Wall clock time and date at job start Sat Mar 6 2021 00:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38694 * 120.05232 * 359.72212 * 9 8 7 11 11 C 1.38249 * 119.93852 * 179.79145 * 10 9 8 12 12 Br 1.89102 * 119.98423 * 180.22955 * 11 10 9 13 13 C 1.38343 * 120.03386 * 0.48482 * 11 10 9 14 14 C 1.38268 * 120.09790 * 359.74731 * 13 11 10 15 15 C 1.38125 * 120.06700 * 0.02562 * 14 13 11 16 16 C 1.50703 * 120.01450 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47036 * 105.02883 * 16 15 14 18 18 Si 1.86294 * 109.47362 * 345.02336 * 16 15 14 19 19 H 1.48501 * 109.47162 * 60.00074 * 18 16 15 20 20 H 1.48505 * 109.47346 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47349 * 299.99839 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08011 * 120.02795 * 0.02562 * 10 9 8 37 37 H 1.08002 * 119.94704 * 179.72370 * 13 11 10 38 38 H 1.08002 * 119.96255 * 179.97438 * 14 13 11 39 39 H 1.09010 * 109.46840 * 225.02221 * 16 15 14 40 40 H 0.96706 * 113.99356 * 299.99099 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1931 -2.6366 11 6 5.7215 -6.3211 -3.2427 12 35 4.8946 -7.0309 -4.7882 13 6 6.8444 -6.9340 -2.7161 14 6 7.4509 -6.4172 -1.5862 15 6 6.9365 -5.2876 -0.9800 16 6 7.5982 -4.7256 0.2519 17 8 8.3270 -3.5463 -0.0949 18 14 8.7662 -5.9914 0.9618 19 1 9.8029 -6.3289 -0.0465 20 1 9.4177 -5.4378 2.1761 21 1 8.0087 -7.2168 1.3223 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3214 -4.7169 -3.0454 37 1 7.2476 -7.8178 -3.1882 38 1 8.3272 -6.8976 -1.1767 39 1 6.8372 -4.4778 0.9920 40 1 9.0225 -3.6925 -0.7508 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_12104242_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:06:57 Heat of formation + Delta-G solvation = -95.565951 kcal Electronic energy + Delta-G solvation = -21971.190242 eV Core-core repulsion = 18699.556326 eV Total energy + Delta-G solvation = -3271.633917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 358.051 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51753 -39.12178 -37.58655 -36.67062 -33.64949 -31.41805 -31.03573 -30.44241 -29.26694 -28.54019 -27.39479 -26.33659 -24.39811 -23.32367 -22.48989 -20.75015 -19.28849 -18.20782 -17.28040 -17.17332 -16.69851 -16.13769 -16.03364 -15.58552 -15.31395 -15.20593 -14.62897 -14.50294 -14.10788 -13.99544 -13.97590 -13.88304 -13.60132 -13.46386 -13.32543 -13.28435 -12.85300 -12.74495 -12.42564 -12.27498 -12.19233 -11.98688 -11.80375 -11.66081 -11.48938 -11.38001 -11.31369 -10.91901 -10.60502 -10.38932 -10.36991 -9.96178 -9.27624 -0.14136 0.22566 0.53857 1.12716 1.37962 1.50053 1.52727 1.82284 1.84556 1.89424 2.14225 2.40722 2.51130 3.48263 3.56124 3.70515 3.74299 3.89072 3.97237 4.00327 4.05577 4.26578 4.35243 4.42004 4.48158 4.52080 4.60962 4.65688 4.66471 4.68833 4.70625 4.71315 4.73235 4.91808 5.03641 5.06780 5.10880 5.13750 5.31568 5.37210 5.40777 5.46407 5.48943 5.51057 6.31185 6.59523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.968 3.032 3 C -0.442 4.442 4 C -0.398 4.398 5 C -0.109 4.109 6 C -0.081 4.081 7 C 0.062 3.938 8 O -0.295 6.295 9 C 0.168 3.832 10 C -0.185 4.185 11 C -0.045 4.045 12 Br -0.042 7.042 13 C -0.126 4.126 14 C -0.083 4.083 15 C -0.141 4.141 16 C -0.069 4.069 17 O -0.531 6.531 18 Si 0.946 3.054 19 H -0.250 1.250 20 H -0.250 1.250 21 H -0.248 1.248 22 C -0.394 4.394 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.373 0.627 41 H 0.081 0.919 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 0.608 0.147 0.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.166 2.834 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.100 4.100 7 C -0.013 4.013 8 O -0.207 6.207 9 C 0.120 3.880 10 C -0.206 4.206 11 C -0.125 4.125 12 Br 0.044 6.956 13 C -0.146 4.146 14 C -0.102 4.102 15 C -0.143 4.143 16 C -0.180 4.180 17 O -0.335 6.335 18 Si 0.768 3.232 19 H -0.174 1.174 20 H -0.174 1.174 21 H -0.171 1.171 22 C -0.480 4.480 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.219 0.781 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.839 0.141 0.519 0.996 hybrid contribution 0.077 -0.015 -0.628 0.633 sum -0.762 0.126 -0.109 0.780 Atomic orbital electron populations 1.26015 1.19945 1.04578 1.04508 0.80495 0.67395 0.67598 0.67899 1.26015 1.06723 1.17825 1.04516 1.26504 1.05515 1.06328 1.10124 1.21709 1.00653 0.98130 0.94182 1.21685 0.98721 0.94999 0.94588 1.23094 0.85725 0.95207 0.97261 1.86195 1.43869 1.38356 1.52316 1.18619 0.92012 0.86661 0.90667 1.21246 1.03114 0.98389 0.97846 1.21624 0.97898 0.97654 0.95296 1.96802 1.80163 1.84910 1.33717 1.20977 0.95369 1.01160 0.97060 1.20989 0.99391 0.94705 0.95108 1.19814 0.96727 0.97383 1.00355 1.24854 1.00701 0.95553 0.96886 1.86579 1.51171 1.31616 1.64178 0.85786 0.79095 0.77609 0.80711 1.17442 1.17411 1.17104 1.26840 1.02662 1.07841 1.10611 0.91146 0.91113 0.91069 0.91057 0.90982 0.91171 0.90454 0.90366 0.91179 0.92084 0.89563 0.91795 0.91709 0.84190 0.84377 0.84423 0.86332 0.78064 0.89989 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.82 8.65 101.05 0.87 1.69 16 2 Si 0.97 -2.73 13.35 -169.99 -2.27 -5.00 16 3 C -0.44 0.74 8.65 101.05 0.87 1.61 16 4 C -0.40 0.51 5.85 38.29 0.22 0.73 16 5 C -0.11 0.04 5.21 -25.30 -0.13 -0.09 16 6 C -0.08 0.06 2.40 -88.69 -0.21 -0.16 16 7 C 0.06 0.00 4.11 37.15 0.15 0.15 16 8 O -0.29 -0.56 9.25 -19.42 -0.18 -0.74 16 9 C 0.17 0.30 6.66 -39.22 -0.26 0.04 16 10 C -0.19 -0.24 8.78 -39.41 -0.35 -0.59 16 11 C -0.04 -0.06 6.22 -39.54 -0.25 -0.31 16 12 Br -0.04 -0.05 33.70 -68.01 -2.29 -2.34 16 13 C -0.13 -0.07 9.78 -39.53 -0.39 -0.45 16 14 C -0.08 -0.01 8.66 -39.61 -0.34 -0.35 16 15 C -0.14 -0.14 5.27 -104.47 -0.55 -0.69 16 16 C -0.07 -0.02 2.38 36.01 0.09 0.06 16 17 O -0.53 -0.56 12.88 -35.23 -0.45 -1.02 16 18 Si 0.95 -0.56 25.49 -169.99 -4.33 -4.89 16 19 H -0.25 0.27 6.73 56.52 0.38 0.65 16 20 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 21 H -0.25 -0.01 7.11 56.52 0.40 0.40 16 22 C -0.39 0.82 5.30 38.80 0.21 1.02 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.08 -0.08 8.04 -51.93 -0.42 -0.49 16 30 H 0.08 -0.10 8.04 -51.93 -0.42 -0.52 16 31 H 0.07 0.06 8.12 -51.93 -0.42 -0.37 16 32 H 0.06 -0.03 8.04 -51.93 -0.42 -0.45 16 33 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.06 -0.05 7.58 -51.93 -0.39 -0.45 16 35 H 0.06 -0.04 7.68 -51.93 -0.40 -0.43 16 36 H 0.14 0.02 6.30 -52.48 -0.33 -0.31 16 37 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 38 H 0.14 -0.23 4.89 -52.49 -0.26 -0.48 16 39 H 0.12 0.05 7.83 -51.92 -0.41 -0.35 16 40 H 0.37 -0.87 8.70 45.56 0.40 -0.47 16 41 H 0.08 -0.19 8.03 -51.93 -0.42 -0.61 16 42 H 0.08 -0.19 8.06 -51.93 -0.42 -0.61 16 LS Contribution 358.81 15.07 5.41 5.41 Total: 0.00 -4.19 358.81 -10.22 -14.42 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: -6.04 Total: -8.51 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.06 Total: 2.67 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -0.63 Total: -1.76 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: -6.60 Total: -9.89 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -4.19 -10.22 -14.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_12104242_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.149 kcal (2) G-P(sol) polarization free energy of solvation -4.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds