Wall clock time and date at job start Sat Mar 6 2021 00:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35951 * 117.00251 * 179.97438 * 8 7 6 10 10 C 1.38687 * 120.02802 * 359.72657 * 9 8 7 11 11 C 1.38175 * 119.96940 * 179.74554 * 10 9 8 12 12 C 1.38436 * 120.02566 * 0.52654 * 11 10 9 13 13 F 1.35104 * 119.96409 * 179.76523 * 12 11 10 14 14 C 1.38477 * 120.06366 * 359.74646 * 12 11 10 15 15 C 1.38126 * 120.02793 * 359.97438 * 14 12 11 16 16 C 1.50706 * 120.01493 * 180.02562 * 15 14 12 17 17 O 1.42901 * 109.46973 * 104.97529 * 16 15 14 18 18 Si 1.86297 * 109.46713 * 344.98004 * 16 15 14 19 19 H 1.48496 * 109.47630 * 60.00166 * 18 16 15 20 20 H 1.48503 * 109.46934 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47233 * 299.99580 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08004 * 120.01310 * 0.02562 * 10 9 8 37 37 H 1.07999 * 119.98516 * 180.26705 * 11 10 9 38 38 H 1.07997 * 119.98648 * 180.02562 * 14 12 11 39 39 H 1.08996 * 109.47107 * 224.97952 * 16 15 14 40 40 H 0.96707 * 113.99433 * 60.00262 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8107 -4.6710 -1.5061 10 6 5.2003 -5.1930 -2.6368 11 6 5.7207 -6.3198 -3.2440 12 6 6.8443 -6.9340 -2.7179 13 9 7.3492 -8.0384 -3.3099 14 6 7.4513 -6.4171 -1.5857 15 6 6.9366 -5.2874 -0.9801 16 6 7.5979 -4.7248 0.2518 17 8 8.3276 -3.5462 -0.0955 18 14 8.7650 -5.9907 0.9630 19 1 9.8020 -6.3293 -0.0445 20 1 9.4171 -5.4361 2.1765 21 1 8.0068 -7.2154 1.3239 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3214 -4.7163 -3.0451 37 1 5.2481 -6.7241 -4.1270 38 1 8.3281 -6.8969 -1.1766 39 1 6.8368 -4.4762 0.9913 40 1 7.7818 -2.8427 -0.4730 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_12398896_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:18:09 Heat of formation + Delta-G solvation = -137.353890 kcal Electronic energy + Delta-G solvation = -22291.972326 eV Core-core repulsion = 18888.890375 eV Total energy + Delta-G solvation = -3403.081950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.93074 -41.49578 -38.95095 -37.47179 -36.54143 -32.96374 -31.03806 -30.24031 -29.09424 -28.36538 -27.28032 -26.87581 -24.36820 -23.27564 -22.76905 -20.68719 -19.39414 -18.65289 -18.25457 -17.61706 -17.09653 -16.57320 -16.32010 -15.95616 -15.70254 -15.51281 -15.48467 -14.82508 -14.38386 -14.32964 -14.04897 -13.82490 -13.79564 -13.53844 -13.46544 -13.40039 -13.18699 -13.07555 -12.79885 -12.54620 -12.29203 -12.16856 -12.04172 -11.90714 -11.58183 -11.34378 -11.21787 -11.10490 -10.75047 -10.43272 -10.25272 -10.24163 -9.19386 -0.06737 0.05495 1.14243 1.44928 1.47341 1.72007 1.90006 2.02781 2.03860 2.14087 2.35804 2.66824 3.13867 3.45089 3.56578 3.82018 3.86041 3.97152 4.00153 4.08504 4.12310 4.21914 4.43624 4.52121 4.58664 4.61194 4.65395 4.75718 4.77843 4.82231 4.85348 4.86184 4.87015 4.96187 5.00057 5.08842 5.16645 5.25399 5.38760 5.49400 5.54575 5.58497 5.62944 5.65857 6.27052 6.61817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.040 2.960 3 C -0.459 4.459 4 C -0.417 4.417 5 C -0.111 4.111 6 C -0.082 4.082 7 C 0.057 3.943 8 O -0.315 6.315 9 C 0.135 3.865 10 C -0.175 4.175 11 C -0.105 4.105 12 C 0.046 3.954 13 F -0.149 7.149 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.081 4.081 17 O -0.549 6.549 18 Si 1.026 2.974 19 H -0.265 1.265 20 H -0.266 1.266 21 H -0.242 1.242 22 C -0.397 4.397 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.378 0.622 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 3.125 -0.760 6.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.233 2.767 3 C -0.566 4.566 4 C -0.501 4.501 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.017 4.017 8 O -0.229 6.229 9 C 0.088 3.912 10 C -0.194 4.194 11 C -0.124 4.124 12 C 0.027 3.973 13 F -0.127 7.127 14 C -0.149 4.149 15 C -0.132 4.132 16 C -0.189 4.189 17 O -0.355 6.355 18 Si 0.847 3.153 19 H -0.190 1.190 20 H -0.191 1.191 21 H -0.165 1.165 22 C -0.482 4.482 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.109 0.891 40 H 0.228 0.772 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.171 2.280 -0.027 4.754 hybrid contribution -0.615 0.207 -0.693 0.949 sum -4.786 2.487 -0.720 5.442 Atomic orbital electron populations 1.26204 1.21284 1.04548 1.04452 0.79408 0.65592 0.65657 0.66051 1.26221 1.06723 1.19183 1.04470 1.26717 1.05542 1.06712 1.11126 1.21729 1.00153 0.98438 0.94555 1.21707 0.99145 0.94934 0.94283 1.23291 0.85292 0.95369 0.97739 1.86070 1.45047 1.38446 1.53339 1.18856 0.92484 0.87679 0.92135 1.21425 1.03067 0.98277 0.96590 1.21263 0.94371 0.95656 1.01115 1.17701 0.97097 0.87161 0.95380 1.91489 1.87037 1.50953 1.83268 1.21059 1.01015 0.97018 0.95814 1.19514 0.96457 0.96785 1.00441 1.25183 1.03061 0.94676 0.95977 1.86668 1.38210 1.25591 1.85077 0.84304 0.77200 0.75422 0.78334 1.18962 1.19057 1.16498 1.26896 1.02330 1.08038 1.10924 0.90988 0.91467 0.91090 0.91421 0.91215 0.90998 0.90980 0.90614 0.92724 0.91991 0.89743 0.90784 0.90442 0.81689 0.82227 0.83967 0.89138 0.77245 0.89183 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.59 8.65 113.37 0.98 3.57 16 2 Si 1.04 -8.47 13.35 68.60 0.92 -7.55 16 3 C -0.46 2.43 8.65 113.37 0.98 3.41 16 4 C -0.42 1.78 5.85 72.72 0.43 2.21 16 5 C -0.11 0.36 5.21 31.52 0.16 0.53 16 6 C -0.08 0.44 2.40 -9.54 -0.02 0.42 16 7 C 0.06 -0.28 4.11 71.98 0.30 0.01 16 8 O -0.32 0.20 8.82 -93.00 -0.82 -0.62 16 9 C 0.13 0.18 6.62 22.49 0.15 0.33 16 10 C -0.18 0.21 9.04 22.36 0.20 0.42 16 11 C -0.11 -0.07 10.02 22.30 0.22 0.15 16 12 C 0.05 0.24 7.30 22.37 0.16 0.40 16 13 F -0.15 -1.17 17.27 44.97 0.78 -0.39 16 14 C -0.13 -0.66 8.63 22.30 0.19 -0.47 16 15 C -0.13 -0.48 5.28 -19.77 -0.10 -0.58 16 16 C -0.08 -0.22 2.33 71.24 0.17 -0.05 16 17 O -0.55 -2.34 12.65 -148.98 -1.89 -4.22 16 18 Si 1.03 3.08 25.75 68.60 1.77 4.85 16 19 H -0.26 -1.33 6.73 99.48 0.67 -0.66 16 20 H -0.27 -1.30 7.11 99.48 0.71 -0.60 16 21 H -0.24 -0.46 7.11 99.48 0.71 0.25 16 22 C -0.40 3.22 5.30 73.05 0.39 3.60 16 23 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 24 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 25 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 29 H 0.07 -0.24 8.04 -2.39 -0.02 -0.25 16 30 H 0.07 -0.29 8.04 -2.39 -0.02 -0.31 16 31 H 0.05 -0.02 8.12 -2.39 -0.02 -0.04 16 32 H 0.06 -0.21 8.04 -2.39 -0.02 -0.23 16 33 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.07 -0.49 7.58 -2.38 -0.02 -0.50 16 35 H 0.08 -0.54 7.67 -2.38 -0.02 -0.56 16 36 H 0.17 -1.11 6.30 -2.91 -0.02 -1.12 16 37 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 38 H 0.14 0.57 4.89 -2.91 -0.01 0.56 16 39 H 0.09 0.03 7.83 -2.39 -0.02 0.02 16 40 H 0.38 -0.15 8.61 -74.05 -0.64 -0.79 16 41 H 0.09 -0.82 8.03 -2.39 -0.02 -0.84 16 42 H 0.09 -0.81 8.06 -2.38 -0.02 -0.83 16 Total: 0.00 -9.27 343.34 6.04 -3.23 By element: Atomic # 1 Polarization: -10.32 SS G_CDS: 1.09 Total: -9.23 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 4.20 Total: 13.95 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: -2.71 Total: -4.85 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.78 Total: -0.39 kcal Atomic # 14 Polarization: -5.39 SS G_CDS: 2.68 Total: -2.71 kcal Total: -9.27 6.04 -3.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_12398896_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.122 kcal (2) G-P(sol) polarization free energy of solvation -9.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds