Wall clock time and date at job start Sat Mar 6 2021 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35958 * 116.99511 * 2 1 4 4 C 1.38912 * 120.05987 * 180.02562 * 3 2 1 5 5 F 1.35097 * 120.04767 * 359.97438 * 4 3 2 6 6 C 1.38335 * 119.90106 * 179.97438 * 4 3 2 7 7 C 1.38251 * 120.03237 * 359.97438 * 6 4 3 8 8 C 1.50702 * 119.93611 * 180.02562 * 7 6 4 9 9 H 1.09003 * 112.84955 * 191.17268 * 8 7 6 10 10 C 1.53775 * 113.61467 * 322.48038 * 8 7 6 11 11 C 1.53784 * 87.08366 * 139.98112 * 10 8 7 12 12 H 1.08993 * 113.61593 * 220.02112 * 11 10 8 13 13 N 1.46500 * 113.68923 * 89.12654 * 11 10 8 14 14 S 1.65596 * 120.00060 * 117.47004 * 13 11 10 15 15 O 1.42098 * 106.40275 * 178.54169 * 14 13 11 16 16 O 1.42099 * 106.39999 * 311.45706 * 14 13 11 17 17 C 1.76198 * 107.21793 * 64.99770 * 14 13 11 18 18 C 1.33393 * 125.20328 * 90.00571 * 17 14 13 19 19 C 1.50698 * 122.53755 * 359.97438 * 18 17 14 20 20 O 1.42895 * 109.47309 * 75.00020 * 19 18 17 21 21 Si 1.86299 * 109.47013 * 195.00544 * 19 18 17 22 22 C 1.38423 * 114.92175 * 179.97438 * 18 17 14 23 23 C 1.33398 * 114.91718 * 359.97438 * 22 18 17 24 24 S 1.75884 * 109.59658 * 359.75576 * 23 22 18 25 25 C 1.53778 * 113.61546 * 59.97992 * 8 7 6 26 26 C 1.38264 * 120.12779 * 0.02562 * 7 6 4 27 27 C 1.38185 * 120.09170 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47694 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47321 * 60.00526 * 1 2 3 30 30 H 1.09001 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.98126 * 179.97438 * 6 4 3 32 32 H 1.08996 * 113.61784 * 254.53123 * 10 8 7 33 33 H 1.09004 * 113.61337 * 25.43313 * 10 8 7 34 34 H 0.96999 * 119.99704 * 297.46931 * 13 11 10 35 35 H 1.09001 * 109.47188 * 315.00052 * 19 18 17 36 36 H 0.96700 * 113.99553 * 60.00057 * 20 19 18 37 37 H 1.48505 * 110.00002 * 180.02562 * 21 19 18 38 38 H 1.48503 * 109.99729 * 301.31591 * 21 19 18 39 39 H 1.07991 * 122.53793 * 179.97438 * 22 18 17 40 40 H 1.08000 * 125.19237 * 180.02562 * 23 22 18 41 41 H 1.09007 * 113.61486 * 334.56919 * 25 8 7 42 42 H 1.09004 * 113.61683 * 105.46915 * 25 8 7 43 43 H 1.07991 * 119.95333 * 180.27527 * 26 7 6 44 44 H 1.07998 * 120.01184 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4332 1.2857 -0.0005 5 9 4.1713 0.1541 -0.0005 6 6 4.0577 2.5201 -0.0011 7 6 3.3021 3.6778 -0.0016 8 6 3.9847 5.0214 -0.0028 9 1 3.2979 5.8452 0.1915 10 6 5.2603 5.0650 0.8549 11 6 5.8863 5.9197 -0.2599 12 1 6.9276 5.6731 -0.4666 13 7 5.6645 7.3582 -0.0935 14 16 6.9539 8.3760 0.1162 15 8 6.4177 9.6884 0.2118 16 8 7.7654 7.7925 1.1263 17 6 7.9001 8.3319 -1.3695 18 6 7.7254 9.1395 -2.4167 19 6 6.6665 10.2114 -2.4459 20 8 7.0734 11.3056 -1.6219 21 14 6.4322 10.8054 -4.1960 22 6 8.5904 8.9184 -3.4745 23 6 9.4679 7.9315 -3.2861 24 16 9.2252 7.2221 -1.6951 25 6 4.8918 5.2505 -1.2232 26 6 1.9214 3.6054 -0.0011 27 6 1.2921 2.3751 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 5.1361 2.5793 -0.0011 32 1 5.1353 5.5993 1.7966 33 1 5.7366 4.0923 0.9789 34 1 4.7624 7.7145 -0.1061 35 1 5.7271 9.8044 -2.0716 36 1 7.9040 11.7174 -1.8970 37 1 5.3908 11.8632 -4.2383 38 1 7.7138 11.3335 -4.7289 39 1 8.5572 9.5007 -4.3834 40 1 10.2161 7.6192 -3.9996 41 1 5.2672 4.3285 -1.6674 42 1 4.4691 5.9345 -1.9592 43 1 1.3339 4.5115 -0.0060 44 1 0.2136 2.3200 0.0003 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_9824368_13652106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:21:27 Heat of formation + Delta-G solvation = -83.451359 kcal Electronic energy + Delta-G solvation = -32989.758806 eV Core-core repulsion = 28236.991605 eV Total energy + Delta-G solvation = -4752.767201 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.069 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.84040 -41.38569 -40.33404 -40.06491 -38.30314 -38.04913 -37.12470 -36.94238 -34.07647 -31.72142 -31.38746 -30.96953 -28.43766 -27.97675 -26.57593 -25.67972 -24.26923 -23.83254 -22.71105 -21.59141 -20.64605 -19.88446 -19.53151 -19.31207 -18.62942 -18.31121 -17.87694 -17.70798 -17.16240 -17.04576 -16.57851 -16.25266 -16.16863 -16.06468 -15.96192 -15.69555 -15.65794 -15.24034 -15.19972 -14.90547 -14.34771 -14.16835 -14.07611 -13.99193 -13.70097 -13.51443 -13.48840 -13.23878 -13.17036 -13.15380 -13.10284 -12.77290 -12.71945 -12.44936 -12.29163 -12.19727 -12.13115 -11.84306 -11.53439 -11.43928 -11.17293 -10.61603 -10.53384 -10.35609 -9.91999 -9.62406 -9.08384 -4.93938 -0.81113 -0.54337 0.13045 0.20845 0.33237 0.73860 1.24360 1.28577 1.59893 1.97368 1.98383 2.20932 2.51155 2.64351 3.21341 3.38651 3.43438 3.52096 3.59098 3.69064 3.72794 3.76169 3.96299 4.04272 4.08380 4.12124 4.23356 4.24990 4.29214 4.35160 4.35898 4.44517 4.54258 4.69713 4.74941 4.75941 4.88341 4.92447 4.93443 4.95711 5.05841 5.13857 5.14830 5.16875 5.18616 5.46073 5.62700 5.68216 6.05925 6.28719 6.53064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.072 3.928 4 C 0.036 3.964 5 F -0.152 7.152 6 C -0.113 4.113 7 C -0.077 4.077 8 C -0.065 4.065 9 H 0.120 0.880 10 C -0.153 4.153 11 C 0.118 3.882 12 H 0.102 0.898 13 N -1.083 6.083 14 S 2.720 3.280 15 O -0.954 6.954 16 O -0.988 6.988 17 C -0.791 4.791 18 C 0.014 3.986 19 C -0.098 4.098 20 O -0.521 6.521 21 Si 0.787 3.213 22 C -0.177 4.177 23 C -0.146 4.146 24 S 0.209 5.791 25 C -0.126 4.126 26 C -0.080 4.080 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.431 0.569 35 H 0.124 0.876 36 H 0.379 0.621 37 H -0.300 1.300 38 H -0.268 1.268 39 H 0.174 0.826 40 H 0.208 0.792 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.160 0.840 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -1.233 -7.543 8.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.026 3.974 4 C 0.016 3.984 5 F -0.131 7.131 6 C -0.132 4.132 7 C -0.078 4.078 8 C -0.083 4.083 9 H 0.138 0.862 10 C -0.193 4.193 11 C 0.010 3.990 12 H 0.120 0.880 13 N -0.845 5.845 14 S 2.807 3.193 15 O -0.944 6.944 16 O -0.978 6.978 17 C -0.994 4.994 18 C -0.005 4.005 19 C -0.208 4.208 20 O -0.328 6.328 21 Si 0.690 3.310 22 C -0.206 4.206 23 C -0.283 4.283 24 S 0.476 5.524 25 C -0.165 4.165 26 C -0.098 4.098 27 C -0.198 4.198 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.172 0.828 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.269 0.731 35 H 0.142 0.858 36 H 0.227 0.773 37 H -0.228 1.228 38 H -0.194 1.194 39 H 0.191 0.809 40 H 0.225 0.775 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.177 0.823 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.516 -1.752 -6.191 6.909 hybrid contribution -0.005 1.295 -0.384 1.350 sum -2.522 -0.457 -6.574 7.056 Atomic orbital electron populations 1.23388 0.75852 1.05660 1.02690 1.86107 1.23987 1.26542 1.88849 1.19337 0.91029 0.86467 1.00521 1.17415 0.86570 0.83267 1.11158 1.91453 1.76828 1.50161 1.94647 1.21034 1.01881 0.89227 1.01028 1.19624 0.93328 0.94311 1.00514 1.21591 0.95494 0.93604 0.97584 0.86210 1.23676 0.96334 1.01032 0.98226 1.21775 1.00478 0.78522 0.98189 0.88021 1.55104 1.22778 1.16623 1.90030 1.00991 0.73026 0.72519 0.72732 1.93691 1.78311 1.36346 1.86013 1.93582 1.70030 1.79087 1.55117 1.35522 1.21931 1.15461 1.26509 1.19258 0.95947 0.93941 0.91312 1.25503 0.97902 0.87519 1.09885 1.86888 1.44924 1.46681 1.54272 0.94169 0.78641 0.84727 0.73490 1.20519 0.97406 1.01613 1.01035 1.26598 1.02885 0.99058 0.99803 1.84457 1.25614 1.31705 1.10641 1.23466 0.95036 1.01847 0.96153 1.21304 0.94066 0.97955 0.96492 1.21438 1.01411 0.90956 1.06021 0.91235 0.91030 0.86836 0.82770 0.90806 0.88082 0.73101 0.85809 0.77317 1.22803 1.19428 0.80905 0.77532 0.87777 0.88321 0.82281 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -2.10 10.36 -93.08 -0.96 -3.06 16 3 C 0.07 0.34 6.69 22.53 0.15 0.49 16 4 C 0.04 0.22 7.31 22.45 0.16 0.38 16 5 F -0.15 -1.66 17.11 44.97 0.77 -0.89 16 6 C -0.11 -0.01 8.58 22.30 0.19 0.18 16 7 C -0.08 0.27 5.29 -19.85 -0.11 0.17 16 8 C -0.06 0.47 3.80 -11.02 -0.04 0.43 16 9 H 0.12 -1.24 8.07 -2.39 -0.02 -1.26 16 10 C -0.15 0.69 7.25 31.12 0.23 0.92 16 11 C 0.12 -0.64 4.43 45.52 0.20 -0.44 16 12 H 0.10 -0.56 8.05 -2.39 -0.02 -0.58 16 13 N -1.08 4.19 5.73 -167.20 -0.96 3.23 16 14 S 2.72 11.78 5.61 -56.49 -0.32 11.46 16 15 O -0.95 -9.52 14.29 -119.53 -1.71 -11.23 16 16 O -0.99 -11.08 17.66 -128.00 -2.26 -13.34 16 17 C -0.79 -0.83 6.54 66.72 0.44 -0.39 16 18 C 0.01 -0.02 5.13 -20.92 -0.11 -0.13 16 19 C -0.10 0.03 1.79 71.24 0.13 0.16 16 20 O -0.52 -2.78 11.12 -128.49 -1.43 -4.21 16 21 Si 0.79 -3.47 30.46 68.60 2.09 -1.38 16 22 C -0.18 0.95 8.74 21.22 0.19 1.13 16 23 C -0.15 0.95 11.23 66.72 0.75 1.70 16 24 S 0.21 -0.37 23.21 -56.49 -1.31 -1.68 16 25 C -0.13 1.14 7.33 31.12 0.23 1.36 16 26 C -0.08 0.35 9.70 22.26 0.22 0.56 16 27 C -0.18 0.28 9.04 22.36 0.20 0.48 16 28 H 0.07 -0.41 7.66 -2.39 -0.02 -0.43 16 29 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 30 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.15 -0.50 6.65 -2.91 -0.02 -0.52 16 32 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.10 -0.51 6.31 -2.38 -0.02 -0.53 16 34 H 0.43 -3.59 8.80 -96.75 -0.85 -4.44 16 35 H 0.12 -0.22 7.16 -2.39 -0.02 -0.24 16 36 H 0.38 -0.53 8.70 -74.06 -0.64 -1.17 16 37 H -0.30 -1.14 7.11 99.48 0.71 -0.44 16 38 H -0.27 0.67 6.80 99.48 0.68 1.35 16 39 H 0.17 -1.62 5.53 -2.91 -0.02 -1.64 16 40 H 0.21 -2.66 8.06 -2.91 -0.02 -2.68 16 41 H 0.10 -0.98 7.72 -2.38 -0.02 -1.00 16 42 H 0.10 -1.13 8.14 -2.38 -0.02 -1.15 16 43 H 0.16 -1.57 8.05 -2.92 -0.02 -1.59 16 44 H 0.16 -1.01 6.30 -2.91 -0.02 -1.03 16 Total: 0.00 -29.17 391.29 -2.55 -31.72 By element: Atomic # 1 Polarization: -18.31 SS G_CDS: -0.40 Total: -18.70 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 3.94 Total: 8.08 kcal Atomic # 7 Polarization: 4.19 SS G_CDS: -0.96 Total: 3.23 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -6.36 Total: -31.84 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.77 Total: -0.89 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.09 Total: -1.38 kcal Atomic # 16 Polarization: 11.41 SS G_CDS: -1.63 Total: 9.78 kcal Total: -29.17 -2.55 -31.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_9824368_13652106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.732 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds