Wall clock time and date at job start Sat Mar 6 2021 02:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76204 * 103.00095 * 2 1 4 4 C 1.38758 * 120.08788 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.96914 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.91607 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.46871 * 299.99869 * 6 5 4 8 8 Si 1.86305 * 109.47386 * 179.97438 * 6 5 4 9 9 H 1.48494 * 109.47149 * 59.99553 * 8 6 5 10 10 H 1.48499 * 109.47350 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46613 * 299.99921 * 8 6 5 12 12 C 1.38225 * 120.16998 * 359.97438 * 5 4 3 13 13 C 1.38349 * 120.18708 * 359.75034 * 12 5 4 14 14 C 1.38438 * 120.02451 * 0.50316 * 13 12 5 15 15 O 1.36012 * 120.08472 * 179.77218 * 14 13 12 16 16 C 1.42901 * 116.99945 * 359.72282 * 15 14 13 17 17 C 1.52995 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53566 * 109.47643 * 293.54788 * 17 16 15 19 19 C 1.55147 * 111.29010 * 190.93802 * 18 17 16 20 20 Si 1.89333 * 101.34989 * 28.58791 * 19 18 17 21 21 C 1.86301 * 111.45813 * 114.13512 * 20 19 18 22 22 C 1.86297 * 111.45926 * 239.08100 * 20 19 18 23 23 C 1.56066 * 109.48114 * 173.43596 * 17 16 15 24 24 H 1.08996 * 109.47337 * 60.00540 * 1 2 3 25 25 H 1.09008 * 109.46750 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47754 * 299.99591 * 1 2 3 27 27 H 1.08001 * 120.01655 * 359.97438 * 4 3 2 28 28 H 1.09006 * 109.47456 * 59.99647 * 6 5 4 29 29 H 0.96702 * 114.00146 * 299.99570 * 7 6 5 30 30 H 1.07995 * 119.90879 * 180.02562 * 12 5 4 31 31 H 1.07996 * 119.98678 * 180.25826 * 13 12 5 32 32 H 1.09007 * 109.46885 * 60.00239 * 16 15 14 33 33 H 1.09005 * 109.47062 * 300.00439 * 16 15 14 34 34 H 1.09004 * 109.46872 * 53.55317 * 17 16 15 35 35 H 1.09003 * 109.12206 * 70.45930 * 18 17 16 36 36 H 1.08996 * 109.12221 * 311.42400 * 18 17 16 37 37 H 1.09002 * 111.04815 * 270.56954 * 19 18 17 38 38 H 1.08999 * 111.04827 * 146.61077 * 19 18 17 39 39 H 1.09002 * 109.47148 * 185.06678 * 21 20 19 40 40 H 1.09001 * 109.46900 * 65.06830 * 21 20 19 41 41 H 1.09004 * 109.47198 * 305.06808 * 21 20 19 42 42 H 1.08995 * 109.47233 * 294.93123 * 22 20 19 43 43 H 1.08997 * 109.47080 * 54.93469 * 22 20 19 44 44 H 1.08998 * 109.47258 * 174.93080 * 22 20 19 45 45 H 1.08996 * 111.41269 * 43.11689 * 23 17 16 46 46 H 1.09006 * 111.49251 * 278.12945 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1970 2.6648 -0.0005 5 6 1.5108 4.0111 -0.0011 6 6 0.4093 5.0396 -0.0011 7 8 -0.3989 4.8719 -1.1676 8 14 1.1540 6.7473 -0.0011 9 1 1.9936 6.9212 -1.2135 10 1 0.0686 7.7607 -0.0004 11 1 1.9935 6.9211 1.2115 12 6 2.8323 4.4164 -0.0005 13 6 3.8480 3.4771 0.0057 14 6 3.5428 2.1268 0.0010 15 8 4.5404 1.2023 0.0025 16 6 5.8817 1.6952 0.0029 17 6 6.8579 0.5172 0.0052 18 6 6.7383 -0.2443 1.3334 19 6 7.8876 -1.2733 1.4983 20 14 9.2671 -0.4554 0.4919 21 6 10.6906 0.0584 1.5785 22 6 9.8414 -1.5558 -0.8973 23 6 8.3156 1.0490 -0.1625 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.1636 2.3509 -0.0014 28 1 -0.2068 4.9123 0.8891 29 1 0.0848 4.9719 -1.9990 30 1 3.0726 5.4693 -0.0005 31 1 4.8794 3.7974 0.0104 32 1 6.0449 2.3037 0.8925 33 1 6.0460 2.3021 -0.8876 34 1 6.6203 -0.1532 -0.8208 35 1 5.7830 -0.7687 1.3595 36 1 6.7753 0.4677 2.1578 37 1 7.6127 -2.2387 1.0734 38 1 8.1744 -1.3755 2.5449 39 1 11.4233 0.6038 0.9837 40 1 11.1581 -0.8277 2.0079 41 1 10.3231 0.6997 2.3797 42 1 10.3037 -2.4520 -0.4836 43 1 8.9879 -1.8385 -1.5134 44 1 10.5687 -1.0207 -1.5078 45 1 8.4912 1.9303 0.4543 46 1 8.5514 1.2449 -1.2086 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_13446734_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:33:26 Heat of formation + Delta-G solvation = -87.498692 kcal Electronic energy + Delta-G solvation = -23346.949828 eV Core-core repulsion = 20065.334605 eV Total energy + Delta-G solvation = -3281.615223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34589 -39.42093 -37.46512 -36.48910 -32.66949 -31.87332 -30.60533 -29.77936 -29.11401 -28.37884 -27.47571 -26.05580 -24.59911 -23.64844 -22.44392 -20.77067 -19.52379 -18.48016 -17.76189 -17.27736 -17.00283 -16.23319 -16.17372 -15.74206 -15.58540 -15.43908 -15.05719 -14.96887 -14.70266 -14.37773 -13.96185 -13.84423 -13.80544 -13.73104 -13.60532 -13.44872 -13.42363 -13.26139 -13.16001 -12.65038 -12.48038 -12.28498 -12.22162 -12.13109 -12.06345 -11.70229 -11.54766 -11.37311 -11.26176 -10.84495 -10.76771 -10.46128 -10.40455 -10.27887 -9.51864 -8.33658 0.02710 0.19090 0.52569 1.16339 1.45898 1.48394 1.51509 1.68819 1.91204 2.00721 2.03321 2.18547 2.45656 2.64414 3.49795 3.62153 3.71510 3.80636 3.84202 4.01924 4.07015 4.13797 4.21203 4.25126 4.35155 4.40958 4.53843 4.55387 4.61368 4.65758 4.69931 4.74995 4.81428 4.81608 4.83669 4.85551 4.86399 4.91175 5.09224 5.12181 5.21400 5.27827 5.34169 5.47148 5.51802 5.58465 5.61226 5.64668 6.29671 6.67774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.136 6.136 3 C -0.134 4.134 4 C -0.073 4.073 5 C -0.141 4.141 6 C -0.075 4.075 7 O -0.553 6.553 8 Si 0.983 3.017 9 H -0.250 1.250 10 H -0.275 1.275 11 H -0.255 1.255 12 C -0.093 4.093 13 C -0.190 4.190 14 C 0.138 3.862 15 O -0.319 6.319 16 C 0.059 3.941 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.417 4.417 20 Si 1.041 2.959 21 C -0.453 4.453 22 C -0.457 4.457 23 C -0.397 4.397 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.124 0.876 29 H 0.389 0.611 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 1.941 -0.292 3.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.106 5.894 3 C -0.247 4.247 4 C -0.097 4.097 5 C -0.143 4.143 6 C -0.186 4.186 7 O -0.360 6.360 8 Si 0.807 3.193 9 H -0.173 1.173 10 H -0.200 1.200 11 H -0.179 1.179 12 C -0.113 4.113 13 C -0.210 4.210 14 C 0.087 3.913 15 O -0.233 6.233 16 C -0.016 4.016 17 C -0.100 4.100 18 C -0.147 4.147 19 C -0.501 4.501 20 Si 1.234 2.766 21 C -0.561 4.561 22 C -0.564 4.564 23 C -0.482 4.482 24 H 0.110 0.890 25 H 0.140 0.860 26 H 0.110 0.890 27 H 0.161 0.839 28 H 0.141 0.859 29 H 0.238 0.762 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.139 1.351 0.149 3.421 hybrid contribution -0.786 0.702 -0.286 1.092 sum 2.353 2.053 -0.137 3.126 Atomic orbital electron populations 1.23789 0.92574 1.08289 1.06347 1.85869 1.08506 1.02399 1.92630 1.21227 0.93771 0.98064 1.11632 1.20994 0.98267 0.91822 0.98621 1.20265 0.94887 0.94722 1.04468 1.25005 0.95260 1.06225 0.92082 1.86474 1.38353 1.94984 1.16150 0.85218 0.78418 0.74311 0.81397 1.17312 1.20029 1.17906 1.21090 0.91911 0.99954 0.98348 1.21345 1.01589 0.90780 1.07304 1.18611 0.87157 0.88803 0.96767 1.86164 1.15304 1.33890 1.87921 1.23250 0.77977 0.98046 1.02310 1.21695 0.94058 0.95523 0.98774 1.21694 0.98844 0.97597 0.96531 1.26754 1.11488 1.02809 1.09071 0.79407 0.65445 0.65931 0.65768 1.26142 1.14042 1.05810 1.10099 1.26194 1.06079 1.10374 1.13799 1.26936 1.00539 1.13567 1.07160 0.89018 0.86020 0.89025 0.83899 0.85856 0.76234 0.84150 0.82818 0.90965 0.90800 0.90506 0.93534 0.92027 0.91140 0.90395 0.90761 0.91228 0.91046 0.91178 0.91459 0.90762 0.89083 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.08 9.15 113.37 1.04 1.12 16 2 S -0.14 -0.94 22.05 -56.49 -1.25 -2.19 16 3 C -0.13 -0.96 6.12 22.68 0.14 -0.82 16 4 C -0.07 -0.29 8.92 22.40 0.20 -0.09 16 5 C -0.14 -0.25 5.39 -19.87 -0.11 -0.35 16 6 C -0.08 0.08 2.82 71.24 0.20 0.28 16 7 O -0.55 -0.04 12.77 -148.98 -1.90 -1.95 16 8 Si 0.98 -1.86 25.07 68.60 1.72 -0.15 16 9 H -0.25 0.54 7.11 99.48 0.71 1.25 16 10 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 11 H -0.25 0.29 7.11 99.48 0.71 1.00 16 12 C -0.09 -0.11 8.66 22.29 0.19 0.08 16 13 C -0.19 -0.50 9.04 22.34 0.20 -0.29 16 14 C 0.14 0.94 6.69 22.60 0.15 1.09 16 15 O -0.32 -2.30 9.29 -93.68 -0.87 -3.17 16 16 C 0.06 0.06 4.11 71.98 0.30 0.35 16 17 C -0.08 0.02 2.40 -9.54 -0.02 -0.01 16 18 C -0.11 -0.18 5.21 31.52 0.16 -0.02 16 19 C -0.42 0.39 5.85 72.72 0.43 0.82 16 20 Si 1.04 -5.99 13.35 68.60 0.92 -5.08 16 21 C -0.45 1.99 8.65 113.37 0.98 2.97 16 22 C -0.46 1.56 8.65 113.37 0.98 2.55 16 23 C -0.40 1.89 5.30 73.05 0.39 2.28 16 24 H 0.09 -0.16 7.75 -2.39 -0.02 -0.18 16 25 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.09 -0.18 7.75 -2.39 -0.02 -0.20 16 27 H 0.14 0.23 5.88 -2.91 -0.02 0.21 16 28 H 0.12 -0.33 7.96 -2.38 -0.02 -0.35 16 29 H 0.39 -2.30 8.70 -74.06 -0.64 -2.94 16 30 H 0.14 -0.38 4.86 -2.91 -0.01 -0.39 16 31 H 0.15 -0.31 6.30 -2.91 -0.02 -0.33 16 32 H 0.07 -0.08 7.58 -2.38 -0.02 -0.10 16 33 H 0.07 -0.10 7.68 -2.38 -0.02 -0.12 16 34 H 0.08 0.09 8.14 -2.39 -0.02 0.08 16 35 H 0.05 0.29 8.12 -2.39 -0.02 0.27 16 36 H 0.06 0.07 8.04 -2.39 -0.02 0.05 16 37 H 0.07 0.01 8.04 -2.39 -0.02 -0.01 16 38 H 0.08 -0.09 8.04 -2.39 -0.02 -0.11 16 39 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 40 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 42 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 45 H 0.09 -0.56 8.03 -2.39 -0.02 -0.58 16 46 H 0.09 -0.53 8.06 -2.38 -0.02 -0.55 16 Total: 0.00 -12.34 377.64 4.91 -7.43 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: 1.07 Total: -4.86 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.23 Total: 9.96 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: -2.77 Total: -5.12 kcal Atomic # 14 Polarization: -7.86 SS G_CDS: 2.64 Total: -5.22 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -1.25 Total: -2.19 kcal Total: -12.34 4.91 -7.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.070 kcal (2) G-P(sol) polarization free energy of solvation -12.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds