Wall clock time and date at job start Sat Mar 6 2021 00:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 117.00149 * 2 1 4 4 C 1.38909 * 120.06470 * 180.29802 * 3 2 1 5 5 F 1.35109 * 120.04564 * 359.97438 * 4 3 2 6 6 C 1.38324 * 119.90376 * 180.25166 * 4 3 2 7 7 C 1.38260 * 120.03192 * 359.44876 * 6 4 3 8 8 C 1.50699 * 119.93579 * 180.29723 * 7 6 4 9 9 H 1.09001 * 112.85136 * 348.80681 * 8 7 6 10 10 C 1.53789 * 113.61177 * 120.00247 * 8 7 6 11 11 C 1.53781 * 87.07970 * 139.97803 * 10 8 7 12 12 H 1.08994 * 113.61448 * 219.93147 * 11 10 8 13 13 N 1.46506 * 113.61407 * 89.11649 * 11 10 8 14 14 S 1.65599 * 120.00140 * 126.17277 * 13 11 10 15 15 O 1.42097 * 106.40149 * 179.27813 * 14 13 11 16 16 O 1.42094 * 106.40241 * 312.20132 * 14 13 11 17 17 C 1.76203 * 107.21613 * 65.73743 * 14 13 11 18 18 C 1.33390 * 122.53912 * 165.46438 * 17 14 13 19 19 C 1.50703 * 125.19921 * 359.97438 * 18 17 14 20 20 O 1.42895 * 109.47432 * 50.09012 * 19 18 17 21 21 Si 1.86302 * 109.46802 * 170.08915 * 19 18 17 22 22 S 1.75884 * 109.59500 * 180.02562 * 18 17 14 23 23 C 1.75883 * 90.96910 * 359.97438 * 22 18 17 24 24 C 1.33389 * 109.59717 * 359.73528 * 23 22 18 25 25 C 1.53779 * 87.08154 * 334.56702 * 11 10 8 26 26 C 1.38256 * 120.12120 * 0.27656 * 7 6 4 27 27 C 1.38173 * 120.10203 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47076 * 300.00213 * 1 2 3 29 29 H 1.08995 * 109.47236 * 59.99979 * 1 2 3 30 30 H 1.08997 * 109.47551 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.98602 * 179.72639 * 6 4 3 32 32 H 1.08997 * 113.61128 * 254.52916 * 10 8 7 33 33 H 1.08996 * 113.61333 * 25.42783 * 10 8 7 34 34 H 0.97003 * 119.99752 * 306.17316 * 13 11 10 35 35 H 1.09005 * 109.46923 * 290.08461 * 19 18 17 36 36 H 0.96697 * 114.00364 * 184.91823 * 20 19 18 37 37 H 1.48499 * 109.99866 * 299.99922 * 21 19 18 38 38 H 1.48501 * 110.00316 * 61.31614 * 21 19 18 39 39 H 1.08000 * 125.20209 * 179.97438 * 23 22 18 40 40 H 1.07998 * 122.54325 * 180.23773 * 24 23 22 41 41 H 1.08998 * 113.61765 * 270.88213 * 25 11 10 42 42 H 1.09006 * 113.61686 * 139.98275 * 25 11 10 43 43 H 1.08009 * 119.94909 * 179.97438 * 26 7 6 44 44 H 1.07996 * 120.02098 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4333 1.2856 -0.0063 5 9 4.1713 0.1539 -0.0118 6 6 4.0579 2.5198 -0.0010 7 6 3.3023 3.6777 -0.0010 8 6 3.9851 5.0212 -0.0020 9 1 5.0554 4.9522 0.1923 10 6 3.6352 5.8890 -1.2225 11 6 3.5893 7.0867 -0.2590 12 1 2.7770 7.7831 -0.4666 13 7 4.8823 7.7546 -0.0910 14 16 5.0109 9.3859 -0.3454 15 8 6.3665 9.7263 -0.0891 16 8 4.3633 9.6514 -1.5819 17 6 4.0533 10.1849 0.8994 18 6 4.1614 11.4883 1.1615 19 6 5.0896 12.4424 0.4550 20 8 4.9363 12.2975 -0.9583 21 14 4.6763 14.1907 0.9485 22 16 3.0558 11.9228 2.4587 23 6 2.4919 10.2608 2.5750 24 6 3.1274 9.5087 1.6752 25 6 3.2680 6.0771 0.8557 26 6 1.9217 3.6052 -0.0005 27 6 1.2923 2.3752 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 5.1363 2.5790 -0.0014 32 1 4.4369 5.9510 -1.9583 33 1 2.6693 5.6486 -1.6666 34 1 5.6632 7.2413 0.1693 35 1 6.1198 12.2202 0.7335 36 1 5.5566 12.8272 -1.4776 37 1 3.2742 14.5060 0.5743 38 1 4.8624 14.3630 2.4117 39 1 1.7426 9.9046 3.2664 40 1 2.9372 8.4515 1.5633 41 1 2.2017 5.8882 0.9797 42 1 3.7733 6.2911 1.7976 43 1 1.3341 4.5115 -0.0001 44 1 0.2137 2.3201 0.0002 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_9824368_14772022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:21:31 Heat of formation + Delta-G solvation = -85.685068 kcal Electronic energy + Delta-G solvation = -32957.263969 eV Core-core repulsion = 28204.399907 eV Total energy + Delta-G solvation = -4752.864062 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.069 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.86857 -41.44057 -40.37381 -39.54910 -38.33185 -38.07195 -37.65785 -36.88562 -34.12299 -32.01214 -31.81512 -30.98179 -28.34422 -27.57362 -26.65163 -25.79598 -24.38304 -23.84499 -22.71532 -21.77706 -20.79254 -20.14884 -19.37325 -18.94849 -18.67691 -18.27557 -17.97768 -17.76156 -17.53087 -17.18266 -17.09793 -16.32516 -16.24373 -16.08762 -15.92464 -15.69700 -15.51583 -15.25798 -15.15104 -14.87626 -14.49609 -14.37368 -14.22483 -13.89976 -13.79055 -13.72584 -13.45958 -13.21428 -13.20192 -13.13141 -13.05799 -12.96997 -12.80059 -12.61683 -12.30142 -12.28621 -12.20779 -11.87279 -11.69271 -11.46448 -11.24027 -10.77435 -10.52053 -10.20089 -9.94798 -9.87043 -9.09892 -5.27348 -0.77215 -0.59773 0.10652 0.19215 0.24184 0.60953 1.00374 1.11273 1.50362 1.78421 1.92187 2.19494 2.49036 2.62672 3.04344 3.19125 3.46132 3.48928 3.54861 3.62611 3.68112 3.79464 3.95695 3.99389 4.03952 4.13363 4.17594 4.20015 4.25239 4.25617 4.34332 4.34571 4.53184 4.56992 4.68356 4.73439 4.78004 4.86874 4.88744 4.92598 5.04298 5.07862 5.11967 5.15748 5.20542 5.42796 5.60862 5.66518 6.01635 6.27433 6.61811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.073 3.927 4 C 0.033 3.967 5 F -0.154 7.154 6 C -0.116 4.116 7 C -0.077 4.077 8 C -0.068 4.068 9 H 0.108 0.892 10 C -0.141 4.141 11 C 0.110 3.890 12 H 0.113 0.887 13 N -1.090 6.090 14 S 2.733 3.267 15 O -0.981 6.981 16 O -0.966 6.966 17 C -0.666 4.666 18 C -0.082 4.082 19 C -0.105 4.105 20 O -0.561 6.561 21 Si 0.779 3.221 22 S 0.115 5.885 23 C -0.197 4.197 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.080 4.080 27 C -0.177 4.177 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.150 0.850 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.430 0.570 35 H 0.117 0.883 36 H 0.415 0.585 37 H -0.272 1.272 38 H -0.253 1.253 39 H 0.207 0.793 40 H 0.184 0.816 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.166 0.834 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 2.929 2.977 5.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.027 3.973 4 C 0.013 3.987 5 F -0.133 7.133 6 C -0.135 4.135 7 C -0.077 4.077 8 C -0.086 4.086 9 H 0.126 0.874 10 C -0.180 4.180 11 C 0.002 3.998 12 H 0.131 0.869 13 N -0.852 5.852 14 S 2.819 3.181 15 O -0.971 6.971 16 O -0.956 6.956 17 C -0.765 4.765 18 C -0.202 4.202 19 C -0.214 4.214 20 O -0.373 6.373 21 Si 0.678 3.322 22 S 0.378 5.622 23 C -0.332 4.332 24 C -0.125 4.125 25 C -0.179 4.179 26 C -0.097 4.097 27 C -0.195 4.195 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.167 0.833 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.267 0.733 35 H 0.134 0.866 36 H 0.268 0.732 37 H -0.198 1.198 38 H -0.178 1.178 39 H 0.224 0.776 40 H 0.201 0.799 41 H 0.139 0.861 42 H 0.112 0.888 43 H 0.183 0.817 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.711 4.664 3.738 7.610 hybrid contribution 0.409 -2.524 -0.039 2.557 sum -4.302 2.140 3.698 6.063 Atomic orbital electron populations 1.23396 0.75772 1.05682 1.02767 1.86109 1.24061 1.26579 1.88839 1.19340 0.90905 0.86591 1.00494 1.17466 0.86729 0.83213 1.11303 1.91451 1.76919 1.50253 1.94672 1.21122 1.01746 0.89513 1.01133 1.19628 0.93546 0.94047 1.00469 1.21552 1.00335 0.88954 0.97766 0.87363 1.23569 1.04055 0.93881 0.96487 1.21949 0.84113 0.95129 0.98591 0.86870 1.55153 1.17964 1.25563 1.86495 1.00805 0.72412 0.71826 0.73065 1.93533 1.34334 1.83087 1.86179 1.93580 1.77232 1.83991 1.40760 1.29989 1.18900 1.04316 1.23321 1.23912 1.00019 0.96016 1.00224 1.24994 1.00762 1.10135 0.85556 1.86469 1.63539 1.72981 1.14269 0.93191 0.82119 0.76144 0.80711 1.84503 1.33210 1.12736 1.31771 1.26300 1.06727 0.94367 1.05788 1.20162 0.94904 1.02626 0.94794 1.23710 1.03327 0.93095 0.97724 1.21256 0.93922 0.98031 0.96533 1.21452 1.01471 0.90817 1.05802 0.90985 0.91078 0.86894 0.83260 0.90774 0.87314 0.73284 0.86557 0.73188 1.19784 1.17759 0.77573 0.79869 0.86082 0.88838 0.81699 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -2.13 10.36 -93.06 -0.96 -3.10 16 3 C 0.07 0.35 6.69 22.53 0.15 0.50 16 4 C 0.03 0.23 7.31 22.45 0.16 0.39 16 5 F -0.15 -1.86 17.11 44.97 0.77 -1.10 16 6 C -0.12 -0.14 9.68 22.30 0.22 0.08 16 7 C -0.08 0.28 5.29 -19.86 -0.11 0.18 16 8 C -0.07 0.51 3.78 -11.01 -0.04 0.47 16 9 H 0.11 -0.92 7.99 -2.39 -0.02 -0.94 16 10 C -0.14 0.89 7.34 31.12 0.23 1.12 16 11 C 0.11 -0.72 2.80 45.52 0.13 -0.60 16 12 H 0.11 -0.81 7.50 -2.39 -0.02 -0.83 16 13 N -1.09 3.69 5.52 -167.19 -0.92 2.77 16 14 S 2.73 14.16 4.37 -56.49 -0.25 13.92 16 15 O -0.98 -9.58 17.22 -128.00 -2.20 -11.78 16 16 O -0.97 -11.35 16.82 -122.02 -2.05 -13.41 16 17 C -0.67 -2.94 5.72 21.22 0.12 -2.82 16 18 C -0.08 -0.48 5.79 24.59 0.14 -0.34 16 19 C -0.10 -0.28 2.15 71.24 0.15 -0.13 16 20 O -0.56 -2.14 10.70 -136.47 -1.46 -3.60 16 21 Si 0.78 -1.24 31.09 68.60 2.13 0.89 16 22 S 0.11 0.33 20.65 -56.49 -1.17 -0.84 16 23 C -0.20 0.38 11.23 66.72 0.75 1.13 16 24 C -0.10 0.12 9.32 21.22 0.20 0.32 16 25 C -0.14 1.49 6.20 31.12 0.19 1.69 16 26 C -0.08 0.44 8.60 22.26 0.19 0.63 16 27 C -0.18 0.42 9.04 22.36 0.20 0.62 16 28 H 0.07 -0.48 7.66 -2.39 -0.02 -0.50 16 29 H 0.07 -0.46 7.66 -2.39 -0.02 -0.47 16 30 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.15 -0.23 8.05 -2.91 -0.02 -0.26 16 32 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.11 -0.89 7.72 -2.39 -0.02 -0.90 16 34 H 0.43 -3.02 8.70 -96.74 -0.84 -3.86 16 35 H 0.12 0.03 7.71 -2.38 -0.02 0.01 16 36 H 0.41 -2.86 8.86 -74.06 -0.66 -3.52 16 37 H -0.27 -1.25 7.11 99.48 0.71 -0.55 16 38 H -0.25 -0.27 7.11 99.48 0.71 0.43 16 39 H 0.21 -1.83 8.06 -2.91 -0.02 -1.85 16 40 H 0.18 -1.49 4.85 -2.91 -0.01 -1.50 16 41 H 0.12 -1.73 6.30 -2.39 -0.02 -1.75 16 42 H 0.09 -1.10 8.12 -2.38 -0.02 -1.12 16 43 H 0.17 -1.99 6.65 -2.91 -0.02 -2.01 16 44 H 0.16 -1.21 6.30 -2.91 -0.02 -1.23 16 Total: 0.00 -31.14 387.24 -2.68 -33.82 By element: Atomic # 1 Polarization: -21.49 SS G_CDS: -0.37 Total: -21.86 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 3.80 Total: 4.28 kcal Atomic # 7 Polarization: 3.69 SS G_CDS: -0.92 Total: 2.77 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -6.68 Total: -31.88 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.77 Total: -1.10 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.13 Total: 0.89 kcal Atomic # 16 Polarization: 14.49 SS G_CDS: -1.41 Total: 13.08 kcal Total: -31.14 -2.68 -33.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_9824368_14772022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.868 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds