Wall clock time and date at job start Fri Mar 5 2021 23:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76202 * 102.99950 * 2 1 4 4 C 1.39362 * 120.09544 * 179.97438 * 3 2 1 5 5 O 1.36004 * 120.08371 * 0.02832 * 4 3 2 6 6 C 1.42906 * 116.99864 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46752 * 179.97438 * 6 5 4 8 8 H 1.08995 * 112.85092 * 316.19328 * 7 6 5 9 9 C 1.53783 * 113.61172 * 87.50069 * 7 6 5 10 10 C 1.53786 * 87.07879 * 139.97819 * 9 7 6 11 11 H 1.09002 * 113.61184 * 89.11275 * 10 9 7 12 12 O 1.42898 * 113.61612 * 220.01628 * 10 9 7 13 13 C 1.42901 * 114.00053 * 247.49925 * 12 10 9 14 14 C 1.52997 * 109.47166 * 59.99826 * 13 12 10 15 15 C 1.52999 * 109.47087 * 180.02562 * 13 12 10 16 16 C 1.53001 * 109.47003 * 299.99601 * 13 12 10 17 17 C 1.53781 * 113.61256 * 184.99855 * 7 6 5 18 18 C 1.38487 * 119.83335 * 180.29832 * 4 3 2 19 19 C 1.38301 * 120.02484 * 359.42801 * 18 4 3 20 20 C 1.38271 * 120.18964 * 0.59720 * 19 18 4 21 21 C 1.50701 * 119.92054 * 179.69828 * 20 19 18 22 22 O 1.42899 * 109.47203 * 244.98094 * 21 20 19 23 23 Si 1.86303 * 109.46769 * 4.98323 * 21 20 19 24 24 C 1.38206 * 120.16503 * 359.68145 * 20 19 18 25 25 H 1.09000 * 109.47234 * 60.00428 * 1 2 3 26 26 H 1.09008 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47523 * 299.99754 * 1 2 3 28 28 H 1.08993 * 109.47732 * 59.99963 * 6 5 4 29 29 H 1.09000 * 109.47141 * 299.99602 * 6 5 4 30 30 H 1.08996 * 113.61199 * 254.52053 * 9 7 6 31 31 H 1.08996 * 113.61879 * 25.43558 * 9 7 6 32 32 H 1.08999 * 109.46807 * 59.99926 * 14 13 12 33 33 H 1.08999 * 109.46723 * 180.02562 * 14 13 12 34 34 H 1.08994 * 109.47145 * 299.99862 * 14 13 12 35 35 H 1.08998 * 109.47027 * 59.99730 * 15 13 12 36 36 H 1.09003 * 109.47067 * 180.02562 * 15 13 12 37 37 H 1.08999 * 109.46918 * 300.00094 * 15 13 12 38 38 H 1.09008 * 109.47213 * 60.00333 * 16 13 12 39 39 H 1.09000 * 109.47293 * 179.97438 * 16 13 12 40 40 H 1.08998 * 109.47511 * 300.00515 * 16 13 12 41 41 H 1.09007 * 113.61545 * 334.56848 * 17 7 6 42 42 H 1.09000 * 113.61816 * 105.46852 * 17 7 6 43 43 H 1.08008 * 119.98898 * 179.70957 * 18 4 3 44 44 H 1.07999 * 119.90648 * 180.27918 * 19 18 4 45 45 H 1.09003 * 109.46763 * 124.97864 * 21 20 19 46 46 H 0.96700 * 114.00002 * 60.00064 * 22 21 20 47 47 H 1.48498 * 109.99796 * 179.97438 * 23 21 20 48 48 H 1.48497 * 109.99835 * 301.31366 * 23 21 20 49 49 H 1.07994 * 120.01625 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5424 2.1265 0.0005 5 8 4.5400 1.2021 0.0005 6 6 5.8813 1.6951 0.0005 7 6 6.8576 0.5170 0.0011 8 1 6.5694 -0.2711 0.6966 9 6 7.2035 0.0030 -1.4064 10 6 8.6490 -0.1577 -0.9069 11 1 8.8510 -1.1314 -0.4604 12 8 9.6332 0.2284 -1.8683 13 6 10.4186 -0.8576 -2.3642 14 6 9.5043 -1.8812 -3.0402 15 6 11.4339 -0.3304 -3.3802 16 6 11.1591 -1.5236 -1.2028 17 6 8.3314 0.9385 0.1239 18 6 3.8477 3.4773 0.0068 19 6 2.8324 4.4164 0.0005 20 6 1.5104 4.0110 0.0005 21 6 0.4089 5.0395 0.0005 22 8 -0.3282 4.9480 1.2213 23 14 1.1492 6.7423 -0.1520 24 6 1.1967 2.6651 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 6.0452 2.3027 0.8904 29 1 6.0451 2.3027 -0.8895 30 1 6.7207 -0.9415 -1.6572 31 1 7.0923 0.7565 -2.1861 32 1 8.9768 -1.4066 -3.8677 33 1 10.1034 -2.7097 -3.4181 34 1 8.7814 -2.2567 -2.3161 35 1 12.0852 0.3987 -2.8982 36 1 12.0327 -1.1588 -3.7589 37 1 10.9068 0.1445 -4.2077 38 1 10.4361 -1.8992 -0.4785 39 1 11.7578 -2.3522 -1.5810 40 1 11.8104 -0.7944 -0.7211 41 1 8.5285 1.9478 -0.2374 42 1 8.7591 0.7492 1.1084 43 1 4.8792 3.7976 0.0120 44 1 3.0727 5.4693 0.0009 45 1 -0.2587 4.8568 -0.8416 46 1 0.2039 5.0998 2.0143 47 1 0.0731 7.7656 -0.1537 48 1 2.0858 6.9915 0.9732 49 1 0.1634 2.3512 -0.0004 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_13446734_14598384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:56:39 Heat of formation + Delta-G solvation = -65.949905 kcal Electronic energy + Delta-G solvation = -27249.686292 eV Core-core repulsion = 23463.917167 eV Total energy + Delta-G solvation = -3785.769125 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43675 -40.76203 -39.30828 -38.19464 -37.16713 -33.91160 -32.60726 -31.89689 -30.02026 -29.34796 -28.40445 -28.30604 -26.67030 -26.25146 -24.66430 -23.41891 -22.32664 -20.84336 -20.68206 -19.42332 -18.51869 -17.78166 -17.57362 -17.18754 -17.00871 -16.48423 -16.26035 -16.16117 -15.87279 -15.60583 -15.30566 -15.12408 -14.74621 -14.65986 -14.61192 -14.40352 -14.21151 -13.70942 -13.57140 -13.48701 -13.45086 -13.33456 -13.17151 -13.03876 -12.82275 -12.68334 -12.49150 -12.41534 -12.21911 -12.13665 -11.90865 -11.72420 -11.60054 -11.37777 -11.24827 -11.17481 -10.76837 -10.55079 -10.35049 -9.47180 -8.19658 -4.98145 0.11192 0.25909 0.59458 1.25379 1.53045 1.56770 1.94368 2.06502 2.51550 2.72868 3.35514 3.43388 3.53193 3.63459 3.69488 3.74376 3.81473 3.87042 3.89227 3.95437 4.06082 4.09787 4.12331 4.13090 4.20235 4.21913 4.33872 4.43185 4.48076 4.55253 4.57696 4.64087 4.68468 4.73379 4.74958 4.75669 4.77198 4.80590 4.87664 4.90557 4.95366 5.00300 5.09113 5.12951 5.16739 5.28388 5.30112 5.34629 5.36132 5.61224 6.31559 6.37973 6.40890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.086 6.086 3 C -0.120 4.120 4 C 0.157 3.843 5 O -0.301 6.301 6 C 0.071 3.929 7 C -0.109 4.109 8 H 0.105 0.895 9 C -0.147 4.147 10 C 0.062 3.938 11 H 0.092 0.908 12 O -0.361 6.361 13 C 0.105 3.895 14 C -0.176 4.176 15 C -0.139 4.139 16 C -0.179 4.179 17 C -0.127 4.127 18 C -0.188 4.188 19 C -0.082 4.082 20 C -0.137 4.137 21 C -0.071 4.071 22 O -0.531 6.531 23 Si 0.686 3.314 24 C -0.070 4.070 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.117 0.883 46 H 0.376 0.624 47 H -0.257 1.257 48 H -0.260 1.260 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -0.366 -1.221 2.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.156 5.844 3 C -0.233 4.233 4 C 0.105 3.895 5 O -0.214 6.214 6 C -0.004 4.004 7 C -0.127 4.127 8 H 0.123 0.877 9 C -0.184 4.184 10 C 0.004 3.996 11 H 0.110 0.890 12 O -0.281 6.281 13 C 0.066 3.934 14 C -0.234 4.234 15 C -0.196 4.196 16 C -0.237 4.237 17 C -0.164 4.164 18 C -0.208 4.208 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.181 4.181 22 O -0.337 6.337 23 Si 0.587 3.413 24 C -0.094 4.094 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.135 0.865 46 H 0.224 0.776 47 H -0.182 1.182 48 H -0.185 1.185 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.775 -0.815 -1.332 3.184 hybrid contribution -0.948 0.615 1.250 1.685 sum 1.827 -0.199 -0.082 1.839 Atomic orbital electron populations 1.23763 0.95555 1.07313 1.05690 1.85781 1.05094 1.01232 1.92272 1.21075 0.93196 0.98262 1.10805 1.18348 0.86913 0.88097 0.96102 1.86158 1.14256 1.33134 1.87830 1.22877 0.78949 0.96891 1.01717 1.22308 0.93188 0.97946 0.99297 0.87726 1.23610 0.95881 1.02476 0.96480 1.23569 0.87642 0.98204 0.90176 0.89008 1.88031 1.48797 1.32855 1.58394 1.21537 0.91011 0.87260 0.93602 1.22468 1.00096 0.99294 1.01532 1.21769 0.97898 1.01743 0.98203 1.22474 1.01046 1.01464 0.98677 1.23232 0.93438 1.00403 0.99345 1.21123 1.00518 0.91262 1.07898 1.20868 0.91796 0.99223 0.98308 1.20043 0.94456 0.94524 1.04907 1.24973 0.96497 1.06809 0.89771 1.86594 1.38637 1.93078 1.15391 0.94952 0.81168 0.75021 0.90170 1.20858 0.98036 0.91688 0.98791 0.89722 0.87202 0.89725 0.91595 0.91375 0.90861 0.89077 0.91642 0.91544 0.92258 0.91774 0.91069 0.91754 0.92228 0.91355 0.91615 0.88797 0.90416 0.84524 0.85086 0.86515 0.77634 1.18186 1.18464 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.08 9.15 101.05 0.92 1.01 16 2 S -0.09 -0.21 22.05 -107.50 -2.37 -2.58 16 3 C -0.12 -0.33 6.12 -38.96 -0.24 -0.57 16 4 C 0.16 0.39 6.69 -39.07 -0.26 0.13 16 5 O -0.30 -0.73 9.51 -19.75 -0.19 -0.92 16 6 C 0.07 -0.02 4.58 37.16 0.17 0.15 16 7 C -0.11 0.07 4.01 -89.80 -0.36 -0.29 16 8 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 9 C -0.15 0.01 7.46 -25.92 -0.19 -0.18 16 10 C 0.06 -0.01 2.82 -25.92 -0.07 -0.08 16 11 H 0.09 -0.07 5.55 -51.93 -0.29 -0.36 16 12 O -0.36 -0.57 10.00 -35.23 -0.35 -0.92 16 13 C 0.10 0.02 1.11 -90.62 -0.10 -0.08 16 14 C -0.18 0.07 8.39 37.16 0.31 0.39 16 15 C -0.14 0.04 8.84 37.16 0.33 0.37 16 16 C -0.18 0.12 8.38 37.16 0.31 0.43 16 17 C -0.13 0.13 7.47 -25.92 -0.19 -0.06 16 18 C -0.19 -0.13 9.04 -39.47 -0.36 -0.48 16 19 C -0.08 -0.01 8.66 -39.55 -0.34 -0.35 16 20 C -0.14 -0.10 5.35 -104.62 -0.56 -0.66 16 21 C -0.07 0.00 2.80 36.01 0.10 0.10 16 22 O -0.53 -0.71 12.83 -35.23 -0.45 -1.16 16 23 Si 0.69 -0.62 29.88 -169.99 -5.08 -5.70 16 24 C -0.07 -0.11 9.00 -39.39 -0.35 -0.47 16 25 H 0.08 -0.10 7.75 -51.92 -0.40 -0.50 16 26 H 0.11 -0.19 8.14 -51.92 -0.42 -0.61 16 27 H 0.08 -0.07 7.75 -51.93 -0.40 -0.47 16 28 H 0.07 -0.09 7.65 -51.93 -0.40 -0.48 16 29 H 0.07 -0.07 7.38 -51.93 -0.38 -0.45 16 30 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.09 0.05 7.90 -51.93 -0.41 -0.36 16 32 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 34 H 0.06 -0.03 7.02 -51.93 -0.36 -0.39 16 35 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 36 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 37 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.06 -0.06 6.25 -51.92 -0.32 -0.38 16 39 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 40 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.09 -0.09 8.10 -51.93 -0.42 -0.51 16 42 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 43 H 0.14 -0.19 6.30 -52.48 -0.33 -0.52 16 44 H 0.13 -0.23 4.82 -52.49 -0.25 -0.48 16 45 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 46 H 0.38 -0.50 8.70 45.56 0.40 -0.10 16 47 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 48 H -0.26 -0.22 7.01 56.52 0.40 0.18 16 49 H 0.13 0.10 5.88 -52.49 -0.31 -0.21 16 LS Contribution 396.79 15.07 5.98 5.98 Total: 0.00 -5.52 396.79 -11.50 -17.03 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -8.16 Total: -11.07 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.89 Total: -0.65 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: -0.99 Total: -3.01 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.08 Total: -5.70 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.37 Total: -2.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -5.52 -11.50 -17.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_14598384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.924 kcal (2) G-P(sol) polarization free energy of solvation -5.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds