Wall clock time and date at job start Sat Mar 6 2021 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76198 * 103.00028 * 2 1 4 4 C 1.38758 * 120.09363 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.97239 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.91645 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47143 * 300.00042 * 6 5 4 8 8 Si 1.86304 * 109.47112 * 180.02562 * 6 5 4 9 9 H 1.48498 * 109.46668 * 299.99659 * 8 6 5 10 10 H 1.48490 * 109.47282 * 59.99740 * 8 6 5 11 11 H 1.48498 * 109.47012 * 180.02562 * 8 6 5 12 12 C 1.38232 * 120.16610 * 0.02562 * 5 4 3 13 13 C 1.38351 * 120.18954 * 359.74468 * 12 5 4 14 14 C 1.38436 * 120.02126 * 0.50755 * 13 12 5 15 15 O 1.36005 * 120.08230 * 179.76776 * 14 13 12 16 16 C 1.42906 * 116.99980 * 359.72583 * 15 14 13 17 17 C 1.50693 * 109.47463 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99418 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 Si 1.86795 * 120.00205 * 180.02562 * 20 19 18 22 22 C 1.86297 * 109.47192 * 89.99958 * 21 20 19 23 23 C 1.86301 * 109.47283 * 209.99980 * 21 20 19 24 24 C 1.86301 * 109.47118 * 329.99845 * 21 20 19 25 25 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 26 26 C 1.38234 * 120.00067 * 0.02562 * 25 20 19 27 27 H 1.08998 * 109.47164 * 300.00079 * 1 2 3 28 28 H 1.08993 * 109.47316 * 60.00214 * 1 2 3 29 29 H 1.09005 * 109.47542 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.01310 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47182 * 60.00231 * 6 5 4 32 32 H 0.96694 * 114.00325 * 179.97438 * 7 6 5 33 33 H 1.07996 * 119.90436 * 179.97438 * 12 5 4 34 34 H 1.07990 * 119.98555 * 180.25136 * 13 12 5 35 35 H 1.09000 * 109.46902 * 59.99881 * 16 15 14 36 36 H 1.09001 * 109.46622 * 299.99777 * 16 15 14 37 37 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 39 39 H 1.08999 * 109.47282 * 60.00138 * 22 21 20 40 40 H 1.08997 * 109.47709 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47505 * 300.00288 * 22 21 20 42 42 H 1.08998 * 109.47270 * 60.00089 * 23 21 20 43 43 H 1.08997 * 109.47416 * 180.02562 * 23 21 20 44 44 H 1.09006 * 109.46995 * 300.00168 * 23 21 20 45 45 H 1.09002 * 109.46976 * 60.00696 * 24 21 20 46 46 H 1.09005 * 109.47230 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.47233 * 299.99787 * 24 21 20 48 48 H 1.08001 * 119.99624 * 180.02562 * 25 20 19 49 49 H 1.07999 * 120.00008 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1971 2.6648 -0.0005 5 6 1.5109 4.0112 -0.0011 6 6 0.4095 5.0396 -0.0011 7 8 -0.3988 4.8720 -1.1675 8 14 1.1544 6.7473 -0.0026 9 1 1.9946 6.9218 1.2093 10 1 1.9932 6.9203 -1.2156 11 1 0.0690 7.7607 -0.0020 12 6 2.8325 4.4163 -0.0016 13 6 3.8482 3.4769 0.0037 14 6 3.5429 2.1267 -0.0010 15 8 4.5404 1.2022 -0.0006 16 6 5.8817 1.6950 -0.0012 17 6 6.8433 0.5347 0.0001 18 6 7.2842 0.0011 -1.1964 19 6 8.1707 -1.0595 -1.1952 20 6 8.6121 -1.5902 0.0025 21 14 9.8105 -3.0230 0.0041 22 6 11.5562 -2.3724 0.0073 23 6 9.5327 -4.0633 1.5243 24 6 9.5379 -4.0623 -1.5179 25 6 8.1673 -1.0597 1.1990 26 6 7.2808 0.0010 1.1979 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.1637 2.3510 -0.0005 31 1 -0.2065 4.9124 0.8892 32 1 -1.1296 5.5016 -1.2335 33 1 3.0729 5.4692 -0.0024 34 1 4.8795 3.7972 0.0074 35 1 6.0457 2.3033 0.8884 36 1 6.0453 2.3020 -0.8917 37 1 6.9399 0.4160 -2.1322 38 1 8.5187 -1.4735 -2.1301 39 1 11.7157 -1.7644 0.8978 40 1 12.2556 -3.2084 0.0087 41 1 11.7188 -1.7637 -0.8821 42 1 8.5114 -4.4440 1.5225 43 1 10.2323 -4.8991 1.5255 44 1 9.6922 -3.4552 2.4149 45 1 9.7006 -3.4536 -2.4074 46 1 10.2376 -4.8981 -1.5172 47 1 8.5166 -4.4429 -1.5198 48 1 8.5125 -1.4740 2.1348 49 1 6.9337 0.4157 2.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_13446734_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:11:13 Heat of formation + Delta-G solvation = -62.019204 kcal Electronic energy + Delta-G solvation = -26725.157453 eV Core-core repulsion = 23059.968682 eV Total energy + Delta-G solvation = -3665.188771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 362.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30095 -40.04217 -38.87593 -37.25819 -33.30354 -32.42832 -31.85017 -31.62937 -29.82210 -29.55171 -28.42479 -28.40301 -27.50364 -26.06559 -24.18101 -23.44961 -22.52616 -21.76670 -19.46760 -18.56249 -18.09926 -17.60287 -17.05671 -17.00074 -16.37263 -15.99925 -15.80788 -15.55288 -15.41767 -15.13314 -14.71043 -14.62801 -14.50349 -14.33262 -14.19594 -14.11061 -13.96599 -13.85298 -13.68143 -13.54622 -13.45421 -13.32936 -13.24441 -13.24022 -13.08703 -12.63844 -12.53605 -12.30827 -12.14271 -11.99535 -11.77000 -11.72826 -11.07029 -11.02532 -10.88876 -10.80798 -10.72059 -10.37360 -9.74309 -9.65973 -9.39864 -8.13971 0.15447 0.19649 0.30458 0.58484 0.65267 1.10057 1.38938 1.45917 1.57782 1.72191 1.86516 1.86637 1.90538 2.29005 2.53704 2.56099 3.06413 3.34835 3.65644 3.75586 3.81846 3.90160 3.94947 4.11480 4.16751 4.17942 4.23275 4.24866 4.29308 4.35170 4.53581 4.57404 4.69617 4.71586 4.72223 4.73182 4.76478 4.77440 4.77836 4.79422 4.79982 4.98325 5.03638 5.17219 5.18688 5.40814 5.42766 5.48052 5.52346 5.54761 5.63546 5.65052 5.65791 6.14481 6.33353 6.53382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.085 6.085 3 C -0.119 4.119 4 C -0.066 4.066 5 C -0.094 4.094 6 C -0.078 4.078 7 O -0.545 6.545 8 Si 0.945 3.055 9 H -0.249 1.249 10 H -0.247 1.247 11 H -0.256 1.256 12 C -0.087 4.087 13 C -0.186 4.186 14 C 0.153 3.847 15 O -0.296 6.296 16 C 0.099 3.901 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.361 4.361 21 Si 1.060 2.940 22 C -0.449 4.449 23 C -0.450 4.450 24 C -0.450 4.450 25 C -0.092 4.092 26 C -0.105 4.105 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.380 0.620 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 1.251 1.102 1.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.158 5.842 3 C -0.232 4.232 4 C -0.090 4.090 5 C -0.096 4.096 6 C -0.188 4.188 7 O -0.351 6.351 8 Si 0.768 3.232 9 H -0.173 1.173 10 H -0.170 1.170 11 H -0.180 1.180 12 C -0.108 4.108 13 C -0.207 4.207 14 C 0.102 3.898 15 O -0.209 6.209 16 C 0.024 3.976 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.110 4.110 20 C -0.402 4.402 21 Si 1.251 2.749 22 C -0.556 4.556 23 C -0.557 4.557 24 C -0.558 4.558 25 C -0.110 4.110 26 C -0.123 4.123 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.228 0.772 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.141 0.859 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.461 0.356 0.993 1.802 hybrid contribution -1.500 1.581 0.100 2.182 sum -0.039 1.937 1.093 2.225 Atomic orbital electron populations 1.23762 0.95651 1.07269 1.05686 1.85839 1.04994 1.01098 1.92293 1.21062 0.93106 0.98322 1.10717 1.20817 0.98076 0.91552 0.98517 1.19026 0.92896 0.93515 1.04157 1.24678 0.95407 1.07857 0.90861 1.86508 1.45638 1.60632 1.42331 0.85758 0.80751 0.74848 0.81836 1.17311 1.16991 1.18027 1.20775 0.91837 0.99223 0.98959 1.21057 1.00372 0.91234 1.08002 1.18333 0.86905 0.88038 0.96490 1.86251 1.13755 1.32972 1.87951 1.21685 0.78800 0.94777 1.02312 1.19419 0.97711 0.97564 0.94077 1.21145 0.97386 0.96536 0.97217 1.21071 0.96281 0.95401 0.98218 1.27472 1.07920 1.10649 0.94171 0.78181 0.65150 0.64172 0.67358 1.26122 1.18405 1.06497 1.04604 1.26135 1.05090 1.09510 1.15012 1.26137 1.05076 1.09502 1.15041 1.21070 0.96282 0.95410 0.98222 1.21139 0.97416 0.96550 0.97186 0.89798 0.89618 0.87234 0.84679 0.90601 0.77249 0.85737 0.84498 0.90907 0.90903 0.86137 0.85907 0.91180 0.91024 0.91173 0.91000 0.90957 0.91181 0.91177 0.90957 0.90998 0.85911 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.01 9.15 101.05 0.92 0.94 16 2 S -0.08 -0.28 22.05 -107.50 -2.37 -2.65 16 3 C -0.12 -0.45 6.12 -38.95 -0.24 -0.69 16 4 C -0.07 -0.17 8.92 -39.39 -0.35 -0.52 16 5 C -0.09 -0.20 5.42 -104.62 -0.57 -0.77 16 6 C -0.08 0.01 2.81 36.00 0.10 0.11 16 7 O -0.55 -0.13 12.74 -35.23 -0.45 -0.58 16 8 Si 0.95 -0.52 25.06 -169.99 -4.26 -4.78 16 9 H -0.25 0.03 7.11 56.52 0.40 0.43 16 10 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 11 H -0.26 0.13 7.11 56.52 0.40 0.53 16 12 C -0.09 -0.16 8.67 -39.54 -0.34 -0.50 16 13 C -0.19 -0.35 9.04 -39.47 -0.36 -0.71 16 14 C 0.15 0.55 6.69 -39.07 -0.26 0.29 16 15 O -0.30 -1.12 9.49 -19.76 -0.19 -1.31 16 16 C 0.10 0.11 4.87 36.00 0.18 0.29 16 17 C -0.09 -0.17 5.51 -104.63 -0.58 -0.75 16 18 C -0.10 -0.18 9.70 -39.58 -0.38 -0.57 16 19 C -0.09 -0.09 9.29 -39.58 -0.37 -0.45 16 20 C -0.36 -0.12 4.59 -39.58 -0.18 -0.30 16 21 Si 1.06 -2.27 12.32 -169.99 -2.09 -4.37 16 22 C -0.45 0.59 8.65 101.05 0.87 1.47 16 23 C -0.45 0.63 8.53 101.05 0.86 1.49 16 24 C -0.45 0.61 8.53 101.05 0.86 1.48 16 25 C -0.09 -0.08 9.29 -39.58 -0.37 -0.45 16 26 C -0.10 -0.17 9.70 -39.58 -0.38 -0.56 16 27 H 0.08 -0.08 7.75 -51.92 -0.40 -0.48 16 28 H 0.08 -0.03 7.75 -51.93 -0.40 -0.44 16 29 H 0.11 -0.14 8.14 -51.92 -0.42 -0.57 16 30 H 0.14 0.17 5.88 -52.49 -0.31 -0.14 16 31 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.38 -1.60 8.74 45.56 0.40 -1.20 16 33 H 0.13 0.01 4.86 -52.49 -0.26 -0.25 16 34 H 0.14 -0.07 6.29 -52.49 -0.33 -0.40 16 35 H 0.07 -0.03 7.60 -51.93 -0.39 -0.42 16 36 H 0.07 -0.01 7.62 -51.93 -0.40 -0.41 16 37 H 0.12 0.07 8.06 -52.49 -0.42 -0.36 16 38 H 0.12 -0.12 7.43 -52.49 -0.39 -0.51 16 39 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 42 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 45 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 46 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 47 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 48 H 0.12 -0.13 7.43 -52.49 -0.39 -0.52 16 49 H 0.12 0.05 8.06 -52.49 -0.42 -0.38 16 LS Contribution 413.15 15.07 6.23 6.23 Total: 0.00 -6.93 413.15 -10.76 -17.69 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -7.04 Total: -10.02 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.58 Total: -0.20 kcal Atomic # 8 Polarization: -1.26 SS G_CDS: -0.64 Total: -1.90 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: -6.36 Total: -9.14 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.37 Total: -2.65 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -6.93 -10.76 -17.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.334 kcal (2) G-P(sol) polarization free energy of solvation -6.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds