Wall clock time and date at job start Sat Mar 6 2021 00:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99637 * 2 1 4 4 C 1.38910 * 120.05762 * 180.02562 * 3 2 1 5 5 F 1.35102 * 120.05087 * 0.02562 * 4 3 2 6 6 C 1.38334 * 119.90207 * 179.97438 * 4 3 2 7 7 C 1.38262 * 120.03047 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.93466 * 180.02562 * 7 6 4 9 9 H 1.08998 * 112.85651 * 348.80817 * 8 7 6 10 10 C 1.53784 * 113.61538 * 120.00470 * 8 7 6 11 11 C 1.53776 * 87.08605 * 139.97948 * 10 8 7 12 12 H 1.08996 * 113.61602 * 219.93957 * 11 10 8 13 13 N 1.46497 * 113.61705 * 89.11382 * 11 10 8 14 14 S 1.65597 * 120.00068 * 145.00131 * 13 11 10 15 15 O 1.42099 * 106.40294 * 178.54460 * 14 13 11 16 16 O 1.42097 * 106.40250 * 311.46196 * 14 13 11 17 17 C 1.76196 * 107.21981 * 65.00322 * 14 13 11 18 18 C 1.33387 * 122.54101 * 90.02286 * 17 14 13 19 19 S 1.75888 * 109.59317 * 180.02562 * 18 17 14 20 20 C 1.75881 * 90.97042 * 0.02562 * 19 18 17 21 21 C 1.50704 * 125.20141 * 179.97438 * 20 19 18 22 22 O 1.42896 * 109.46929 * 244.97694 * 21 20 19 23 23 Si 1.86298 * 109.46862 * 4.97599 * 21 20 19 24 24 C 1.33383 * 109.59546 * 359.73453 * 20 19 18 25 25 C 1.53778 * 113.61392 * 217.49786 * 8 7 6 26 26 C 1.38261 * 120.12332 * 359.79232 * 7 6 4 27 27 C 1.38177 * 120.09801 * 0.46645 * 26 7 6 28 28 H 1.09003 * 109.46951 * 60.00587 * 1 2 3 29 29 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47602 * 300.00449 * 1 2 3 31 31 H 1.07998 * 119.98379 * 180.02562 * 6 4 3 32 32 H 1.09002 * 113.61224 * 254.53123 * 10 8 7 33 33 H 1.09006 * 113.61110 * 25.42684 * 10 8 7 34 34 H 0.96999 * 119.99738 * 325.00958 * 13 11 10 35 35 H 1.08003 * 125.20048 * 0.02562 * 18 17 14 36 36 H 1.08997 * 109.46703 * 124.97356 * 21 20 19 37 37 H 0.96702 * 114.00375 * 60.00163 * 22 21 20 38 38 H 1.48508 * 109.99982 * 179.97438 * 23 21 20 39 39 H 1.48498 * 110.00089 * 301.31635 * 23 21 20 40 40 H 1.08005 * 122.54393 * 180.24310 * 24 20 19 41 41 H 1.09003 * 113.61591 * 334.57127 * 25 8 7 42 42 H 1.08998 * 113.61561 * 105.47173 * 25 8 7 43 43 H 1.08003 * 119.95101 * 180.25167 * 26 7 6 44 44 H 1.08002 * 120.01936 * 179.79353 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4333 1.2856 -0.0005 5 9 4.1713 0.1540 -0.0016 6 6 4.0579 2.5199 -0.0011 7 6 3.3022 3.6778 -0.0016 8 6 3.9849 5.0212 -0.0028 9 1 5.0552 4.9525 0.1918 10 6 3.6354 5.8888 -1.2235 11 6 3.5892 7.0867 -0.2604 12 1 2.7769 7.7831 -0.4683 13 7 4.8821 7.7547 -0.0921 14 16 4.9450 9.3961 0.1175 15 8 6.3169 9.7272 0.2836 16 8 4.1264 9.9618 -0.8970 17 6 4.1568 9.7567 1.6515 18 6 4.8214 9.7983 2.8073 19 16 3.7091 10.1852 4.1137 20 6 2.3642 10.2704 2.9834 21 6 0.9368 10.5818 3.3534 22 8 0.1171 9.4411 3.0910 23 14 0.8441 11.0100 5.1641 24 6 2.8017 10.0223 1.7480 25 6 3.2676 6.0774 0.8545 26 6 1.9215 3.6053 -0.0059 27 6 1.2922 2.3752 0.0000 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 5.1362 2.5791 -0.0019 32 1 4.4373 5.9506 -1.9592 33 1 2.6695 5.6483 -1.6679 34 1 5.7014 7.2355 -0.1037 35 1 5.8806 9.6215 2.9231 36 1 0.5843 11.4266 2.7617 37 1 0.3738 8.6503 3.5848 38 1 -0.5584 11.3198 5.5416 39 1 1.3520 9.8782 5.9804 40 1 2.1476 10.0251 0.8886 41 1 2.2013 5.8885 0.9782 42 1 3.7726 6.2916 1.7963 43 1 1.3340 4.5115 -0.0105 44 1 0.2136 2.3200 -0.0001 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_9824368_15065232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:21:35 Heat of formation + Delta-G solvation = -91.747598 kcal Electronic energy + Delta-G solvation = -32758.331177 eV Core-core repulsion = 28005.204224 eV Total energy + Delta-G solvation = -4753.126953 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.069 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.88066 -41.42183 -40.33077 -39.46205 -38.39535 -38.08604 -37.60887 -37.00300 -34.03291 -31.82933 -31.80020 -30.98245 -28.35286 -27.17047 -26.58844 -25.74781 -24.88109 -23.85625 -22.70656 -21.44076 -20.65662 -20.07128 -19.40249 -19.18449 -18.65395 -17.98743 -17.86389 -17.65393 -17.50941 -17.19634 -16.90511 -16.38178 -16.32827 -16.10037 -16.00940 -15.71993 -15.51958 -15.27225 -15.06484 -14.81839 -14.32543 -14.21658 -14.15912 -13.88242 -13.81798 -13.72063 -13.46483 -13.30761 -13.23887 -13.19747 -13.07354 -12.92045 -12.81719 -12.49930 -12.34599 -12.30892 -12.23305 -11.70728 -11.56277 -11.43317 -11.20919 -10.77526 -10.46135 -10.17386 -9.96239 -9.78487 -9.11182 -5.06021 -0.76382 -0.42322 0.09026 0.17973 0.38349 0.63670 1.03552 1.20324 1.50369 1.86399 2.06794 2.18025 2.47743 2.71849 3.17906 3.22467 3.36398 3.52929 3.59884 3.64461 3.72298 3.79096 3.95230 4.00021 4.03821 4.14027 4.22355 4.24512 4.31701 4.32781 4.33558 4.51876 4.51920 4.66527 4.68431 4.76188 4.87752 4.90700 4.91453 4.94971 5.04592 5.10172 5.12932 5.15348 5.19685 5.43849 5.61420 5.65086 6.06558 6.25779 6.42255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.073 3.927 4 C 0.033 3.967 5 F -0.153 7.153 6 C -0.116 4.116 7 C -0.076 4.076 8 C -0.069 4.069 9 H 0.109 0.891 10 C -0.133 4.133 11 C 0.119 3.881 12 H 0.112 0.888 13 N -1.086 6.086 14 S 2.729 3.271 15 O -0.985 6.985 16 O -0.982 6.982 17 C -0.689 4.689 18 C -0.085 4.085 19 S 0.179 5.821 20 C -0.229 4.229 21 C -0.036 4.036 22 O -0.535 6.535 23 Si 0.710 3.290 24 C -0.052 4.052 25 C -0.140 4.140 26 C -0.080 4.080 27 C -0.178 4.178 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.429 0.571 35 H 0.201 0.799 36 H 0.136 0.864 37 H 0.388 0.612 38 H -0.275 1.275 39 H -0.256 1.256 40 H 0.156 0.844 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.162 0.838 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 1.386 3.829 5.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.027 3.973 4 C 0.013 3.987 5 F -0.132 7.132 6 C -0.134 4.134 7 C -0.077 4.077 8 C -0.087 4.087 9 H 0.127 0.873 10 C -0.172 4.172 11 C 0.011 3.989 12 H 0.130 0.870 13 N -0.847 5.847 14 S 2.818 3.182 15 O -0.976 6.976 16 O -0.972 6.972 17 C -0.791 4.791 18 C -0.224 4.224 19 S 0.443 5.557 20 C -0.347 4.347 21 C -0.148 4.148 22 O -0.344 6.344 23 Si 0.612 3.388 24 C -0.081 4.081 25 C -0.180 4.180 26 C -0.098 4.098 27 C -0.196 4.196 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.266 0.734 35 H 0.218 0.782 36 H 0.153 0.847 37 H 0.238 0.762 38 H -0.200 1.200 39 H -0.181 1.181 40 H 0.173 0.827 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.179 0.821 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.364 2.271 5.231 6.621 hybrid contribution -0.202 -2.157 -1.135 2.446 sum -3.567 0.114 4.096 5.432 Atomic orbital electron populations 1.23395 0.75799 1.05676 1.02734 1.86109 1.24030 1.26549 1.88840 1.19330 0.90935 0.86543 1.00514 1.17468 0.86693 0.83255 1.11267 1.91450 1.76882 1.50231 1.94663 1.21123 1.01754 0.89434 1.01104 1.19651 0.93463 0.94195 1.00364 1.21579 1.00292 0.88853 0.97959 0.87291 1.23470 1.04145 0.93334 0.96264 1.21798 0.84324 0.94978 0.97793 0.86990 1.55069 1.14692 1.26321 1.88661 1.00714 0.72048 0.72366 0.73113 1.93576 1.33851 1.82882 1.87243 1.93571 1.70909 1.76920 1.55821 1.29797 1.05704 1.22781 1.20771 1.26184 1.04986 0.96447 0.94772 1.84435 0.97513 1.64252 1.09479 1.25049 1.00372 1.12350 0.96893 1.24492 0.84800 0.92204 1.13303 1.86619 1.56216 1.22004 1.69532 0.94397 0.84379 0.87370 0.72684 1.19667 0.92397 0.97726 0.98278 1.23640 1.02474 0.93972 0.97866 1.21234 0.94036 0.97909 0.96641 1.21439 1.01426 0.90863 1.05878 0.91073 0.86866 0.91076 0.83137 0.90112 0.87505 0.73382 0.78220 0.84652 0.76183 1.20010 1.18074 0.82656 0.87213 0.90000 0.82054 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -2.15 10.36 -93.05 -0.96 -3.11 16 3 C 0.07 0.35 6.69 22.53 0.15 0.50 16 4 C 0.03 0.22 7.31 22.45 0.16 0.39 16 5 F -0.15 -1.81 17.11 44.97 0.77 -1.04 16 6 C -0.12 -0.10 9.68 22.30 0.22 0.12 16 7 C -0.08 0.28 5.29 -19.85 -0.11 0.18 16 8 C -0.07 0.54 3.80 -11.02 -0.04 0.50 16 9 H 0.11 -1.00 8.06 -2.39 -0.02 -1.02 16 10 C -0.13 1.05 7.33 31.12 0.23 1.28 16 11 C 0.12 -0.91 4.51 45.52 0.21 -0.70 16 12 H 0.11 -0.87 7.77 -2.39 -0.02 -0.89 16 13 N -1.09 6.71 5.73 -167.20 -0.96 5.75 16 14 S 2.73 0.82 5.77 -56.49 -0.33 0.49 16 15 O -0.99 -5.97 17.64 -128.00 -2.26 -8.23 16 16 O -0.98 -6.95 17.15 -128.00 -2.20 -9.14 16 17 C -0.69 1.43 5.86 21.22 0.12 1.56 16 18 C -0.08 0.36 10.70 66.72 0.71 1.07 16 19 S 0.18 -0.92 20.59 -56.49 -1.16 -2.08 16 20 C -0.23 0.81 5.70 24.59 0.14 0.95 16 21 C -0.04 0.15 2.96 71.24 0.21 0.36 16 22 O -0.54 1.40 12.88 -148.98 -1.92 -0.52 16 23 Si 0.71 -3.17 30.98 68.60 2.13 -1.04 16 24 C -0.05 0.10 9.59 21.22 0.20 0.30 16 25 C -0.14 1.35 7.25 31.12 0.23 1.57 16 26 C -0.08 0.40 8.59 22.26 0.19 0.59 16 27 C -0.18 0.34 9.04 22.36 0.20 0.55 16 28 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 29 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 31 H 0.15 -0.32 8.05 -2.91 -0.02 -0.35 16 32 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.11 -0.97 7.71 -2.38 -0.02 -0.99 16 34 H 0.43 -4.08 8.78 -96.75 -0.85 -4.93 16 35 H 0.20 -1.58 8.00 -2.91 -0.02 -1.60 16 36 H 0.14 -0.74 7.96 -2.39 -0.02 -0.76 16 37 H 0.39 -3.37 8.70 -74.06 -0.64 -4.02 16 38 H -0.27 -0.67 7.11 99.48 0.71 0.03 16 39 H -0.26 0.46 7.11 99.48 0.71 1.17 16 40 H 0.16 -0.34 7.96 -2.91 -0.02 -0.36 16 41 H 0.11 -1.29 6.32 -2.39 -0.02 -1.30 16 42 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.16 -1.74 6.67 -2.91 -0.02 -1.76 16 44 H 0.16 -1.10 6.30 -2.91 -0.02 -1.12 16 Total: 0.00 -26.22 398.58 -3.32 -29.54 By element: Atomic # 1 Polarization: -20.50 SS G_CDS: -0.37 Total: -20.88 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 3.94 Total: 10.26 kcal Atomic # 7 Polarization: 6.71 SS G_CDS: -0.96 Total: 5.75 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -7.34 Total: -21.00 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.77 Total: -1.04 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.13 Total: -1.04 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.49 Total: -1.59 kcal Total: -26.22 -3.32 -29.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_9824368_15065232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.209 kcal (2) G-P(sol) polarization free energy of solvation -26.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds