -2.91 -0.02 -2.32 16 47 H 0.16 -1.43 6.30 -2.91 -0.02 -1.45 16 Total: 0.00 -29.37 404.82 -2.51 -31.88 By element: Atomic # 1 Polarization: -23.77 SS G_CDS: -0.42 Total: -24.19 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 3.61 Total: 11.17 kcal Atomic # 7 Polarization: 7.51 SS G_CDS: -0.96 Total: 6.55 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -7.24 Total: -21.33 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.77 Total: -1.03 kcal Atomic # 14 Polarization: -4.54 SS G_CDS: 2.05 Total: -2.49 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -0.32 Total: -0.57 kcal Total: -29.37 -2.51 -31.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_9824368_13421422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.635 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds