Wall clock time and date at job start Sat Mar 6 2021 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 N 1.46500 * 109.46974 * 119.99980 * 2 1 3 5 5 C 1.46507 * 119.99925 * 304.66570 * 4 2 1 6 6 C 1.39669 * 120.00310 * 124.66804 * 4 2 1 7 7 C 1.38933 * 120.04282 * 354.19211 * 6 4 2 8 8 C 1.38160 * 120.02976 * 180.02562 * 7 6 4 9 9 C 1.38174 * 120.13271 * 359.97438 * 8 7 6 10 10 C 1.50695 * 119.95456 * 179.97438 * 9 8 7 11 11 O 1.42906 * 109.46987 * 105.02262 * 10 9 8 12 12 Si 1.86299 * 109.47342 * 345.02828 * 10 9 8 13 13 H 1.48503 * 109.47284 * 59.99245 * 12 10 9 14 14 H 1.48497 * 109.47305 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47113 * 299.99940 * 12 10 9 16 16 C 1.38815 * 120.08848 * 0.02562 * 9 8 7 17 17 O 1.35899 * 120.01225 * 179.97438 * 16 9 8 18 18 C 1.42901 * 116.99901 * 179.97438 * 17 16 9 19 19 C 1.52991 * 109.47513 * 180.02562 * 18 17 16 20 20 C 1.53581 * 109.47262 * 293.55008 * 19 18 17 21 21 C 1.55145 * 111.28989 * 190.93923 * 20 19 18 22 22 Si 1.89330 * 101.35190 * 28.58181 * 21 20 19 23 23 C 1.86306 * 111.45568 * 114.13713 * 22 21 20 24 24 C 1.86302 * 111.46122 * 239.08245 * 22 21 20 25 25 C 1.56068 * 109.49058 * 173.43836 * 19 18 17 26 26 C 1.38568 * 119.96868 * 0.23176 * 16 9 8 27 27 H 1.08995 * 109.47376 * 299.99969 * 1 2 3 28 28 H 1.09004 * 109.46472 * 60.00406 * 1 2 3 29 29 H 1.08993 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47186 * 239.99794 * 2 1 3 31 31 H 1.09003 * 109.47022 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47105 * 299.99185 * 3 2 1 33 33 H 1.08995 * 109.47028 * 59.99818 * 3 2 1 34 34 H 1.08996 * 109.47195 * 270.00024 * 5 4 2 35 35 H 1.08995 * 109.46952 * 29.99897 * 5 4 2 36 36 H 1.08999 * 109.47269 * 150.00299 * 5 4 2 37 37 H 1.07994 * 119.98300 * 0.02562 * 7 6 4 38 38 H 1.07999 * 119.92844 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.47153 * 225.02379 * 10 9 8 40 40 H 0.96703 * 113.99838 * 300.00906 * 11 10 9 41 41 H 1.09004 * 109.47219 * 60.00176 * 18 17 16 42 42 H 1.08999 * 109.47155 * 300.00498 * 18 17 16 43 43 H 1.08999 * 109.47039 * 53.54393 * 19 18 17 44 44 H 1.08993 * 109.12442 * 70.44756 * 20 19 18 45 45 H 1.09002 * 109.11697 * 311.41734 * 20 19 18 46 46 H 1.08999 * 111.04561 * 270.56268 * 21 20 19 47 47 H 1.08999 * 111.04835 * 146.60313 * 21 20 19 48 48 H 1.09004 * 109.46649 * 185.06900 * 23 22 21 49 49 H 1.08995 * 109.46927 * 65.07208 * 23 22 21 50 50 H 1.09002 * 109.47124 * 305.06604 * 23 22 21 51 51 H 1.09000 * 109.46738 * 294.93442 * 24 22 21 52 52 H 1.08997 * 109.46828 * 54.93077 * 24 22 21 53 53 H 1.08996 * 109.47116 * 174.93284 * 24 22 21 54 54 H 1.09004 * 111.40927 * 43.10265 * 25 19 18 55 55 H 1.09000 * 111.48551 * 278.13053 * 25 19 18 56 56 H 1.07996 * 120.06399 * 179.73026 * 26 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5821 -0.2524 2.5244 6 6 2.8998 -1.7667 1.0705 7 6 3.2199 -2.2602 -0.1882 8 6 4.0914 -3.3250 -0.3122 9 6 4.6471 -3.9014 0.8139 10 6 5.5968 -5.0630 0.6740 11 8 6.9340 -4.6156 0.9062 12 14 5.4675 -5.7672 -1.0459 13 1 5.8180 -4.7190 -2.0377 14 1 6.4038 -6.9115 -1.1840 15 1 4.0779 -6.2321 -1.2873 16 6 4.3309 -3.4124 2.0741 17 8 4.8780 -3.9808 3.1807 18 6 4.5085 -3.4262 4.4448 19 6 5.2188 -4.1901 5.5641 20 6 4.6885 -5.6305 5.6173 21 6 5.1716 -6.3616 6.8976 22 14 5.3674 -4.9139 8.1020 23 6 4.1461 -5.0244 9.5047 24 6 7.1144 -4.7866 8.7366 25 6 4.9492 -3.4834 6.9292 26 6 3.4531 -2.3481 2.2033 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.2707 0.5033 2.9020 35 1 0.5799 0.1708 2.4563 36 1 1.5710 -1.1054 3.2029 37 1 2.7872 -1.8113 -1.0700 38 1 4.3388 -3.7076 -1.2914 39 1 5.3395 -5.8324 1.4020 40 1 7.2309 -3.9288 0.2936 41 1 3.4296 -3.5084 4.5763 42 1 4.7999 -2.3765 4.4802 43 1 6.2913 -4.2048 5.3701 44 1 5.0418 -6.1737 4.7410 45 1 3.5988 -5.6103 5.6073 46 1 6.1255 -6.8606 6.7271 47 1 4.4205 -7.0672 7.2525 48 1 4.2256 -4.1328 10.1266 49 1 4.3625 -5.9074 10.1060 50 1 3.1359 -5.0976 9.1019 51 1 7.3493 -5.6681 9.3331 52 1 7.8031 -4.7237 7.8942 53 1 7.2126 -3.8935 9.3537 54 1 3.9053 -3.1838 7.0228 55 1 5.6188 -2.6366 7.0795 56 1 3.2026 -1.9693 3.1832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_15096552_18051908.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:26:53 Heat of formation + Delta-G solvation = -77.750175 kcal Electronic energy + Delta-G solvation = -30193.645452 eV Core-core repulsion = 26419.488082 eV Total energy + Delta-G solvation = -3774.157370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.214 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.50330 -39.70503 -38.45136 -37.06043 -36.42772 -33.81214 -31.46330 -30.89724 -30.45456 -29.11252 -28.37842 -28.19577 -27.95190 -27.16643 -25.34187 -24.17450 -23.35812 -22.44748 -20.84091 -20.62228 -19.40260 -18.07671 -17.47636 -17.17493 -16.95404 -16.47086 -16.01311 -15.95807 -15.64459 -15.54233 -15.23641 -15.03826 -14.80104 -14.71638 -14.33830 -14.00066 -13.92453 -13.84707 -13.79546 -13.56802 -13.50276 -13.44729 -13.34032 -13.18702 -13.11999 -12.88553 -12.78454 -12.59776 -12.36230 -12.26011 -12.21185 -12.16030 -12.08432 -11.92118 -11.76808 -11.57333 -11.39173 -11.36458 -10.76530 -10.61967 -10.45022 -10.27596 -10.24360 -9.36867 -8.24965 0.40854 0.55754 1.22995 1.44766 1.55328 1.69656 1.93255 2.01002 2.03987 2.06749 2.32769 2.65291 2.76691 3.68716 3.69955 3.78020 3.83732 3.99599 4.00461 4.07209 4.11117 4.13592 4.21735 4.27673 4.39021 4.42206 4.48577 4.55692 4.58487 4.59494 4.63609 4.68974 4.69527 4.72392 4.77120 4.80638 4.81700 4.83913 4.85925 4.86549 4.87924 4.92027 4.95604 5.12418 5.18004 5.21824 5.22323 5.30551 5.33499 5.36665 5.46515 5.49116 5.52973 5.60081 5.64755 5.71828 6.27656 6.38040 6.58932 6.82128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.624 5.624 5 C 0.086 3.914 6 C 0.253 3.747 7 C -0.239 4.239 8 C -0.045 4.045 9 C -0.228 4.228 10 C -0.063 4.063 11 O -0.555 6.555 12 Si 0.985 3.015 13 H -0.241 1.241 14 H -0.277 1.277 15 H -0.258 1.258 16 C 0.189 3.811 17 O -0.316 6.316 18 C 0.064 3.936 19 C -0.082 4.082 20 C -0.109 4.109 21 C -0.416 4.416 22 Si 1.041 2.959 23 C -0.452 4.452 24 C -0.457 4.457 25 C -0.399 4.399 26 C -0.297 4.297 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.383 0.617 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.065 0.935 53 H 0.073 0.927 54 H 0.088 0.912 55 H 0.087 0.913 56 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 3.874 1.064 5.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.334 5.334 5 C -0.057 4.057 6 C 0.149 3.851 7 C -0.261 4.261 8 C -0.064 4.064 9 C -0.231 4.231 10 C -0.173 4.173 11 O -0.362 6.362 12 Si 0.809 3.191 13 H -0.164 1.164 14 H -0.203 1.203 15 H -0.182 1.182 16 C 0.142 3.858 17 O -0.229 6.229 18 C -0.010 4.010 19 C -0.101 4.101 20 C -0.146 4.146 21 C -0.500 4.500 22 Si 1.234 2.766 23 C -0.560 4.560 24 C -0.564 4.564 25 C -0.483 4.483 26 C -0.320 4.320 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.117 0.883 40 H 0.231 0.769 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.085 0.915 53 H 0.092 0.908 54 H 0.107 0.893 55 H 0.105 0.895 56 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.428 3.104 0.797 4.693 hybrid contribution -0.054 0.657 -0.007 0.659 sum -3.482 3.761 0.789 5.186 Atomic orbital electron populations 1.22152 0.94239 1.02207 1.03254 1.21235 0.94649 0.93153 0.87863 1.22149 1.00984 0.95596 1.03016 1.46799 1.47795 1.32012 1.06770 1.21721 1.00557 1.00071 0.83324 1.17710 0.87767 0.86371 0.93255 1.20745 1.06760 1.02373 0.96269 1.20823 0.93989 0.94120 0.97423 1.19470 1.08099 1.04579 0.90919 1.24770 0.82272 0.97216 1.13016 1.86493 1.27911 1.60701 1.61083 0.85258 0.79997 0.79265 0.74609 1.16427 1.20271 1.18249 1.18648 0.90118 0.90396 0.86677 1.86152 1.66197 1.56924 1.13627 1.23094 0.99712 0.97705 0.80527 1.21692 1.00460 0.94587 0.93313 1.21691 1.00558 0.94090 0.98283 1.26739 1.03791 1.11469 1.08036 0.79417 0.66124 0.65521 0.65536 1.26124 1.11441 1.04740 1.13658 1.26193 1.19106 1.04758 1.06385 1.26956 1.05701 1.11245 1.04436 1.20804 1.08177 1.03933 0.99115 0.91859 0.90217 0.92964 0.88752 0.93361 0.90309 0.92281 0.93149 0.89915 0.91518 0.84200 0.84227 0.88334 0.76912 0.91593 0.91833 0.90670 0.93312 0.92007 0.91088 0.90253 0.90774 0.91128 0.91023 0.91084 0.91530 0.90792 0.89276 0.89466 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.61 9.08 71.98 0.65 1.27 16 2 C 0.13 -0.27 3.20 44.99 0.14 -0.13 16 3 C -0.16 0.48 9.26 71.98 0.67 1.15 16 4 N -0.62 -0.54 2.90 -698.12 -2.02 -2.57 16 5 C 0.09 -0.19 9.30 127.77 1.19 1.00 16 6 C 0.25 1.16 6.53 38.20 0.25 1.41 16 7 C -0.24 -0.90 9.31 22.42 0.21 -0.69 16 8 C -0.05 -0.19 8.65 22.24 0.19 0.00 16 9 C -0.23 -1.57 5.27 -19.74 -0.10 -1.68 16 10 C -0.06 -0.37 2.37 71.23 0.17 -0.21 16 11 O -0.56 -4.01 12.88 -148.98 -1.92 -5.93 16 12 Si 0.99 2.63 25.49 68.60 1.75 4.38 16 13 H -0.24 -0.09 6.73 99.48 0.67 0.58 16 14 H -0.28 -1.64 7.11 99.48 0.71 -0.94 16 15 H -0.26 -0.96 7.11 99.48 0.71 -0.25 16 16 C 0.19 1.57 6.66 22.49 0.15 1.72 16 17 O -0.32 -2.79 9.24 -92.42 -0.85 -3.65 16 18 C 0.06 0.21 4.11 71.98 0.30 0.51 16 19 C -0.08 -0.12 2.40 -9.54 -0.02 -0.14 16 20 C -0.11 -0.27 5.21 31.52 0.16 -0.11 16 21 C -0.42 0.15 5.85 72.72 0.43 0.57 16 22 Si 1.04 -5.10 13.35 68.60 0.92 -4.19 16 23 C -0.45 1.77 8.65 113.37 0.98 2.75 16 24 C -0.46 1.18 8.65 113.37 0.98 2.16 16 25 C -0.40 1.29 5.30 73.05 0.39 1.68 16 26 C -0.30 -1.72 8.15 22.49 0.18 -1.53 16 27 H 0.06 -0.27 6.53 -2.39 -0.02 -0.29 16 28 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 30 H 0.09 -0.22 5.31 -2.39 -0.01 -0.24 16 31 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 34 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.08 -0.39 6.19 -2.39 -0.01 -0.40 16 36 H 0.07 -0.15 6.44 -2.39 -0.02 -0.16 16 37 H 0.14 0.01 5.74 -2.91 -0.02 -0.01 16 38 H 0.14 0.06 4.88 -2.91 -0.01 0.04 16 39 H 0.10 0.74 7.82 -2.39 -0.02 0.72 16 40 H 0.38 0.06 8.70 -74.06 -0.64 -0.58 16 41 H 0.07 0.10 7.58 -2.39 -0.02 0.08 16 42 H 0.06 0.15 7.67 -2.39 -0.02 0.13 16 43 H 0.07 0.25 8.13 -2.39 -0.02 0.23 16 44 H 0.05 0.32 8.12 -2.39 -0.02 0.30 16 45 H 0.06 0.11 8.04 -2.39 -0.02 0.09 16 46 H 0.07 0.05 8.04 -2.39 -0.02 0.03 16 47 H 0.08 -0.07 8.04 -2.39 -0.02 -0.09 16 48 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 49 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 50 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 51 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 52 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 53 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 54 H 0.09 -0.41 8.03 -2.38 -0.02 -0.43 16 55 H 0.09 -0.36 8.06 -2.39 -0.02 -0.38 16 56 H 0.14 0.42 4.54 -2.91 -0.01 0.40 16 Total: 0.00 -11.88 426.89 5.70 -6.18 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: 0.92 Total: -3.97 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.91 Total: 9.73 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -2.02 Total: -2.57 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -2.77 Total: -9.57 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.66 Total: 0.19 kcal Total: -11.88 5.70 -6.18 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_15096552_18051908.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.567 kcal (2) G-P(sol) polarization free energy of solvation -11.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds