Wall clock time and date at job start Fri Mar 5 2021 23:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35896 * 116.99913 * 180.02562 * 8 7 6 10 10 C 1.38725 * 120.04627 * 180.02562 * 9 8 7 11 11 C 1.38170 * 119.99826 * 179.97438 * 10 9 8 12 12 C 1.38210 * 120.08102 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.95705 * 179.97438 * 12 11 10 14 14 O 1.42898 * 109.47070 * 254.99584 * 13 12 11 15 15 Si 1.86300 * 109.46655 * 134.99960 * 13 12 11 16 16 H 1.48498 * 109.47485 * 59.99974 * 15 13 12 17 17 H 1.48511 * 109.46952 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47307 * 299.99424 * 15 13 12 19 19 C 1.38517 * 120.08256 * 359.97438 * 12 11 10 20 20 F 1.35103 * 119.99625 * 180.02562 * 19 12 11 21 21 C 1.38345 * 120.00311 * 359.74546 * 19 12 11 22 22 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 30 30 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 31 31 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 32 32 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 33 33 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 34 34 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 35 35 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 36 36 H 1.08002 * 119.99623 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.96178 * 179.97438 * 11 10 9 38 38 H 1.08993 * 109.47308 * 14.99949 * 13 12 11 39 39 H 0.96696 * 114.00560 * 300.00501 * 14 13 12 40 40 H 1.08007 * 120.03788 * 180.25465 * 21 19 12 41 41 H 1.08995 * 111.07416 * 213.38000 * 22 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0610 -4.4086 -1.5203 10 6 6.6230 -5.5682 -1.0065 11 6 7.7231 -6.1341 -1.6218 12 6 8.2645 -5.5467 -2.7497 13 6 9.4647 -6.1660 -3.4183 14 8 10.6286 -5.3930 -3.1187 15 14 9.1995 -6.2002 -5.2620 16 1 9.0151 -4.8139 -5.7614 17 1 10.3825 -6.8100 -5.9210 18 1 7.9901 -7.0035 -5.5734 19 6 7.7053 -4.3894 -3.2662 20 9 8.2357 -3.8170 -4.3690 21 6 6.6003 -3.8231 -2.6562 22 6 2.5556 -1.0124 -1.4423 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 2.9328 -0.3695 2.2392 30 1 1.8196 -1.7209 1.8253 31 1 4.5681 -1.0679 0.6057 32 1 4.0203 -2.6213 1.2792 33 1 2.5392 -3.0050 -0.5833 34 1 4.1426 -2.8616 -2.5254 35 1 5.2196 -1.8841 -1.4992 36 1 6.2007 -6.0285 -0.1255 37 1 8.1604 -7.0366 -1.2211 38 1 9.6000 -7.1835 -3.0518 39 1 10.5782 -4.4745 -3.4167 40 1 6.1614 -2.9230 -3.0608 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_11680688_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:45:42 Heat of formation + Delta-G solvation = -136.644087 kcal Electronic energy + Delta-G solvation = -21970.790474 eV Core-core repulsion = 18567.739303 eV Total energy + Delta-G solvation = -3403.051171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.32209 -41.27995 -39.26121 -37.53690 -36.54447 -32.03500 -31.79838 -30.62666 -29.30787 -28.58014 -27.63322 -26.16936 -24.56783 -23.47075 -22.67069 -20.88855 -19.68845 -18.54519 -17.94716 -17.40584 -17.23389 -16.96644 -16.50357 -15.93157 -15.85316 -15.48937 -15.18773 -14.80543 -14.65970 -14.42746 -14.12122 -13.99978 -13.98954 -13.75995 -13.55796 -13.46219 -13.40986 -13.30437 -12.83648 -12.55673 -12.48010 -12.33596 -12.05138 -12.00964 -11.67956 -11.48295 -11.16284 -10.96490 -10.66869 -10.47832 -10.39962 -10.01855 -9.23502 0.02047 0.10658 1.19992 1.48341 1.53096 1.57993 1.77821 1.80607 1.99845 2.07300 2.45802 2.46767 3.07950 3.43365 3.54703 3.68091 3.68817 3.83742 3.89140 3.96181 4.12766 4.26176 4.36477 4.43972 4.49106 4.50443 4.54808 4.61452 4.62295 4.64891 4.66683 4.67595 4.86215 4.93032 5.00955 5.02861 5.06850 5.24180 5.26093 5.32579 5.36613 5.43156 5.45010 5.59012 6.26366 6.50401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.968 3.032 3 C -0.442 4.442 4 C -0.397 4.397 5 C -0.113 4.113 6 C -0.079 4.079 7 C 0.060 3.940 8 O -0.306 6.306 9 C 0.165 3.835 10 C -0.160 4.160 11 C -0.030 4.030 12 C -0.190 4.190 13 C -0.072 4.072 14 O -0.536 6.536 15 Si 0.933 3.067 16 H -0.231 1.231 17 H -0.255 1.255 18 H -0.252 1.252 19 C 0.132 3.868 20 F -0.127 7.127 21 C -0.243 4.243 22 C -0.396 4.396 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.375 0.625 40 H 0.143 0.857 41 H 0.083 0.917 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 1.399 0.901 3.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.551 4.551 4 C -0.484 4.484 5 C -0.150 4.150 6 C -0.098 4.098 7 C -0.014 4.014 8 O -0.219 6.219 9 C 0.119 3.881 10 C -0.179 4.179 11 C -0.048 4.048 12 C -0.192 4.192 13 C -0.182 4.182 14 O -0.341 6.341 15 Si 0.755 3.245 16 H -0.154 1.154 17 H -0.179 1.179 18 H -0.176 1.176 19 C 0.112 3.888 20 F -0.105 7.105 21 C -0.263 4.263 22 C -0.482 4.482 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.222 0.778 40 H 0.160 0.840 41 H 0.101 0.899 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.813 0.827 0.374 2.956 hybrid contribution 0.020 0.694 -0.153 0.710 sum -2.792 1.520 0.221 3.187 Atomic orbital electron populations 1.26018 1.19925 1.04632 1.04518 0.80494 0.67441 0.67574 0.67885 1.26014 1.06609 1.17856 1.04573 1.26665 1.03762 1.08055 1.09869 1.21923 0.98069 1.00866 0.94164 1.21529 0.95204 0.98566 0.94463 1.23175 0.96154 0.84695 0.97411 1.86137 1.41720 1.41154 1.52871 1.18761 0.86760 0.92249 0.90330 1.20590 0.98427 0.95704 1.03135 1.20753 0.93257 0.98725 0.92042 1.20212 1.01482 0.97297 1.00180 1.24839 0.84305 0.98045 1.11036 1.86531 1.37145 1.26587 1.83809 0.86181 0.81164 0.82363 0.74823 1.15360 1.17892 1.17609 1.17311 0.93693 0.92962 0.84803 1.91567 1.85156 1.84139 1.49665 1.21178 1.00451 1.04860 0.99803 1.26686 1.05364 1.05245 1.10859 0.91194 0.91052 0.91015 0.91040 0.91088 0.91124 0.90316 0.90297 0.91808 0.90938 0.89811 0.91635 0.91637 0.84084 0.83782 0.86146 0.77775 0.83961 0.89852 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.94 8.65 101.05 0.87 1.82 16 2 Si 0.97 -3.16 13.35 -169.99 -2.27 -5.43 16 3 C -0.44 0.96 8.65 101.05 0.87 1.83 16 4 C -0.40 0.70 5.95 38.72 0.23 0.93 16 5 C -0.11 0.11 5.06 -24.87 -0.13 -0.02 16 6 C -0.08 0.10 2.58 -89.07 -0.23 -0.13 16 7 C 0.06 -0.04 3.98 37.16 0.15 0.11 16 8 O -0.31 -0.40 9.90 -19.41 -0.19 -0.59 16 9 C 0.17 0.22 6.69 -39.23 -0.26 -0.04 16 10 C -0.16 -0.07 9.99 -39.43 -0.39 -0.47 16 11 C -0.03 0.00 9.66 -39.62 -0.38 -0.38 16 12 C -0.19 -0.18 4.78 -104.53 -0.50 -0.68 16 13 C -0.07 -0.03 2.81 36.01 0.10 0.07 16 14 O -0.54 -0.78 12.88 -35.23 -0.45 -1.23 16 15 Si 0.93 0.86 26.09 -169.99 -4.43 -3.57 16 16 H -0.23 -0.37 5.29 56.52 0.30 -0.08 16 17 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 18 H -0.25 -0.45 7.11 56.52 0.40 -0.04 16 19 C 0.13 0.21 6.61 -39.44 -0.26 -0.05 16 20 F -0.13 -0.25 12.60 2.25 0.03 -0.22 16 21 C -0.24 -0.28 9.02 -39.37 -0.35 -0.64 16 22 C -0.40 1.00 5.28 38.41 0.20 1.20 16 23 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.08 -0.14 8.06 -51.93 -0.42 -0.55 16 30 H 0.08 -0.12 8.06 -51.93 -0.42 -0.54 16 31 H 0.06 -0.07 8.05 -51.93 -0.42 -0.49 16 32 H 0.07 0.01 8.11 -51.93 -0.42 -0.41 16 33 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 34 H 0.07 -0.08 7.64 -51.92 -0.40 -0.47 16 35 H 0.07 -0.09 7.61 -51.93 -0.40 -0.48 16 36 H 0.14 -0.13 8.06 -52.49 -0.42 -0.56 16 37 H 0.14 -0.34 8.00 -52.49 -0.42 -0.76 16 38 H 0.12 -0.15 7.77 -51.93 -0.40 -0.55 16 39 H 0.38 -0.39 8.42 45.56 0.38 -0.01 16 40 H 0.14 -0.04 6.30 -52.48 -0.33 -0.37 16 41 H 0.08 -0.23 8.04 -51.93 -0.42 -0.64 16 42 H 0.08 -0.23 7.85 -51.93 -0.41 -0.64 16 LS Contribution 341.88 15.07 5.15 5.15 Total: 0.00 -4.35 341.88 -8.54 -12.89 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -6.29 Total: -10.56 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.08 Total: 3.56 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -0.65 Total: -1.82 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.03 Total: -0.22 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: -6.70 Total: -9.00 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -4.35 -8.54 -12.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_11680688_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.758 kcal (2) G-P(sol) polarization free energy of solvation -4.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds