Wall clock time and date at job start Fri Mar 5 2021 23:56:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38122 * 119.97728 * 2 1
4 4 C 1.38746 * 119.95564 * 180.02562 * 3 2 1
5 5 O 1.35918 * 120.04206 * 179.97438 * 4 3 2
6 6 C 1.42896 * 116.99834 * 359.97438 * 5 4 3
7 7 C 1.53006 * 109.47051 * 180.02562 * 6 5 4
8 8 C 1.53571 * 109.12221 * 66.45352 * 7 6 5
9 9 C 1.55920 * 109.50277 * 169.52061 * 8 7 6
10 10 Si 1.89654 * 99.33841 * 319.37972 * 9 8 7
11 11 C 1.86301 * 111.45802 * 138.35691 * 10 9 8
12 12 C 1.86297 * 111.45852 * 263.30215 * 10 9 8
13 13 C 1.55354 * 109.09401 * 188.23816 * 7 6 5
14 14 C 1.38699 * 119.91445 * 0.24649 * 4 3 2
15 15 C 1.50698 * 120.02070 * 179.72182 * 14 4 3
16 16 O 1.42897 * 109.47542 * 285.00275 * 15 14 4
17 17 Si 1.86299 * 109.47170 * 165.00226 * 15 14 4
18 18 H 1.48503 * 109.47139 * 300.00408 * 17 15 14
19 19 H 1.48501 * 109.47394 * 60.00048 * 17 15 14
20 20 H 1.48501 * 109.47358 * 180.02562 * 17 15 14
21 21 C 1.38172 * 119.95707 * 359.47666 * 14 4 3
22 22 C 1.38344 * 120.03940 * 0.54813 * 21 14 4
23 23 Cl 1.73604 * 119.95389 * 179.72672 * 22 21 14
24 24 H 1.08997 * 109.46569 * 90.00588 * 1 2 3
25 25 H 1.08999 * 109.47118 * 210.00353 * 1 2 3
26 26 H 1.08997 * 109.47229 * 330.00942 * 1 2 3
27 27 H 1.07998 * 120.01980 * 0.03660 * 3 2 1
28 28 H 1.09007 * 109.47408 * 60.00596 * 6 5 4
29 29 H 1.08996 * 109.47383 * 299.99977 * 6 5 4
30 30 H 1.09001 * 109.01714 * 307.35249 * 7 6 5
31 31 H 1.08995 * 109.47161 * 49.49977 * 8 7 6
32 32 H 1.09000 * 109.47347 * 289.54437 * 8 7 6
33 33 H 1.08998 * 111.42335 * 201.85232 * 9 8 7
34 34 H 1.09003 * 111.42734 * 76.90862 * 9 8 7
35 35 H 1.09002 * 109.47148 * 185.06573 * 11 10 9
36 36 H 1.09001 * 109.46900 * 65.06725 * 11 10 9
37 37 H 1.09004 * 109.47198 * 305.06703 * 11 10 9
38 38 H 1.08995 * 109.47233 * 294.93193 * 12 10 9
39 39 H 1.08997 * 109.47080 * 54.93539 * 12 10 9
40 40 H 1.08998 * 109.47258 * 174.93150 * 12 10 9
41 41 H 1.08995 * 111.07416 * 92.91832 * 13 7 6
42 42 H 1.08996 * 111.09205 * 328.89439 * 13 7 6
43 43 H 1.09002 * 109.46899 * 45.00634 * 15 14 4
44 44 H 0.96697 * 114.00340 * 179.97438 * 16 15 14
45 45 H 1.08002 * 119.97813 * 180.27420 * 21 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1972 1.1964 0.0000
4 6 3.5847 1.1959 -0.0005
5 8 4.2656 2.3723 -0.0011
6 6 3.4886 3.5715 -0.0016
7 6 4.4220 4.7839 -0.0028
8 6 5.1877 4.8280 -1.3333
9 6 5.9363 6.1900 -1.4581
10 14 4.5990 7.3411 -0.7627
11 6 5.3299 8.6328 0.3634
12 6 3.5964 8.1223 -2.1247
13 6 3.5808 6.0731 0.2070
14 6 4.2759 -0.0065 -0.0062
15 6 5.7829 -0.0099 -0.0132
16 8 6.2541 0.3406 -1.3159
17 14 6.4022 -1.7088 0.4349
18 1 5.9125 -2.0730 1.7888
19 1 5.9005 -2.6956 -0.5549
20 1 7.8872 -1.7120 0.4287
21 6 3.5819 -1.2013 -0.0005
22 6 2.1985 -1.1987 -0.0004
23 17 1.3289 -2.7012 -0.0003
24 1 -0.3632 -0.0001 -1.0277
25 1 -0.3633 -0.8899 0.5139
26 1 -0.3633 0.8900 0.5137
27 1 1.6572 2.1317 0.0006
28 1 2.8598 3.5976 0.8885
29 1 2.8598 3.5967 -0.8916
30 1 5.1344 4.6845 0.8162
31 1 4.4855 4.7222 -2.1602
32 1 5.9099 4.0122 -1.3641
33 1 6.1631 6.4258 -2.4979
34 1 6.8360 6.2077 -0.8431
35 1 4.5281 9.2177 0.8140
36 1 5.9802 9.2911 -0.2128
37 1 5.9091 8.1454 1.1477
38 1 4.2357 8.7773 -2.7166
39 1 3.1833 7.3426 -2.7647
40 1 2.7836 8.7039 -1.6899
41 1 3.5274 6.3387 1.2627
42 1 2.5833 5.9641 -0.2186
43 1 6.1511 0.7144 0.7134
44 1 7.2177 0.3587 -1.3939
45 1 4.1199 -2.1379 -0.0004
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
m_7_12058104_18051908.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Fri Mar 5 2021 23:56:13
Heat of formation + Delta-G solvation = -99.864065 kcal
Electronic energy + Delta-G solvation = -24015.202576 eV
Core-core repulsion = 20567.862871 eV
Total energy + Delta-G solvation = -3447.339705 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 328.117 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.58659 -39.29911 -37.91557 -37.25192 -36.54838 -34.21209 -31.18102 -30.43274
-29.41860 -29.09553 -28.36502 -27.27909 -25.24921 -24.33329 -23.29118 -22.18995
-20.66610 -18.78472 -18.51571 -17.84948 -17.38200 -16.92953 -16.17664 -15.82783
-15.51426 -15.34545 -15.10010 -14.97216 -14.54521 -14.36466 -14.03037 -13.83084
-13.77937 -13.58547 -13.53464 -13.38331 -13.31175 -13.17098 -13.10842 -12.91948
-12.86554 -12.52652 -12.25521 -12.18953 -12.16691 -11.88350 -11.82928 -11.69521
-11.42282 -11.31346 -10.75188 -10.45113 -10.30035 -10.22027 -10.01997 -9.16810
-0.03830 0.07461 1.07112 1.11347 1.39719 1.44596 1.71606 1.84474
2.02849 2.05780 2.16577 2.33684 2.66781 3.35440 3.55418 3.69809
3.81308 3.90310 3.98230 4.04120 4.10426 4.21851 4.39129 4.42472
4.47508 4.55048 4.59873 4.65946 4.69260 4.70810 4.78607 4.82575
4.85020 4.86663 4.87238 4.90304 4.98076 5.13424 5.19719 5.20131
5.24166 5.37801 5.43339 5.52484 5.56240 5.62275 5.65904 6.30697
6.80906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.031 4.031
3 C -0.202 4.202
4 C 0.159 3.841
5 O -0.309 6.309
6 C 0.054 3.946
7 C -0.077 4.077
8 C -0.113 4.113
9 C -0.414 4.414
10 Si 1.040 2.960
11 C -0.456 4.456
12 C -0.456 4.456
13 C -0.400 4.400
14 C -0.124 4.124
15 C -0.067 4.067
16 O -0.558 6.558
17 Si 0.966 3.034
18 H -0.256 1.256
19 H -0.263 1.263
20 H -0.246 1.246
21 C -0.082 4.082
22 C -0.088 4.088
23 Cl -0.067 7.067
24 H 0.087 0.913
25 H 0.075 0.925
26 H 0.089 0.911
27 H 0.160 0.840
28 H 0.075 0.925
29 H 0.070 0.930
30 H 0.077 0.923
31 H 0.062 0.938
32 H 0.054 0.946
33 H 0.075 0.925
34 H 0.074 0.926
35 H 0.071 0.929
36 H 0.068 0.932
37 H 0.069 0.931
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.072 0.928
41 H 0.089 0.911
42 H 0.088 0.912
43 H 0.085 0.915
44 H 0.395 0.605
45 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.356 4.621 1.232 4.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.032 4.032
3 C -0.221 4.221
4 C 0.112 3.888
5 O -0.222 6.222
6 C -0.021 4.021
7 C -0.095 4.095
8 C -0.150 4.150
9 C -0.498 4.498
10 Si 1.233 2.767
11 C -0.564 4.564
12 C -0.563 4.563
13 C -0.485 4.485
14 C -0.125 4.125
15 C -0.177 4.177
16 O -0.366 6.366
17 Si 0.789 3.211
18 H -0.180 1.180
19 H -0.188 1.188
20 H -0.169 1.169
21 C -0.101 4.101
22 C -0.115 4.115
23 Cl -0.038 7.038
24 H 0.105 0.895
25 H 0.094 0.906
26 H 0.108 0.892
27 H 0.178 0.822
28 H 0.093 0.907
29 H 0.088 0.912
30 H 0.096 0.904
31 H 0.080 0.920
32 H 0.073 0.927
33 H 0.094 0.906
34 H 0.093 0.907
35 H 0.090 0.910
36 H 0.087 0.913
37 H 0.088 0.912
38 H 0.087 0.913
39 H 0.087 0.913
40 H 0.092 0.908
41 H 0.108 0.892
42 H 0.107 0.893
43 H 0.103 0.897
44 H 0.245 0.755
45 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -0.557 3.785 1.333 4.051
hybrid contribution 0.260 -0.138 -0.116 0.316
sum -0.297 3.647 1.217 3.856
Atomic orbital electron populations
1.20991 0.88332 1.04565 1.03979 1.19860 0.97953 0.90346 0.95041
1.21345 0.92421 0.99433 1.08908 1.18919 0.90533 0.86110 0.93241
1.86148 1.36373 1.12342 1.87352 1.23360 0.94744 0.81678 1.02296
1.21512 0.96749 0.92372 0.98886 1.21901 0.98713 0.98006 0.96388
1.26884 1.09525 1.07135 1.06294 0.79421 0.65994 0.65498 0.65811
1.26186 1.07101 1.12519 1.10568 1.26182 1.09382 1.07417 1.13362
1.26775 1.06157 1.06161 1.09418 1.18706 0.95155 0.90363 1.08300
1.24533 0.92438 1.11489 0.89226 1.86478 1.28277 1.92978 1.28882
0.85507 0.80328 0.75369 0.79880 1.18022 1.18815 1.16947 1.20894
0.92769 0.97996 0.98425 1.20660 0.91966 0.87517 1.11307 1.98357
1.76453 1.31819 1.97165 0.89482 0.90598 0.89172 0.82225 0.90691
0.91152 0.90427 0.91954 0.92725 0.90634 0.90696 0.90954 0.91270
0.91165 0.91266 0.91259 0.90837 0.89183 0.89296 0.89673 0.75533
0.84199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 0.14 9.61 71.24 0.68 0.83 16
2 C -0.03 -0.11 5.88 -19.86 -0.12 -0.23 16
3 C -0.20 -0.56 8.69 22.36 0.19 -0.37 16
4 C 0.16 0.92 6.66 22.50 0.15 1.07 16
5 O -0.31 -1.47 9.23 -92.63 -0.86 -2.33 16
6 C 0.05 -0.04 3.98 71.98 0.29 0.25 16
7 C -0.08 0.16 2.58 -9.79 -0.03 0.13 16
8 C -0.11 0.03 5.06 31.80 0.16 0.19 16
9 C -0.41 1.06 5.95 72.99 0.43 1.49 16
10 Si 1.04 -7.09 13.35 68.60 0.92 -6.17 16
11 C -0.46 2.15 8.65 113.37 0.98 3.13 16
12 C -0.46 2.14 8.65 113.37 0.98 3.12 16
13 C -0.40 2.37 5.28 72.79 0.38 2.75 16
14 C -0.12 -0.83 5.31 -19.77 -0.10 -0.93 16
15 C -0.07 -0.21 2.37 71.24 0.17 -0.04 16
16 O -0.56 -2.12 12.86 -148.98 -1.92 -4.04 16
17 Si 0.97 1.48 25.48 68.60 1.75 3.23 16
18 H -0.26 -0.75 7.11 99.48 0.71 -0.05 16
19 H -0.26 -1.11 6.74 99.48 0.67 -0.44 16
20 H -0.25 -0.06 7.11 99.48 0.71 0.64 16
21 C -0.08 -0.56 8.44 22.28 0.19 -0.37 16
22 C -0.09 -0.55 6.31 22.33 0.14 -0.41 16
23 Cl -0.07 -0.36 27.29 -2.72 -0.07 -0.44 16
24 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16
25 H 0.08 -0.03 6.90 -2.39 -0.02 -0.05 16
26 H 0.09 -0.41 8.08 -2.39 -0.02 -0.43 16
27 H 0.16 -0.37 6.30 -2.91 -0.02 -0.39 16
28 H 0.07 -0.23 7.65 -2.38 -0.02 -0.25 16
29 H 0.07 -0.15 7.60 -2.39 -0.02 -0.17 16
30 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16
31 H 0.06 -0.02 8.05 -2.39 -0.02 -0.04 16
32 H 0.05 0.20 8.11 -2.39 -0.02 0.18 16
33 H 0.07 -0.17 8.06 -2.39 -0.02 -0.19 16
34 H 0.07 -0.15 8.06 -2.39 -0.02 -0.17 16
35 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16
36 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16
37 H 0.07 -0.30 7.96 -2.38 -0.02 -0.31 16
38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16
39 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16
40 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16
41 H 0.09 -0.62 8.04 -2.39 -0.02 -0.64 16
42 H 0.09 -0.64 7.85 -2.39 -0.02 -0.66 16
43 H 0.09 0.08 7.83 -2.39 -0.02 0.06 16
44 H 0.39 -2.07 8.74 -74.06 -0.65 -2.72 16
45 H 0.14 0.73 4.89 -2.91 -0.01 0.72 16
Total: 0.00 -11.40 372.78 5.37 -6.03
By element:
Atomic # 1 Polarization: -7.94 SS G_CDS: 1.05 Total: -6.90 kcal
Atomic # 6 Polarization: 6.11 SS G_CDS: 4.51 Total: 10.62 kcal
Atomic # 8 Polarization: -3.59 SS G_CDS: -2.77 Total: -6.36 kcal
Atomic # 14 Polarization: -5.61 SS G_CDS: 2.66 Total: -2.94 kcal
Atomic # 17 Polarization: -0.36 SS G_CDS: -0.07 Total: -0.44 kcal
Total: -11.40 5.37 -6.03 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
m_7_12058104_18051908.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.839 kcal
(2) G-P(sol) polarization free energy of solvation -11.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.236 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.864 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds