Wall clock time and date at job start Sat Mar 6 2021 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76198 * 103.00028 * 2 1 4 4 C 1.38758 * 120.09363 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.97239 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.91645 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47143 * 300.00042 * 6 5 4 8 8 Si 1.86304 * 109.47112 * 180.02562 * 6 5 4 9 9 H 1.48498 * 109.46668 * 299.99659 * 8 6 5 10 10 H 1.48490 * 109.47282 * 59.99740 * 8 6 5 11 11 H 1.48498 * 109.47012 * 180.02562 * 8 6 5 12 12 C 1.38232 * 120.16610 * 0.02562 * 5 4 3 13 13 C 1.38351 * 120.18954 * 359.74468 * 12 5 4 14 14 C 1.38436 * 120.02126 * 0.50755 * 13 12 5 15 15 O 1.36005 * 120.08230 * 179.76776 * 14 13 12 16 16 C 1.42906 * 116.99980 * 359.72583 * 15 14 13 17 17 C 1.50693 * 109.47463 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99418 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 Si 1.86795 * 120.00205 * 180.02562 * 20 19 18 22 22 C 1.86297 * 109.47192 * 89.99958 * 21 20 19 23 23 C 1.86301 * 109.47283 * 209.99980 * 21 20 19 24 24 C 1.86301 * 109.47118 * 329.99845 * 21 20 19 25 25 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 26 26 C 1.38234 * 120.00067 * 0.02562 * 25 20 19 27 27 H 1.08998 * 109.47164 * 300.00079 * 1 2 3 28 28 H 1.08993 * 109.47316 * 60.00214 * 1 2 3 29 29 H 1.09005 * 109.47542 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.01310 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47182 * 60.00231 * 6 5 4 32 32 H 0.96694 * 114.00325 * 179.97438 * 7 6 5 33 33 H 1.07996 * 119.90436 * 179.97438 * 12 5 4 34 34 H 1.07990 * 119.98555 * 180.25136 * 13 12 5 35 35 H 1.09000 * 109.46902 * 59.99881 * 16 15 14 36 36 H 1.09001 * 109.46622 * 299.99777 * 16 15 14 37 37 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 39 39 H 1.08999 * 109.47282 * 60.00138 * 22 21 20 40 40 H 1.08997 * 109.47709 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47505 * 300.00288 * 22 21 20 42 42 H 1.08998 * 109.47270 * 60.00089 * 23 21 20 43 43 H 1.08997 * 109.47416 * 180.02562 * 23 21 20 44 44 H 1.09006 * 109.46995 * 300.00168 * 23 21 20 45 45 H 1.09002 * 109.46976 * 60.00696 * 24 21 20 46 46 H 1.09005 * 109.47230 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.47233 * 299.99787 * 24 21 20 48 48 H 1.08001 * 119.99624 * 180.02562 * 25 20 19 49 49 H 1.07999 * 120.00008 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1971 2.6648 -0.0005 5 6 1.5109 4.0112 -0.0011 6 6 0.4095 5.0396 -0.0011 7 8 -0.3988 4.8720 -1.1675 8 14 1.1544 6.7473 -0.0026 9 1 1.9946 6.9218 1.2093 10 1 1.9932 6.9203 -1.2156 11 1 0.0690 7.7607 -0.0020 12 6 2.8325 4.4163 -0.0016 13 6 3.8482 3.4769 0.0037 14 6 3.5429 2.1267 -0.0010 15 8 4.5404 1.2022 -0.0006 16 6 5.8817 1.6950 -0.0012 17 6 6.8433 0.5347 0.0001 18 6 7.2842 0.0011 -1.1964 19 6 8.1707 -1.0595 -1.1952 20 6 8.6121 -1.5902 0.0025 21 14 9.8105 -3.0230 0.0041 22 6 11.5562 -2.3724 0.0073 23 6 9.5327 -4.0633 1.5243 24 6 9.5379 -4.0623 -1.5179 25 6 8.1673 -1.0597 1.1990 26 6 7.2808 0.0010 1.1979 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.1637 2.3510 -0.0005 31 1 -0.2065 4.9124 0.8892 32 1 -1.1296 5.5016 -1.2335 33 1 3.0729 5.4692 -0.0024 34 1 4.8795 3.7972 0.0074 35 1 6.0457 2.3033 0.8884 36 1 6.0453 2.3020 -0.8917 37 1 6.9399 0.4160 -2.1322 38 1 8.5187 -1.4735 -2.1301 39 1 11.7157 -1.7644 0.8978 40 1 12.2556 -3.2084 0.0087 41 1 11.7188 -1.7637 -0.8821 42 1 8.5114 -4.4440 1.5225 43 1 10.2323 -4.8991 1.5255 44 1 9.6922 -3.4552 2.4149 45 1 9.7006 -3.4536 -2.4074 46 1 10.2376 -4.8981 -1.5172 47 1 8.5166 -4.4429 -1.5198 48 1 8.5125 -1.4740 2.1348 49 1 6.9337 0.4157 2.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_13446734_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:11:12 Heat of formation + Delta-G solvation = -52.720726 kcal Electronic energy + Delta-G solvation = -26724.754241 eV Core-core repulsion = 23059.968682 eV Total energy + Delta-G solvation = -3664.785559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 362.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42518 -40.09328 -38.95244 -37.26549 -33.36522 -32.53940 -31.89072 -31.71588 -29.83546 -29.43429 -28.29789 -28.27060 -27.55631 -26.10626 -24.30179 -23.49560 -22.61560 -21.83303 -19.60122 -18.52295 -18.20229 -17.69566 -17.12895 -17.07960 -16.44582 -16.02752 -15.83934 -15.64060 -15.51644 -15.18215 -14.76172 -14.64629 -14.48926 -14.34512 -14.09924 -14.05154 -13.91725 -13.76205 -13.69099 -13.60369 -13.45158 -13.35670 -13.13552 -13.11650 -12.96957 -12.66705 -12.56379 -12.33999 -12.19901 -11.99024 -11.81224 -11.75125 -11.20475 -10.92581 -10.86900 -10.78260 -10.76106 -10.33494 -9.81431 -9.69743 -9.53031 -8.35484 0.00293 0.14258 0.16643 0.51395 0.51749 1.14668 1.44565 1.47621 1.50467 1.83220 1.90116 1.97550 2.02218 2.27137 2.41375 2.66532 3.00587 3.39824 3.57660 3.71595 3.79158 3.83377 3.93485 4.07472 4.12906 4.21024 4.22183 4.24679 4.27813 4.33189 4.50519 4.52837 4.63945 4.70312 4.80720 4.84604 4.84804 4.87675 4.88573 4.89088 4.89593 4.90757 4.99394 5.04474 5.14973 5.28249 5.39138 5.53621 5.55808 5.59040 5.59138 5.67902 5.70317 6.11355 6.21108 6.80737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.136 6.136 3 C -0.132 4.132 4 C -0.073 4.073 5 C -0.104 4.104 6 C -0.078 4.078 7 O -0.563 6.563 8 Si 0.977 3.023 9 H -0.255 1.255 10 H -0.270 1.270 11 H -0.253 1.253 12 C -0.096 4.096 13 C -0.187 4.187 14 C 0.135 3.865 15 O -0.314 6.314 16 C 0.097 3.903 17 C -0.103 4.103 18 C -0.122 4.122 19 C -0.104 4.104 20 C -0.373 4.373 21 Si 1.127 2.873 22 C -0.460 4.460 23 C -0.463 4.463 24 C -0.463 4.463 25 C -0.103 4.103 26 C -0.121 4.121 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.399 0.601 33 H 0.139 0.861 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.140 0.860 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 1.634 1.369 2.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.105 5.895 3 C -0.245 4.245 4 C -0.096 4.096 5 C -0.106 4.106 6 C -0.188 4.188 7 O -0.372 6.372 8 Si 0.801 3.199 9 H -0.179 1.179 10 H -0.194 1.194 11 H -0.177 1.177 12 C -0.116 4.116 13 C -0.207 4.207 14 C 0.084 3.916 15 O -0.228 6.228 16 C 0.023 3.977 17 C -0.103 4.103 18 C -0.140 4.140 19 C -0.122 4.122 20 C -0.412 4.412 21 Si 1.314 2.686 22 C -0.567 4.567 23 C -0.570 4.570 24 C -0.570 4.570 25 C -0.121 4.121 26 C -0.139 4.139 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.141 0.859 30 H 0.163 0.837 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.158 0.842 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.250 0.764 1.264 1.935 hybrid contribution -1.461 1.473 -0.001 2.075 sum -0.211 2.237 1.262 2.577 Atomic orbital electron populations 1.23794 0.92402 1.08358 1.06391 1.85906 1.08719 1.02210 1.92619 1.21213 0.93666 0.98173 1.11457 1.20999 0.98361 0.91738 0.98539 1.19389 0.93829 0.93910 1.03466 1.24740 0.95288 1.07215 0.91600 1.86458 1.46539 1.61728 1.42510 0.85307 0.79996 0.74343 0.80235 1.17913 1.19441 1.17735 1.21051 0.91904 0.99985 0.98656 1.21312 1.01558 0.90643 1.07220 1.18566 0.86997 0.88690 0.97309 1.86225 1.14631 1.33783 1.88168 1.21815 0.77747 0.94815 1.03364 1.19596 0.98141 0.98154 0.94376 1.21369 0.97988 0.97181 0.97478 1.21385 0.96173 0.95281 0.99311 1.28093 1.08086 1.11282 0.93753 0.77178 0.63289 0.62061 0.66076 1.26252 1.19242 1.06723 1.04474 1.26281 1.04918 1.09988 1.15774 1.26289 1.04894 1.09993 1.15836 1.21393 0.96143 0.95276 0.99309 1.21371 0.97941 0.97138 0.97455 0.88755 0.89153 0.85906 0.83680 0.88563 0.75093 0.84311 0.82559 0.89680 0.89910 0.85695 0.84295 0.91311 0.90571 0.91345 0.91487 0.90544 0.90864 0.90918 0.90543 0.91500 0.84211 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.00 9.15 113.37 1.04 1.04 16 2 S -0.14 -1.12 22.05 -56.49 -1.25 -2.37 16 3 C -0.13 -1.17 6.12 22.68 0.14 -1.03 16 4 C -0.07 -0.42 8.92 22.40 0.20 -0.22 16 5 C -0.10 -0.44 5.42 -19.87 -0.11 -0.55 16 6 C -0.08 0.08 2.81 71.23 0.20 0.28 16 7 O -0.56 0.13 12.74 -148.98 -1.90 -1.76 16 8 Si 0.98 -1.70 25.06 68.60 1.72 0.02 16 9 H -0.26 0.24 7.11 99.48 0.71 0.94 16 10 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 11 H -0.25 0.57 7.11 99.48 0.71 1.28 16 12 C -0.10 -0.36 8.67 22.30 0.19 -0.17 16 13 C -0.19 -0.82 9.04 22.34 0.20 -0.62 16 14 C 0.14 1.16 6.69 22.60 0.15 1.31 16 15 O -0.31 -2.95 9.49 -93.61 -0.89 -3.84 16 16 C 0.10 0.35 4.87 71.23 0.35 0.69 16 17 C -0.10 -0.56 5.51 -19.87 -0.11 -0.67 16 18 C -0.12 -0.59 9.70 22.27 0.22 -0.37 16 19 C -0.10 -0.27 9.29 22.27 0.21 -0.06 16 20 C -0.37 -0.39 4.59 22.27 0.10 -0.29 16 21 Si 1.13 -5.19 12.32 68.60 0.85 -4.34 16 22 C -0.46 1.44 8.65 113.37 0.98 2.42 16 23 C -0.46 1.46 8.53 113.37 0.97 2.42 16 24 C -0.46 1.39 8.53 113.37 0.97 2.36 16 25 C -0.10 -0.24 9.29 22.27 0.21 -0.04 16 26 C -0.12 -0.55 9.70 22.27 0.22 -0.33 16 27 H 0.09 -0.19 7.75 -2.39 -0.02 -0.21 16 28 H 0.09 -0.07 7.75 -2.39 -0.02 -0.09 16 29 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.15 0.38 5.88 -2.91 -0.02 0.36 16 31 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.40 -3.77 8.74 -74.06 -0.65 -4.42 16 33 H 0.14 0.00 4.86 -2.91 -0.01 -0.01 16 34 H 0.16 -0.12 6.29 -2.92 -0.02 -0.14 16 35 H 0.09 0.02 7.60 -2.39 -0.02 0.00 16 36 H 0.08 0.06 7.62 -2.39 -0.02 0.04 16 37 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 38 H 0.14 -0.24 7.43 -2.91 -0.02 -0.26 16 39 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 42 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 44 H 0.07 -0.27 7.69 -2.38 -0.02 -0.29 16 45 H 0.07 -0.25 7.69 -2.39 -0.02 -0.27 16 46 H 0.08 -0.28 7.96 -2.38 -0.02 -0.30 16 47 H 0.07 -0.12 7.96 -2.39 -0.02 -0.13 16 48 H 0.14 -0.29 7.43 -2.91 -0.02 -0.31 16 49 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 Total: 0.00 -16.95 413.15 5.70 -11.25 By element: Atomic # 1 Polarization: -6.18 SS G_CDS: 1.05 Total: -5.12 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 6.12 Total: 6.17 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -2.79 Total: -5.60 kcal Atomic # 14 Polarization: -6.89 SS G_CDS: 2.56 Total: -4.33 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.25 Total: -2.37 kcal Total: -16.95 5.70 -11.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.475 kcal (2) G-P(sol) polarization free energy of solvation -16.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds