Wall clock time and date at job start Sat Mar 6 2021 01:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35918 * 116.99834 * 180.02562 * 8 7 6 10 10 C 1.38688 * 120.03835 * 359.97438 * 9 8 7 11 11 C 1.38248 * 119.94957 * 179.97438 * 10 9 8 12 12 Br 1.89101 * 119.98937 * 180.02562 * 11 10 9 13 13 C 1.38437 * 120.02117 * 359.97107 * 11 10 9 14 14 Cl 1.73598 * 119.96152 * 180.02562 * 13 11 10 15 15 C 1.38366 * 120.07639 * 0.02562 * 13 11 10 16 16 C 1.38128 * 120.05410 * 359.78821 * 15 13 11 17 17 C 1.50697 * 120.01672 * 180.25069 * 16 15 13 18 18 O 1.42899 * 109.47192 * 105.18614 * 17 16 15 19 19 Si 1.86308 * 109.46946 * 345.19101 * 17 16 15 20 20 H 1.48501 * 109.46770 * 59.99686 * 19 17 16 21 21 H 1.48495 * 109.47092 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46734 * 299.99907 * 19 17 16 23 23 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 31 31 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 32 32 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 33 33 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 34 34 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 35 35 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 36 36 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 37 37 H 1.07997 * 120.02571 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.97345 * 180.02562 * 15 13 11 39 39 H 1.09001 * 109.47386 * 225.18966 * 17 16 15 40 40 H 0.96701 * 114.00074 * 300.00184 * 18 17 16 41 41 H 1.08995 * 111.07416 * 213.38000 * 23 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0612 -4.4087 -1.5204 10 6 6.6045 -3.8193 -2.6521 11 6 7.7059 -4.3874 -3.2650 12 35 8.4481 -3.5843 -4.8077 13 6 8.2662 -5.5433 -2.7490 14 17 9.6496 -6.2550 -3.5194 15 6 7.7249 -6.1321 -1.6199 16 6 6.6269 -5.5651 -1.0028 17 6 6.0415 -6.2039 0.2301 18 8 6.4005 -5.4361 1.3806 19 14 6.7059 -7.9355 0.4073 20 1 8.1851 -7.8880 0.5291 21 1 6.1296 -8.5648 1.6226 22 1 6.3329 -8.7334 -0.7882 23 6 2.5556 -1.0124 -1.4423 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 2.9328 -0.3695 2.2392 31 1 1.8198 -1.7216 1.8247 32 1 4.5681 -1.0679 0.6057 33 1 4.0203 -2.6213 1.2792 34 1 2.5407 -3.0062 -0.5835 35 1 4.1426 -2.8616 -2.5254 36 1 5.2196 -1.8841 -1.4992 37 1 6.1677 -2.9173 -3.0543 38 1 8.1636 -7.0337 -1.2185 39 1 4.9558 -6.2387 0.1408 40 1 7.3542 -5.3627 1.5227 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_15163260_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:17:49 Heat of formation + Delta-G solvation = -89.835757 kcal Electronic energy + Delta-G solvation = -24019.099923 eV Core-core repulsion = 20387.914694 eV Total energy + Delta-G solvation = -3631.185229 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 392.012 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72169 -39.35676 -38.00266 -37.31202 -36.56756 -33.89393 -31.43613 -31.14727 -30.37689 -29.09692 -28.36601 -27.33789 -26.56250 -24.41164 -23.44038 -22.73140 -20.71697 -19.45020 -18.44640 -17.71637 -17.20554 -17.08052 -16.29812 -16.03613 -15.76709 -15.48034 -15.34356 -14.85164 -14.74169 -14.37374 -14.07664 -13.86748 -13.81940 -13.77718 -13.47278 -13.37358 -13.17924 -13.05267 -12.84215 -12.55289 -12.53320 -12.33943 -12.20528 -12.19181 -12.04617 -11.81341 -11.73810 -11.48625 -11.31829 -11.28482 -10.75277 -10.45998 -10.44134 -10.21807 -10.18324 -9.35807 -0.41819 -0.14766 0.24496 0.94216 1.10004 1.39590 1.49712 1.70600 1.88461 2.02509 2.04374 2.07316 2.10069 2.66491 3.31554 3.38838 3.64227 3.69862 3.78135 3.96926 3.99755 4.12567 4.18998 4.33269 4.41023 4.49004 4.55968 4.60431 4.65693 4.68864 4.77534 4.82445 4.85052 4.86399 4.86647 4.87243 5.12658 5.19772 5.21690 5.38304 5.51455 5.55712 5.62068 5.65848 6.16762 6.69196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.039 2.961 3 C -0.456 4.456 4 C -0.415 4.415 5 C -0.113 4.113 6 C -0.077 4.077 7 C 0.051 3.949 8 O -0.301 6.301 9 C 0.167 3.833 10 C -0.173 4.173 11 C -0.050 4.050 12 Br -0.021 7.021 13 C -0.060 4.060 14 Cl -0.048 7.048 15 C -0.074 4.074 16 C -0.132 4.132 17 C -0.067 4.067 18 O -0.543 6.543 19 Si 0.967 3.033 20 H -0.239 1.239 21 H -0.266 1.266 22 H -0.253 1.253 23 C -0.401 4.401 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.121 0.879 40 H 0.387 0.613 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 1.994 0.385 3.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.233 2.767 3 C -0.563 4.563 4 C -0.499 4.499 5 C -0.150 4.150 6 C -0.095 4.095 7 C -0.024 4.024 8 O -0.213 6.213 9 C 0.119 3.881 10 C -0.194 4.194 11 C -0.131 4.131 12 Br 0.065 6.935 13 C -0.089 4.089 14 Cl -0.019 7.019 15 C -0.093 4.093 16 C -0.133 4.133 17 C -0.177 4.177 18 O -0.350 6.350 19 Si 0.790 3.210 20 H -0.163 1.163 21 H -0.191 1.191 22 H -0.176 1.176 23 C -0.485 4.485 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.139 0.861 40 H 0.236 0.764 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.339 1.431 0.039 2.742 hybrid contribution 0.603 0.148 -0.108 0.631 sum -1.735 1.579 -0.068 2.347 Atomic orbital electron populations 1.26198 1.21237 1.04520 1.04507 0.79423 0.65638 0.65814 0.65871 1.26178 1.06704 1.18851 1.04585 1.26883 1.03695 1.08434 1.10883 1.21906 0.98373 1.00296 0.94459 1.21513 0.94912 0.98871 0.94227 1.23429 0.96662 0.84357 0.97918 1.86221 1.40956 1.41539 1.52633 1.18798 0.87190 0.91871 0.90230 1.21357 0.97501 1.03260 0.97274 1.21689 0.98514 0.96398 0.96477 1.96832 1.83604 1.80372 1.32683 1.20626 0.94289 0.96251 0.97780 1.98405 1.40301 1.82857 1.80318 1.20987 0.94727 1.00235 0.93391 1.19867 0.97256 0.95955 1.00254 1.24894 1.05134 1.05013 0.82626 1.86554 1.29922 1.74951 1.43569 0.85468 0.80605 0.74161 0.80808 1.16269 1.19055 1.17633 1.26771 1.05694 1.04828 1.11245 0.90980 0.91307 0.91194 0.91284 0.91174 0.90883 0.90614 0.90836 0.91682 0.92652 0.90362 0.90599 0.90759 0.81939 0.82328 0.86126 0.76412 0.89193 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.08 8.65 113.37 0.98 3.06 16 2 Si 1.04 -7.18 13.35 68.60 0.92 -6.27 16 3 C -0.46 2.20 8.65 113.37 0.98 3.18 16 4 C -0.41 1.08 5.95 72.99 0.43 1.51 16 5 C -0.11 0.10 5.06 31.80 0.16 0.26 16 6 C -0.08 0.22 2.58 -9.79 -0.03 0.19 16 7 C 0.05 -0.11 3.98 71.98 0.29 0.17 16 8 O -0.30 -0.61 9.23 -92.63 -0.86 -1.47 16 9 C 0.17 0.33 6.66 22.50 0.15 0.48 16 10 C -0.17 -0.18 8.78 22.38 0.20 0.02 16 11 C -0.05 -0.15 6.22 22.32 0.14 -0.01 16 12 Br -0.02 -0.06 32.52 -20.37 -0.66 -0.72 16 13 C -0.06 -0.19 6.32 22.35 0.14 -0.05 16 14 Cl -0.05 -0.18 27.73 -2.72 -0.08 -0.26 16 15 C -0.07 -0.07 8.44 22.27 0.19 0.12 16 16 C -0.13 -0.14 5.27 -19.77 -0.10 -0.24 16 17 C -0.07 0.03 2.38 71.24 0.17 0.20 16 18 O -0.54 -0.46 12.88 -148.98 -1.92 -2.38 16 19 Si 0.97 -1.58 25.49 68.60 1.75 0.17 16 20 H -0.24 0.74 6.74 99.48 0.67 1.41 16 21 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 22 H -0.25 0.09 7.11 99.48 0.71 0.80 16 23 C -0.40 2.51 5.28 72.79 0.38 2.89 16 24 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 25 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H 0.07 -0.17 8.06 -2.39 -0.02 -0.19 16 31 H 0.07 -0.12 8.06 -2.39 -0.02 -0.14 16 32 H 0.06 -0.10 8.05 -2.39 -0.02 -0.12 16 33 H 0.05 0.18 8.11 -2.39 -0.02 0.16 16 34 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.08 -0.33 7.65 -2.38 -0.02 -0.34 16 36 H 0.07 -0.30 7.59 -2.39 -0.02 -0.31 16 37 H 0.16 -0.40 6.30 -2.91 -0.02 -0.42 16 38 H 0.16 -0.33 4.88 -2.91 -0.01 -0.34 16 39 H 0.12 -0.04 7.83 -2.39 -0.02 -0.05 16 40 H 0.39 -2.28 8.70 -74.06 -0.64 -2.93 16 41 H 0.09 -0.64 8.04 -2.39 -0.02 -0.66 16 42 H 0.09 -0.68 7.85 -2.39 -0.02 -0.70 16 Total: 0.00 -9.19 373.40 4.34 -4.85 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: 1.10 Total: -5.69 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 4.08 Total: 11.77 kcal Atomic # 8 Polarization: -1.08 SS G_CDS: -2.77 Total: -3.85 kcal Atomic # 14 Polarization: -8.77 SS G_CDS: 2.66 Total: -6.10 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.66 Total: -0.72 kcal Total: -9.19 4.34 -4.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_15163260_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.983 kcal (2) G-P(sol) polarization free energy of solvation -9.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds