Wall clock time and date at job start Sat Mar 6 2021 00:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35954 * 116.99628 * 180.02562 * 8 7 6 10 10 C 1.38654 * 120.05464 * 359.97438 * 9 8 7 11 11 C 1.38210 * 120.01775 * 180.02562 * 10 9 8 12 12 C 1.38208 * 120.11555 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.95529 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.46634 * 254.99803 * 13 12 11 15 15 Si 1.86297 * 109.47184 * 134.99679 * 13 12 11 16 16 H 1.48499 * 109.47244 * 60.00117 * 15 13 12 17 17 H 1.48504 * 109.46838 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47409 * 299.99752 * 15 13 12 19 19 C 1.38495 * 120.09546 * 359.97438 * 12 11 10 20 20 F 1.35103 * 120.00740 * 180.02562 * 19 12 11 21 21 C 1.38502 * 119.98676 * 359.72803 * 19 12 11 22 22 F 1.35099 * 120.05867 * 180.27289 * 21 19 12 23 23 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 31 31 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 32 32 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 33 33 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 34 34 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 35 35 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 36 36 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 37 37 H 1.08002 * 119.99167 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.94687 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46546 * 14.99467 * 13 12 11 40 40 H 0.96702 * 114.00237 * 299.99917 * 14 13 12 41 41 H 1.08995 * 111.07416 * 213.38000 * 23 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0614 -4.4088 -1.5206 10 6 6.6049 -3.8198 -2.6520 11 6 7.7053 -4.3874 -3.2662 12 6 8.2658 -5.5426 -2.7550 13 6 9.4660 -6.1581 -3.4272 14 8 9.0614 -7.3212 -4.1522 15 14 10.7230 -6.6358 -2.1379 16 1 10.1221 -7.6189 -1.2011 17 1 11.9053 -7.2429 -2.8004 18 1 11.1434 -5.4272 -1.3845 19 6 7.7268 -6.1349 -1.6250 20 9 8.2765 -7.2639 -1.1265 21 6 6.6279 -5.5662 -1.0027 22 9 6.1043 -6.1397 0.1028 23 6 2.5556 -1.0124 -1.4423 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 2.9328 -0.3695 2.2392 31 1 1.8198 -1.7216 1.8247 32 1 4.5681 -1.0679 0.6057 33 1 4.0203 -2.6213 1.2792 34 1 2.5407 -3.0062 -0.5835 35 1 4.1426 -2.8616 -2.5254 36 1 5.2196 -1.8841 -1.4992 37 1 6.1678 -2.9177 -3.0540 38 1 8.1280 -3.9274 -4.1473 39 1 9.9070 -5.4364 -4.1149 40 1 8.6593 -8.0074 -3.6021 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_13025868_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:54:01 Heat of formation + Delta-G solvation = -167.960265 kcal Electronic energy + Delta-G solvation = -24461.108066 eV Core-core repulsion = 20587.244948 eV Total energy + Delta-G solvation = -3873.863118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.86011 -49.82094 -41.32731 -39.36311 -37.53449 -36.55889 -32.09073 -31.57302 -30.57816 -29.10436 -28.36798 -27.67636 -26.22437 -24.55533 -23.72656 -22.87354 -20.78496 -19.86331 -19.14653 -18.53956 -17.97929 -17.71413 -17.48601 -16.98782 -16.40283 -16.20252 -15.95919 -15.81527 -15.67452 -15.44431 -14.75506 -14.58079 -14.25292 -13.95089 -13.83484 -13.79553 -13.68672 -13.54994 -13.36111 -13.22472 -13.13581 -12.80804 -12.71992 -12.46977 -12.24582 -12.20738 -12.05970 -11.61822 -11.40152 -11.34032 -10.75809 -10.57149 -10.46613 -10.25658 -9.99701 -9.41393 -0.32466 -0.17056 1.12007 1.41699 1.46428 1.63611 1.84616 1.92229 2.01110 2.05866 2.18371 2.63907 2.74696 3.10878 3.34770 3.53132 3.58994 3.78417 3.82580 3.88488 4.02314 4.09675 4.35822 4.44069 4.52505 4.55464 4.57243 4.66767 4.75025 4.81422 4.82071 4.84253 4.86446 4.87736 4.90671 5.07917 5.14760 5.16764 5.32389 5.37172 5.49299 5.53352 5.60901 5.66155 6.12137 6.51463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.043 2.957 3 C -0.453 4.453 4 C -0.420 4.420 5 C -0.116 4.116 6 C -0.081 4.081 7 C 0.052 3.948 8 O -0.323 6.323 9 C 0.125 3.875 10 C -0.181 4.181 11 C -0.023 4.023 12 C -0.166 4.166 13 C -0.060 4.060 14 O -0.545 6.545 15 Si 0.949 3.051 16 H -0.254 1.254 17 H -0.266 1.266 18 H -0.260 1.260 19 C 0.084 3.916 20 F -0.124 7.124 21 C 0.001 3.999 22 F -0.141 7.141 23 C -0.396 4.396 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.154 0.846 40 H 0.384 0.616 41 H 0.090 0.910 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 6.768 -4.423 8.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.236 2.764 3 C -0.561 4.561 4 C -0.504 4.504 5 C -0.154 4.154 6 C -0.100 4.100 7 C -0.021 4.021 8 O -0.237 6.237 9 C 0.078 3.922 10 C -0.200 4.200 11 C -0.041 4.041 12 C -0.168 4.168 13 C -0.171 4.171 14 O -0.351 6.351 15 Si 0.774 3.226 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.184 1.184 19 C 0.064 3.936 20 F -0.102 7.102 21 C -0.020 4.020 22 F -0.120 7.120 23 C -0.481 4.481 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.197 0.803 38 H 0.204 0.796 39 H 0.172 0.828 40 H 0.233 0.767 41 H 0.109 0.891 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.505 6.772 -4.035 7.900 hybrid contribution -0.536 -1.012 1.041 1.547 sum -1.040 5.761 -2.995 6.575 Atomic orbital electron populations 1.26229 1.21508 1.04391 1.04554 0.79381 0.65467 0.65941 0.65618 1.26145 1.06825 1.18477 1.04661 1.26953 1.03662 1.08528 1.11268 1.21948 0.98744 1.00041 0.94630 1.21549 0.95169 0.98955 0.94300 1.23534 0.96670 0.83755 0.98176 1.86168 1.41280 1.42610 1.53630 1.18926 0.88684 0.91382 0.93235 1.21679 0.99373 1.03626 0.95295 1.21271 0.92452 0.91604 0.98770 1.20330 1.01574 0.99492 0.95373 1.24790 0.97671 0.90680 1.03943 1.86515 1.82709 1.27843 1.38052 0.85944 0.77507 0.81504 0.77613 1.17838 1.19087 1.18435 1.17538 0.94354 0.85969 0.95778 1.91580 1.83030 1.48348 1.87267 1.17182 0.98433 0.96643 0.89720 1.91478 1.85985 1.84116 1.50438 1.26731 1.05812 1.04399 1.11110 0.90780 0.91417 0.91436 0.91409 0.90925 0.90632 0.90587 0.91256 0.90986 0.93631 0.91056 0.89603 0.89472 0.80301 0.79619 0.82803 0.76710 0.89092 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.16 8.65 113.37 0.98 3.14 16 2 Si 1.04 -7.90 13.35 68.60 0.92 -6.98 16 3 C -0.45 2.77 8.65 113.37 0.98 3.76 16 4 C -0.42 0.94 5.95 72.99 0.43 1.38 16 5 C -0.12 0.07 5.06 31.80 0.16 0.23 16 6 C -0.08 0.24 2.58 -9.79 -0.03 0.21 16 7 C 0.05 -0.18 3.98 71.98 0.29 0.10 16 8 O -0.32 -1.38 9.77 -93.03 -0.91 -2.29 16 9 C 0.13 0.42 6.69 22.52 0.15 0.57 16 10 C -0.18 0.76 9.04 22.36 0.20 0.96 16 11 C -0.02 0.13 9.66 22.26 0.21 0.34 16 12 C -0.17 0.09 4.78 -19.81 -0.09 -0.01 16 13 C -0.06 0.14 2.81 71.24 0.20 0.34 16 14 O -0.54 -0.23 12.88 -148.98 -1.92 -2.15 16 15 Si 0.95 1.43 26.09 68.60 1.79 3.22 16 16 H -0.25 -1.34 5.29 99.48 0.53 -0.82 16 17 H -0.27 -0.99 7.11 99.48 0.71 -0.28 16 18 H -0.26 -0.78 7.11 99.48 0.71 -0.07 16 19 C 0.08 0.44 6.62 22.39 0.15 0.59 16 20 F -0.12 -0.95 12.51 44.97 0.56 -0.39 16 21 C 0.00 0.01 7.32 22.49 0.16 0.17 16 22 F -0.14 -1.90 17.03 44.97 0.77 -1.13 16 23 C -0.40 3.03 5.28 72.79 0.38 3.41 16 24 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 25 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 27 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 28 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 30 H 0.08 -0.16 8.06 -2.39 -0.02 -0.18 16 31 H 0.07 -0.04 8.06 -2.39 -0.02 -0.06 16 32 H 0.07 -0.18 8.05 -2.39 -0.02 -0.20 16 33 H 0.04 0.20 8.11 -2.39 -0.02 0.18 16 34 H 0.07 -0.04 8.14 -2.39 -0.02 -0.05 16 35 H 0.09 -0.60 7.65 -2.38 -0.02 -0.62 16 36 H 0.09 -0.65 7.60 -2.39 -0.02 -0.67 16 37 H 0.18 -1.93 6.30 -2.91 -0.02 -1.95 16 38 H 0.19 -2.41 8.00 -2.91 -0.02 -2.43 16 39 H 0.15 -1.25 7.77 -2.39 -0.02 -1.26 16 40 H 0.38 -1.19 8.42 -74.06 -0.62 -1.81 16 41 H 0.09 -0.76 8.04 -2.39 -0.02 -0.78 16 42 H 0.10 -1.01 7.85 -2.39 -0.02 -1.03 16 Total: 0.00 -15.23 347.99 6.37 -8.86 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: 0.97 Total: -14.34 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 4.19 Total: 15.20 kcal Atomic # 8 Polarization: -1.61 SS G_CDS: -2.83 Total: -4.44 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 1.33 Total: -1.52 kcal Atomic # 14 Polarization: -6.47 SS G_CDS: 2.71 Total: -3.76 kcal Total: -15.23 6.37 -8.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13025868_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.098 kcal (2) G-P(sol) polarization free energy of solvation -15.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds