Wall clock time and date at job start Sat Mar 6 2021 01:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35918 * 116.99834 * 180.02562 * 8 7 6 10 10 C 1.38688 * 120.03835 * 359.97438 * 9 8 7 11 11 C 1.38248 * 119.94957 * 179.97438 * 10 9 8 12 12 Br 1.89101 * 119.98937 * 180.02562 * 11 10 9 13 13 C 1.38437 * 120.02117 * 359.97107 * 11 10 9 14 14 Cl 1.73598 * 119.96152 * 180.02562 * 13 11 10 15 15 C 1.38366 * 120.07639 * 0.02562 * 13 11 10 16 16 C 1.38128 * 120.05410 * 359.78821 * 15 13 11 17 17 C 1.50697 * 120.01672 * 180.25069 * 16 15 13 18 18 O 1.42899 * 109.47192 * 105.18614 * 17 16 15 19 19 Si 1.86308 * 109.46946 * 345.19101 * 17 16 15 20 20 H 1.48501 * 109.46770 * 59.99686 * 19 17 16 21 21 H 1.48495 * 109.47092 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46734 * 299.99907 * 19 17 16 23 23 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 31 31 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 32 32 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 33 33 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 34 34 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 35 35 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 36 36 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 37 37 H 1.07997 * 120.02571 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.97345 * 180.02562 * 15 13 11 39 39 H 1.09001 * 109.47386 * 225.18966 * 17 16 15 40 40 H 0.96701 * 114.00074 * 300.00184 * 18 17 16 41 41 H 1.08995 * 111.07416 * 213.38000 * 23 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0612 -4.4087 -1.5204 10 6 6.6045 -3.8193 -2.6521 11 6 7.7059 -4.3874 -3.2650 12 35 8.4481 -3.5843 -4.8077 13 6 8.2662 -5.5433 -2.7490 14 17 9.6496 -6.2550 -3.5194 15 6 7.7249 -6.1321 -1.6199 16 6 6.6269 -5.5651 -1.0028 17 6 6.0415 -6.2039 0.2301 18 8 6.4005 -5.4361 1.3806 19 14 6.7059 -7.9355 0.4073 20 1 8.1851 -7.8880 0.5291 21 1 6.1296 -8.5648 1.6226 22 1 6.3329 -8.7334 -0.7882 23 6 2.5556 -1.0124 -1.4423 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 2.9328 -0.3695 2.2392 31 1 1.8198 -1.7216 1.8247 32 1 4.5681 -1.0679 0.6057 33 1 4.0203 -2.6213 1.2792 34 1 2.5407 -3.0062 -0.5835 35 1 4.1426 -2.8616 -2.5254 36 1 5.2196 -1.8841 -1.4992 37 1 6.1677 -2.9173 -3.0543 38 1 8.1636 -7.0337 -1.2185 39 1 4.9558 -6.2387 0.1408 40 1 7.3542 -5.3627 1.5227 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_15163260_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:17:50 Heat of formation + Delta-G solvation = -100.994110 kcal Electronic energy + Delta-G solvation = -24019.583785 eV Core-core repulsion = 20387.914694 eV Total energy + Delta-G solvation = -3631.669092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 392.012 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70898 -39.36072 -37.97213 -37.28402 -36.62336 -33.85411 -31.41208 -31.13664 -30.44648 -29.28353 -28.55839 -27.46050 -26.55058 -24.48761 -23.46339 -22.71481 -20.82063 -19.44874 -18.44498 -17.68643 -17.21490 -17.10586 -16.30311 -16.07994 -15.82101 -15.51845 -15.37029 -14.82807 -14.75096 -14.44665 -14.13697 -13.99683 -13.96566 -13.87553 -13.60207 -13.53224 -13.35413 -13.10510 -12.92741 -12.57119 -12.48320 -12.35598 -12.29164 -12.21622 -12.03216 -11.84387 -11.77015 -11.53533 -11.37445 -11.20381 -10.94101 -10.64784 -10.46984 -10.35453 -10.14151 -9.31025 -0.37471 -0.10195 0.32201 1.01880 1.05777 1.33727 1.45462 1.50765 1.80585 1.82998 1.85078 2.01108 2.12969 2.49293 3.32299 3.35199 3.59235 3.66577 3.70560 3.87708 3.94362 4.07405 4.17375 4.26441 4.36928 4.43328 4.47671 4.53575 4.59218 4.63677 4.64286 4.66557 4.67685 4.68816 4.70263 4.85221 5.04441 5.06635 5.14908 5.31146 5.36768 5.41720 5.46513 5.48009 6.14803 6.51682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.442 4.442 4 C -0.396 4.396 5 C -0.113 4.113 6 C -0.077 4.077 7 C 0.057 3.943 8 O -0.290 6.290 9 C 0.174 3.826 10 C -0.175 4.175 11 C -0.041 4.041 12 Br -0.018 7.018 13 C -0.050 4.050 14 Cl -0.042 7.042 15 C -0.074 4.074 16 C -0.130 4.130 17 C -0.067 4.067 18 O -0.528 6.528 19 Si 0.937 3.063 20 H -0.248 1.248 21 H -0.246 1.246 22 H -0.245 1.245 23 C -0.396 4.396 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.123 0.877 40 H 0.374 0.626 41 H 0.082 0.918 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 1.533 0.774 2.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.550 4.550 4 C -0.483 4.483 5 C -0.150 4.150 6 C -0.096 4.096 7 C -0.017 4.017 8 O -0.203 6.203 9 C 0.126 3.874 10 C -0.196 4.196 11 C -0.122 4.122 12 Br 0.068 6.932 13 C -0.079 4.079 14 Cl -0.013 7.013 15 C -0.094 4.094 16 C -0.132 4.132 17 C -0.178 4.178 18 O -0.333 6.333 19 Si 0.759 3.241 20 H -0.172 1.172 21 H -0.169 1.169 22 H -0.168 1.168 23 C -0.481 4.481 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.141 0.859 40 H 0.221 0.779 41 H 0.101 0.899 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.182 0.963 0.418 2.421 hybrid contribution 0.584 0.275 -0.284 0.705 sum -1.598 1.238 0.134 2.026 Atomic orbital electron populations 1.26019 1.19964 1.04619 1.04488 0.80510 0.67417 0.67588 0.67998 1.26014 1.06610 1.17872 1.04542 1.26660 1.03796 1.07999 1.09801 1.21920 0.97921 1.01069 0.94099 1.21516 0.95049 0.98512 0.94515 1.23243 0.96351 0.84709 0.97435 1.86221 1.40975 1.40842 1.52214 1.18659 0.87040 0.91642 0.90059 1.21225 0.97874 1.02940 0.97532 1.21602 0.98080 0.96167 0.96316 1.96845 1.83489 1.80363 1.32482 1.20506 0.94172 0.95922 0.97305 1.98411 1.39956 1.82762 1.80158 1.20867 0.94834 0.99943 0.93720 1.19742 0.97352 0.96000 1.00110 1.24838 1.05132 1.04741 0.83058 1.86588 1.28484 1.74775 1.43431 0.85894 0.80522 0.75363 0.82344 1.17155 1.16947 1.16785 1.26683 1.05351 1.05256 1.10838 0.91228 0.91071 0.91019 0.91061 0.91087 0.91156 0.90360 0.90330 0.91916 0.90517 0.89806 0.91585 0.91550 0.83281 0.83459 0.85911 0.77928 0.89872 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.92 8.65 101.05 0.87 1.79 16 2 Si 0.97 -3.10 13.35 -169.99 -2.27 -5.37 16 3 C -0.44 0.93 8.65 101.05 0.87 1.81 16 4 C -0.40 0.62 5.95 38.72 0.23 0.85 16 5 C -0.11 0.09 5.06 -24.87 -0.13 -0.04 16 6 C -0.08 0.11 2.58 -89.07 -0.23 -0.12 16 7 C 0.06 -0.06 3.98 37.16 0.15 0.09 16 8 O -0.29 -0.25 9.23 -19.48 -0.18 -0.43 16 9 C 0.17 0.16 6.66 -39.23 -0.26 -0.10 16 10 C -0.17 -0.10 8.78 -39.41 -0.35 -0.45 16 11 C -0.04 -0.06 6.22 -39.50 -0.25 -0.31 16 12 Br -0.02 -0.03 32.52 -68.01 -2.21 -2.24 16 13 C -0.05 -0.08 6.32 -39.46 -0.25 -0.33 16 14 Cl -0.04 -0.08 27.73 -51.86 -1.44 -1.51 16 15 C -0.07 -0.04 8.44 -39.57 -0.33 -0.37 16 16 C -0.13 -0.06 5.27 -104.47 -0.55 -0.61 16 17 C -0.07 0.02 2.38 36.00 0.09 0.11 16 18 O -0.53 -0.12 12.88 -35.23 -0.45 -0.58 16 19 Si 0.94 -0.79 25.49 -169.99 -4.33 -5.13 16 20 H -0.25 0.28 6.74 56.52 0.38 0.67 16 21 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 22 H -0.24 0.05 7.11 56.52 0.40 0.45 16 23 C -0.40 1.05 5.28 38.41 0.20 1.25 16 24 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.08 -0.12 8.06 -51.93 -0.42 -0.53 16 31 H 0.08 -0.10 8.06 -51.93 -0.42 -0.52 16 32 H 0.06 -0.06 8.05 -51.93 -0.42 -0.48 16 33 H 0.08 0.06 8.11 -51.93 -0.42 -0.36 16 34 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.12 7.65 -51.92 -0.40 -0.51 16 36 H 0.07 -0.11 7.59 -51.93 -0.39 -0.51 16 37 H 0.15 -0.15 6.30 -52.49 -0.33 -0.48 16 38 H 0.15 -0.13 4.88 -52.49 -0.26 -0.38 16 39 H 0.12 -0.06 7.83 -51.93 -0.41 -0.47 16 40 H 0.37 -1.13 8.70 45.56 0.40 -0.73 16 41 H 0.08 -0.24 8.04 -51.93 -0.42 -0.66 16 42 H 0.08 -0.24 7.85 -51.93 -0.41 -0.65 16 LS Contribution 373.40 15.07 5.63 5.63 Total: 0.00 -3.95 373.40 -10.80 -14.75 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: -5.61 Total: -8.70 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.07 Total: 3.58 kcal Atomic # 8 Polarization: -0.37 SS G_CDS: -0.63 Total: -1.01 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: -6.60 Total: -10.50 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.44 Total: -1.51 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.21 Total: -2.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -3.95 -10.80 -14.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_15163260_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.245 kcal (2) G-P(sol) polarization free energy of solvation -3.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds